Pinf025968.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pegoplata infirma
Gene Symbol
-
Assembly
GCA_963921195.1
Location
OY992538.1:167682133-167686073[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0036 0.31 12.9 2.9 2 23 367 389 366 389 0.96
2 16 0.0031 0.26 13.1 3.4 1 23 396 419 396 419 0.97
3 16 0.00011 0.009 17.7 6.2 1 23 426 448 426 448 0.97
4 16 0.00036 0.031 16.1 2.6 1 23 453 475 453 475 0.97
5 16 0.00043 0.037 15.8 1.6 2 23 485 507 484 507 0.96
6 16 0.00072 0.061 15.1 1.8 1 23 569 591 569 591 0.97
7 16 0.013 1.1 11.2 2.8 2 23 609 631 608 631 0.95
8 16 0.094 8 8.5 5.2 1 23 638 661 638 661 0.95
9 16 0.00018 0.015 17.0 1.3 1 23 668 690 668 690 0.98
10 16 0.00034 0.029 16.2 3.8 3 23 697 717 695 717 0.96
11 16 0.00017 0.015 17.1 3.7 1 23 725 748 725 748 0.97
12 16 0.00025 0.021 16.6 3.4 1 23 777 800 777 800 0.96
13 16 0.021 1.8 10.5 3.0 1 23 807 830 807 830 0.97
14 16 0.052 4.4 9.3 7.9 1 23 837 859 837 859 0.97
15 16 5.2e-06 0.00044 21.9 0.9 1 23 864 886 864 886 0.97
16 16 0.00083 0.071 14.9 2.2 1 23 895 918 895 918 0.95

Sequence Information

Coding Sequence
ATGTCTGATCATCAGCACATTCGATTTGACATTCCGGGCAATCTGTCACTCACTCAAGAGTTTATATCAAGGAAAAATACTAACTGGATTTCTTATAGGGAATCTATCGCTTCTAAAGCTGACCTGCTGATCACCGATATTGGTTCCATAGGGGACCTAGAAGTGGCAGCAGGACAGCTTGAACAAGTGATTAAATCCTCGTATCATGAAATCAGCACAATACGTCAACAAAAGGTACGACGTAAGGTCCCATGGTGGAGTGGTGCTCTTGATGATATGCGGAAGAAAGTTAGAAAACTTTTTAATGAGGCCAAACGTACTGGGAACTGGGATACTTATAGAAGTTCTCTGACTGAGTACAACAAGGAAATTAGAAGATCCAAAAGGGCATCTTGGAGGAAATTCTGTGAAAGCATAGAAGATACTCCTAGAGACGCAAGACTACATAAAACGTTAGTGAAATCTTCTATGAACGAAATGGGTCTCTTAAGGGGAAATAACGGTATATATACCAAGGACCGAAAGGAGACTTTGGAGTTGTTATTACATATTCACTTTCCTGATTCGATCATTTGTGATCCTTCTGGAAATTATATTATACACGACCCCATAAGATTTTGTAGGAGAACATCTAATCTTTCAGCCGTCATCTTCGACCCGGATAAGGTTAGATGGGCCATTAAGTCCTTTGATCCGTTTAAATCCCCTGGGGGGGACGAAATCTTCCCCGCTCTTTTGCAGAATGGGTTAGACTTTCTTTTAGATACATTAGTATCTGTTTTTAGATCCAGCTTTATATTTGGACACATCCCTTCTCTTTGGAGGAAGGTAAATGTTGTATTCATACCTAAAGCTGGAAATAGACCGGCTGAATTGCCAAAATCGTATAGACCCATAAGTCTTACATCCTTCCTACTGAAGACTATGGAAAGATTACTGGATCTTCACTTAAGATCCACGTACTTGGACCAATATCCTTTACACAGGAATCAGTATGCATATGCAAAAGGCAAATCTACTGATTCGGCTTTACATCATCTGAACCATGTTAATTCAGCACATCCATGGAAATTCGGCGTTAGTATTCCTAAATATAATCAATGCAATTATTGTGGTGAAAGACTAAGGACatcttttacatatcaaaagcatatacacagcatgcatccaAATGAGAAACCTCCTTATAAATGTAAAACATGCAGTAAGGAATATTTTCAACTTAAGACTCTAACGAGACATGAACGACTACAGCACTCTGGTAATGATAAATTTCATAAATGTGATATttgtttgaaaagttttaaacaaTTGTCGCATTTAACACGACATAAATCGATGCACTCTGCACCACAGCATTCATGCTCGATATGTTCAGCTAAATTTCGATACAATAACTATTTAAACGTTCACATGCGCCTTCATCAAAAAAATCCAATAGAGAAATCACTCAAATGTGTCATATGTTCAGAAGAATTTTCCCACCCAGATTTACTTAAAAATCATACCAAGAGAAAACACAGCGATAACACCTCCGCATCAGAAAATATTAACCCACTAGAAAAAAATGAATCAGAATTAATAAATAAAGATGATCGATTCGAAGTTGTCAAACATACAGGAGATGATCATGAAAAATATACCTCAAATTcaaatgaaaacattttgtgggATTCCCAGAAAAACTCTCCCAAAATGGGAGATCATCAATGTGGGTATTGTGGtaaacaatttgaaaaatcgcAAGCATATAAAGTTCATTTATATGtccatacaaaaaacaaaatttcctgGACACACGGAGTTAATGTTCCCAAGAAAAATCAATGTGGTTATTGTGGTAAACAATTCAAATCATCTTCAATATATCACATGCATCTACGCAACTTTCACTCAAATATAGAACTACCACATAAATGTAAATCATGCAATAAGCGATATTTTTCACTTCGAAGTCTAAGCCGACATGAAAAACAAGAACACTCTGGTAATAATAGACCGTATAAATGTGATATTTGTTTAAAAAGGTTTTATCGATGGCAACTTTTAAAACTACATAAATTGATACACTCTGCACCACAGCATTTATGTTCGATGTGTCCAGTTAAATTTCGACATCAATCAACTTTAGACGCTCACATGCGCAAACATACAAATGTAACAATAGAATCATACAAATGCGATATATGTTTTAGACAATTTAGCCACCTAAATTCACTTAAAAGACATACTAAAATAATTCACAGCATTACCACCACATCGGGAAACATTAACCCAGAAAGTATCACACAAGAAAAATGGACACCCGGAGTTAGTATTCCCAAGAAACATCAATGTGATTATTGTGGTAAACAATTGACAACACATGGAAATTATCAAAGACATATACTAAACCTTCATCCAAGTGTAAAACAGTGTCATAAATGTAAAATATGTGATAAGAGATATTTAACAATTGGGAGTCTTACTGAACATAAAAGACGACAACACCCCGATAATAATGGACCTCATAAATGTGATATTTGCTTGAGAAGTTTTTACAAATTGCATCATTTAACATCACATAAACTGATGCACTCTGAACCACAGCATTCATGTCCGGTATGTCCAGCTAAATTTCGAAACAAAAACACTTTAAACGTTCACATGCGCATTCATACAAATGACACAAAAGTGAAACCATTTGCATGTGGCATATGTTCCAGCAAATTTAGCCACCCCTCTTCATATAAACGACATATTAAGGAATTTCACAGCAATACCATTGTCGCATCTGGAAATATTAACACACTAGAAGAAGCCATTTCAGAATTAATAAAAGATAATCCATTAAAACATTATTGTCCAGAAACTTCCGAGTATAAATCTATTATGTGCATTGATTTGCCTGAAGAAAATCAACAACAACAATTACCTTCAACATCTAAAACGCAATTGGAGAATACTAAATGCTCTACATTTCCACAAAATATTGTTATTGAGAATTCCAAAGCTATATCAATTGCATTGCCTATGAAAACTATTCTTAAAGATGCTTCGAATTCTTCTACATTGACTACTGAATCAAATTTAGAATTAAAAACTGACAAGACTAAACTTAGTAGCATTTATAATATAGAAGATTTTATTTAA
Protein Sequence
MSDHQHIRFDIPGNLSLTQEFISRKNTNWISYRESIASKADLLITDIGSIGDLEVAAGQLEQVIKSSYHEISTIRQQKVRRKVPWWSGALDDMRKKVRKLFNEAKRTGNWDTYRSSLTEYNKEIRRSKRASWRKFCESIEDTPRDARLHKTLVKSSMNEMGLLRGNNGIYTKDRKETLELLLHIHFPDSIICDPSGNYIIHDPIRFCRRTSNLSAVIFDPDKVRWAIKSFDPFKSPGGDEIFPALLQNGLDFLLDTLVSVFRSSFIFGHIPSLWRKVNVVFIPKAGNRPAELPKSYRPISLTSFLLKTMERLLDLHLRSTYLDQYPLHRNQYAYAKGKSTDSALHHLNHVNSAHPWKFGVSIPKYNQCNYCGERLRTSFTYQKHIHSMHPNEKPPYKCKTCSKEYFQLKTLTRHERLQHSGNDKFHKCDICLKSFKQLSHLTRHKSMHSAPQHSCSICSAKFRYNNYLNVHMRLHQKNPIEKSLKCVICSEEFSHPDLLKNHTKRKHSDNTSASENINPLEKNESELINKDDRFEVVKHTGDDHEKYTSNSNENILWDSQKNSPKMGDHQCGYCGKQFEKSQAYKVHLYVHTKNKISWTHGVNVPKKNQCGYCGKQFKSSSIYHMHLRNFHSNIELPHKCKSCNKRYFSLRSLSRHEKQEHSGNNRPYKCDICLKRFYRWQLLKLHKLIHSAPQHLCSMCPVKFRHQSTLDAHMRKHTNVTIESYKCDICFRQFSHLNSLKRHTKIIHSITTTSGNINPESITQEKWTPGVSIPKKHQCDYCGKQLTTHGNYQRHILNLHPSVKQCHKCKICDKRYLTIGSLTEHKRRQHPDNNGPHKCDICLRSFYKLHHLTSHKLMHSEPQHSCPVCPAKFRNKNTLNVHMRIHTNDTKVKPFACGICSSKFSHPSSYKRHIKEFHSNTIVASGNINTLEEAISELIKDNPLKHYCPETSEYKSIMCIDLPEENQQQQLPSTSKTQLENTKCSTFPQNIVIENSKAISIALPMKTILKDASNSSTLTTESNLELKTDKTKLSSIYNIEDFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-