Pinf025973.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:167736129-167738861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.018 1.5 10.7 5.7 1 23 9 31 9 31 0.98 2 20 4.5e-05 0.0038 18.9 3.0 1 23 38 60 38 60 0.98 3 20 0.0047 0.4 12.6 4.1 1 23 65 87 65 87 0.97 4 20 0.35 30 6.7 0.1 8 23 103 119 97 119 0.89 5 20 0.00072 0.061 15.1 0.4 2 23 203 224 202 224 0.97 6 20 0.0013 0.11 14.3 4.4 1 23 241 264 241 264 0.97 7 20 0.33 28 6.7 7.4 1 23 271 294 271 294 0.95 8 20 3.4e-06 0.00029 22.5 3.6 1 23 301 323 301 323 0.98 9 20 0.00043 0.036 15.8 4.4 1 23 328 350 328 350 0.97 10 20 0.00011 0.0094 17.7 0.7 2 23 360 382 359 382 0.95 11 20 0.17 15 7.6 2.5 2 23 466 488 465 488 0.96 12 20 0.47 40 6.3 6.5 1 23 495 518 495 519 0.95 13 20 0.0023 0.19 13.6 5.2 1 23 523 545 523 545 0.97 14 20 0.00011 0.0091 17.7 2.3 3 23 552 572 550 572 0.96 15 20 2.8e-05 0.0024 19.6 3.7 1 23 580 603 580 603 0.98 16 20 0.0035 0.3 13.0 2.2 1 23 632 655 632 655 0.96 17 20 0.11 9.1 8.3 0.8 1 23 662 685 662 685 0.94 18 20 0.0019 0.16 13.8 3.3 1 23 692 714 692 714 0.98 19 20 7.9e-05 0.0067 18.1 4.3 1 23 719 741 719 741 0.97 20 20 0.0014 0.12 14.3 1.1 1 23 750 773 750 773 0.95
Sequence Information
- Coding Sequence
- ATGCATCCAAATGAGAAACCTCCTCATAAATGTAAAACATGCAATAAGGAATATTTTCAACTTAAGACTCTAAGTCGACATGAAAGACAACATATCAATAAAGATAAATTGCATAAATGTgatatttgtttaaaaagttttacataCTTGTCGGAATTAACACGACATAAATTGATGCACTCTGAAGCACAGCATTCATGTTCGATGTGTACAGCTAAATTTCGACACAAAAGAGATTTAAACTATCACATTATCATTCATAAAAATAATCCAATTGAGAAACCATTAAAATGTGACATATATTCAGAAGAGTTTTCCCAGCCAGATTTACTTAAAAATCATACCAAAAGAAATCACAGCGATAACACCGCCGCATCTGAAAATATTAACCTACTAGAAAAAGATGAATCTGAATTAATAAATAAAGATGATCGATTTGAAGATTCTCCTGCATCTTCTAATATGAATAATGATGTTGTGAAACCTAGCAAAGATAATCGAGAAAGTGAAGTTGTCAAACTTGCAGGAGATGATCATGAAAAATATACCTCAAATTctaatgaaaacattttgttgGATTCCCAGAAAAACTCTCCCAAAAAAAATCAATGTGGGTACTGTGGTAAGCAATTTGAAAAACCGCAAGCAtataaaactcatttatatatccatacaaaaaacaaaatttcatggACACCCGGAGTTAATATTCCCAAGAAATATCAATGTTATTATTGTGGTATGCAATTTGAATCATCTTCAACATATCACAGTCATCTACGCAACTTTCACTCAAATATAGAACTACCACATAAATGTAAATCATGCAATAAGCGATATTTTTCACTTCGAAGTCTACATCGACATGAAAAACAAGAACACTCTGGTAATAATAGACCGTATAAATGTGATATTTGTTGGAAAAGTTTTACACACTTGTCGTATTTAACACGACATAAATTGATGCACTCTGAACCACAACATTCATGTTCGATATGTGCAGCTAAATTTCGACACAAACCCCATTTAAACGTTCACATGCGCATTCATAAAAATAATCCAATTGAGAAACCATTAAAATGTGACATATGTTCAGAAGAATTTTCCCAGCCAGATTTActtaaaaagcataataaaaaaaatcacagcgATAACACCGCCGCATCTGAAAATATTAACCTACTAGAAAAAGATGAATcagaattaataaataaaaatgatcGATTCGAAGATTCTCCTGCATCTTCTAATATGAATAACGATTTTGTGAAACCTACCAAAGATCATCAAAAAAGTGAAGTTGTCAAACTTACAGGAGATGATCATGAAATATATACctcaaattttaatgaaaacattttgtgggATTCCCAGAAAAACTCTCCCAAAAAAAATCAATGTGGGTATTGTGGCAAACAATTAAAATCATCTTCAATATATCACACCCATCTACGCAACTTTCACCCAAATATAGAACCACCACATAAATGTAAATCATGCAGTAAGAGATATTTTAAACTTATAAGTCTAACTCGACATGTTAAACAAGAACACCATAAAAGACCGCATAAATGTGATATTTGTTTAAAAAGGTTTTATCGACGGGCACTTTTAAAACATCATAAATTGGTACACTCTGCACCACAGCATTTATGTTCGATATGTCCAGCTAAATTTCGTCATCAATCAGGTTTAGACGCTCACATGCGCAAACATACAAAAGGACCAATAGAACCATTCAAATGCGATATATGTTCTAGACAATTTAGCCACCCAAATTCACTTAGAAGACATACTAAAAAAATTCACAGCGTTACCACCACTTCGGGAAACATTAACCCAGAAAGTATCACACAAGAACAATGGACACCCGGAGTTAATATTCCCAATAAATATCAATGTGATTATTGTGGTAAACAATTGACAGCTTGTACAAGCTATCAAAGACATATATTAAACCTTCACCCAAGTGTAAAACCGTGTCATGAATGCAAAATATGTGATAAGAGATATTTAACAATTAGGGGTCTTGTTGATCATGAAAGACGAGAACACCCCGATAATAATGGACCTCATAAATGTGATATTTGTTTGAAAAGTTTTTACAAATTGGCGTATTTAACATCACATAAACTGACGCACTCTGCACCACAGCATTCATGTCCGATATGTCTAGCTAAATTTCGACACAAAAGCTATTTAAAAGTTCACATGCGCAATCATGCAAAAAAAGCAAAAGAAAAACCATTTACTTGTGCAATATGTTCCAACAAATTTAGCAACCCCATTTCATATAAACGACATATTAAAGATTTTCACAGCAATACCATCGTCGCATCTGGAAATATTAACACACTAGAAGAAGACGATTCAGAATTATTAAAAGATAATCGATTAAAACATGATTGTTCAGAAACTTCTGAGTATAAATCTAACATGTGCATTGATTTTCCTGCAGAAAATCAACAACAACAATTACCTTCCACATCTAAAACGCAATTGGAGTATACTAAATACTCTACAATTCCACAAAATATTGTTATTGAGAATTCCAAAGCTATATCTTTTGCATTGCCTATGGAAACTATTCTTAAAGATGCTTCGACTTCTTCTACATCGGCTACCGAATCAAATTTCCGTGAATTTATCAAAGAAAAGGAAAATCAGAATGTAGAATTAAAAACGGACAAGGCTAAACTAAGTAGCATTTATAATATAGAAGATTTTATTtaa
- Protein Sequence
- MHPNEKPPHKCKTCNKEYFQLKTLSRHERQHINKDKLHKCDICLKSFTYLSELTRHKLMHSEAQHSCSMCTAKFRHKRDLNYHIIIHKNNPIEKPLKCDIYSEEFSQPDLLKNHTKRNHSDNTAASENINLLEKDESELINKDDRFEDSPASSNMNNDVVKPSKDNRESEVVKLAGDDHEKYTSNSNENILLDSQKNSPKKNQCGYCGKQFEKPQAYKTHLYIHTKNKISWTPGVNIPKKYQCYYCGMQFESSSTYHSHLRNFHSNIELPHKCKSCNKRYFSLRSLHRHEKQEHSGNNRPYKCDICWKSFTHLSYLTRHKLMHSEPQHSCSICAAKFRHKPHLNVHMRIHKNNPIEKPLKCDICSEEFSQPDLLKKHNKKNHSDNTAASENINLLEKDESELINKNDRFEDSPASSNMNNDFVKPTKDHQKSEVVKLTGDDHEIYTSNFNENILWDSQKNSPKKNQCGYCGKQLKSSSIYHTHLRNFHPNIEPPHKCKSCSKRYFKLISLTRHVKQEHHKRPHKCDICLKRFYRRALLKHHKLVHSAPQHLCSICPAKFRHQSGLDAHMRKHTKGPIEPFKCDICSRQFSHPNSLRRHTKKIHSVTTTSGNINPESITQEQWTPGVNIPNKYQCDYCGKQLTACTSYQRHILNLHPSVKPCHECKICDKRYLTIRGLVDHERREHPDNNGPHKCDICLKSFYKLAYLTSHKLTHSAPQHSCPICLAKFRHKSYLKVHMRNHAKKAKEKPFTCAICSNKFSNPISYKRHIKDFHSNTIVASGNINTLEEDDSELLKDNRLKHDCSETSEYKSNMCIDFPAENQQQQLPSTSKTQLEYTKYSTIPQNIVIENSKAISFALPMETILKDASTSSTSATESNFREFIKEKENQNVELKTDKAKLSSIYNIEDFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -