Pinf025881.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:166701942-166706303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.5 3e+02 3.5 2.6 8 23 7 22 6 23 0.91 2 23 0.0016 0.14 14.0 5.2 1 23 69 92 69 92 0.91 3 23 0.034 2.9 9.9 6.6 1 23 135 158 135 158 0.97 4 23 0.0002 0.017 16.9 2.7 1 23 165 188 165 188 0.91 5 23 0.0021 0.18 13.6 5.8 1 23 195 217 195 217 0.95 6 23 3.7e-05 0.0031 19.2 1.2 1 23 222 244 222 244 0.97 7 23 0.073 6.2 8.8 0.8 2 23 251 273 250 273 0.96 8 23 0.0015 0.13 14.1 3.9 2 23 342 363 341 363 0.96 9 23 0.0011 0.096 14.5 1.2 1 23 380 403 380 403 0.98 10 23 0.059 5 9.1 3.0 1 22 410 431 410 433 0.90 11 23 6e-05 0.0051 18.5 3.0 1 23 440 463 440 463 0.96 12 23 0.0089 0.76 11.7 0.4 5 23 474 492 473 492 0.96 13 23 0.68 58 5.8 0.1 5 23 502 521 501 521 0.93 14 23 0.0054 0.46 12.4 3.0 2 23 590 611 589 611 0.97 15 23 0.02 1.7 10.6 1.0 2 23 629 651 628 651 0.94 16 23 0.0014 0.12 14.2 2.7 1 23 658 681 658 681 0.96 17 23 9.9 8.4e+02 2.1 1.1 9 23 716 731 714 731 0.91 18 23 5.7e-05 0.0049 18.6 1.9 2 23 875 896 874 896 0.98 19 23 0.051 4.4 9.3 0.6 2 23 914 936 913 936 0.95 20 23 0.00043 0.036 15.8 3.5 1 23 943 966 943 966 0.91 21 23 0.00026 0.022 16.5 3.2 1 23 973 995 973 995 0.96 22 23 1.6e-06 0.00013 23.5 3.4 1 23 1001 1023 1001 1023 0.98 23 23 0.0049 0.42 12.5 2.8 1 23 1029 1052 1029 1052 0.97
Sequence Information
- Coding Sequence
- ATGTCAAAAAAAGACCACCAAAGTTTTAAAAGACAAGACTATTTGGACAACCACGTTTTAAAACATCATCCAGAAAGTAACATAAATCAACAACTCAGTACAACACAGCGTTGCACACCCGGCGCTAATATTCCCGAAGAAAATCAATCATCGCGAACAGATCAATTCCATGTCGACAGCATTTCCCCAAATACAAAAACACCTCATAAATGTAAAACATGCAATAAGACGTTTTATACACGTTACAGTCTAACTGAACATGAAACCCTAAAACACTGCGGTAATGATAGACCTCATAAATGTAATATACAATTAAAAACATTAGCGACATATAATAATCATTTACTTAgtgatataaaaaataaatctcaATGGACACCTGAAGTTGATATTGCCGAGAAATATGAATGTCATTATTGTGGTAAACAACTGAAGTCATCGGGAGGATATCATTACCATATGCATAAAATGCACCCAAATCAAAAACTCCCTTATGAATGTAAAACATGCGATAAGACATTTTTTACACGTTACAGTCTAACGCAACATGAAACCCTAACTCACTCCGGTAATGATAGACCTCATAAATGTAATATttgtttgaaaagttttaaaCACTTTTCACAATTGACATCACACAAAGTGGTGCATCTTCCACCACAGCATTCATGTTCGATATGTCCAGCTAAATTTCGACGTAAACGCGATTTAGACATTCACATGCGCATTCATACAAAAGAAACCCCTTTAAAATGTGTGATGTGTTCAGAagaatttgtatttttaaaattacttaataTACATACTAAAAAATTTCACAACGATACCACCGCGCAATCTGGAAATATTAACACACTAGAAAAAGATGaatcaaaaataattaataaagatAATCGATTAGATGAAGATATTGTTAAACATGCCGAAGATAAACAAGATAGTGAAGTTGTGAAACTAACAGTAGATCATCATAAAAAACATTCTACATCTTGGGATTTCCAGAAAAACCCACTCAAAAGAAAACAATGTGGTTATTGTGGTAAACAATTTAAAACATCGCAAACATATAAAATGCATTTACttcatcataaaaaaaataaacctcgATCGAAAGCTGGCATTACTTTTCACAAGAAATATCAATGTGACTTTTGTGGTAAACAACTGATTTCATCACAATCATATCAAAACCATATACAAAGCTTCCACTTAAATAAAAAACCACCTTATAAATGTAAAATATGCAATAACAGGTATTATAAACTTCAGAGTCTAACTCGACATGAAAGCTTTCAGCACTCCGGTAATGATAGACCTCATAACTGCGATATTTGTTTGAAAAGTTTTAAGCAACTGTCAGCTTTAACAAGACATAAAAAAACGTTGCACTCTGAACTTCCACCACAGCATTCATTTTCAATATGTCCAGCTAAATTTCGACAAAAATGCAATTTAGACGCTCACATGACCACTCATACAAAAGAGGAACCATTTAAATATGACACATGTTCAGAAGAATTTGCCAACTCAAATTTACTTGAAATACATACTAAAAATTTTCACAGCGATACCACAACATCTTCACTGGAAAAAGATGAGTCAGAATTAATTAATAAAGATGATCGATTTAAAGATGTTGCAAAACTTGCCGAAGATAATCAAGAAATTGAAGCTGTTAAACTTACAGGAGATGATCATAAAATATATTCTTCATCTTCTAATAAAGATATTTCGTTGGATTCCCagaaatattcacttaaaacaaaccAATGTGGTTATTGTGGCAAACAATTAAGGACATCGCAAACATATAAAAATCATTTATGTATTCATAAGCAAACTAAATCTCAATGGACACCTGGAGTTAATATTCCCGagacaaatcaatgccatttttgtGGTAAGCAACTAAAATCATCGGCAGCATATCAATATCATATAGACAACATTCACCCAAATGAAAAACCACCCCATAAATGTGAAACCTGCAATGAGACATTTTATACACTTAAGAGTCTAATTCAACATGAACGCCTAACACATTCTGGTAATGATAAACAATCGGGAACTTTAAAACGACATAAAGTATTGCACAATTTAGACGCTCACATGCGCATTCATATGAAAGAGAAAACATTGAAATGTGAATTTGTCCACTCAAATTCACTTAAAATACATACTAAAAAATTTCACAGCGATAATGTCGCGTTTGGTAATATTAACTCATTAGAAAAGGAAGAACCAGAATTAAGAAAAGATAATCGATCAGAACAAGATTGTGTAGAAACGTCTGAGTATGAATCTAACATGTGTAAGGATTTTTCTGAAAATAGTCAACAACAATTACCTTTCACATCGAAAACACAAATTAATTATACTGAATGCTCTTTGAGTTCACAAAATATTGTTAATGAGAATTtcaaaaaacattcaaaaaaatttcacagcGATACCAACACATCTTCATTAGAAGAAGATAAATCAGGaattataaataaatatgatCGATTTAAAGATTCGCCACCATCTAATATGCACATGTCGAATAAAGATGTTGGAAAACTTGCCAAAGATAATCTAGAAATTTCTTGGGATTCTCTAAAGAACACACCCAAGAAAAACCAATGCGGTTATTGTGGCAAACATTTAAAAACATCGGCGACACTTAAAAACCATTTACGTATTCATAAACAAACTAAATCCTGGTGGACATCTGGAGCTATTATTGCCAAGGAGAATCAATGTGAAAATTGTGGTAAACAGCTTAAATCACTGGTAGCATATAAATACCATTTAAAAGAATTCCACCCAAATAAAAAACCACCTCATAAATGTAAAACATGCAATGAGACATTTTATACACGTAGCAGTCTAATTCGACATGAAACCCTGACACACTCCGGTAATGAAAGACCTCATAAATGTgatatttgtttaaaaagttttaaaacaaaaTGGGATTTGAAACAACATAAAGTATCGCACTCTGACCTTTTACAGTATTCATGTTCGATATGTCCAGCTAAATTCCGGCATAAAAGCCATTTAAACGTTCACATGCGCATTCATTCAAAAGAGAAACCATTTAAATGTGTCCTGTGTTCGGAAGAATTTGCCCACTCAAATTCACTTAAAATACATACTAAAAAATTTCACAGCGATAATGCCGCGTTTGGGAATATTAACTCATTAGAAAAGGATGTACCAGAAATAATAAAAGATAATCGATTAGAACATGATTGTGCAGAAACTTTTCAGTGTGAATCTAACATGTGTAAtgatttttctgaaaaaagtcaACAACTACCTTCCACCTCAAAAACACAAATTAGAAATACTAAATGCTCTTTGATTTCACAAAATATTGCTTATGAGAATTCCAAAGTTATATCTTTTTCATTGCCTATGGAATATATTGTTAATGATGCTTCAAATTCTTCTTCGTCGACTACCGAATTTAATTTAGTTGAACTTATGAAAGTAGAAGAATTTCAGATAATGAGTAGCATTTATAACATAGATGATTTAAGATAA
- Protein Sequence
- MSKKDHQSFKRQDYLDNHVLKHHPESNINQQLSTTQRCTPGANIPEENQSSRTDQFHVDSISPNTKTPHKCKTCNKTFYTRYSLTEHETLKHCGNDRPHKCNIQLKTLATYNNHLLSDIKNKSQWTPEVDIAEKYECHYCGKQLKSSGGYHYHMHKMHPNQKLPYECKTCDKTFFTRYSLTQHETLTHSGNDRPHKCNICLKSFKHFSQLTSHKVVHLPPQHSCSICPAKFRRKRDLDIHMRIHTKETPLKCVMCSEEFVFLKLLNIHTKKFHNDTTAQSGNINTLEKDESKIINKDNRLDEDIVKHAEDKQDSEVVKLTVDHHKKHSTSWDFQKNPLKRKQCGYCGKQFKTSQTYKMHLLHHKKNKPRSKAGITFHKKYQCDFCGKQLISSQSYQNHIQSFHLNKKPPYKCKICNNRYYKLQSLTRHESFQHSGNDRPHNCDICLKSFKQLSALTRHKKTLHSELPPQHSFSICPAKFRQKCNLDAHMTTHTKEEPFKYDTCSEEFANSNLLEIHTKNFHSDTTTSSLEKDESELINKDDRFKDVAKLAEDNQEIEAVKLTGDDHKIYSSSSNKDISLDSQKYSLKTNQCGYCGKQLRTSQTYKNHLCIHKQTKSQWTPGVNIPETNQCHFCGKQLKSSAAYQYHIDNIHPNEKPPHKCETCNETFYTLKSLIQHERLTHSGNDKQSGTLKRHKVLHNLDAHMRIHMKEKTLKCEFVHSNSLKIHTKKFHSDNVAFGNINSLEKEEPELRKDNRSEQDCVETSEYESNMCKDFSENSQQQLPFTSKTQINYTECSLSSQNIVNENFKKHSKKFHSDTNTSSLEEDKSGIINKYDRFKDSPPSNMHMSNKDVGKLAKDNLEISWDSLKNTPKKNQCGYCGKHLKTSATLKNHLRIHKQTKSWWTSGAIIAKENQCENCGKQLKSLVAYKYHLKEFHPNKKPPHKCKTCNETFYTRSSLIRHETLTHSGNERPHKCDICLKSFKTKWDLKQHKVSHSDLLQYSCSICPAKFRHKSHLNVHMRIHSKEKPFKCVLCSEEFAHSNSLKIHTKKFHSDNAAFGNINSLEKDVPEIIKDNRLEHDCAETFQCESNMCNDFSEKSQQLPSTSKTQIRNTKCSLISQNIAYENSKVISFSLPMEYIVNDASNSSSSTTEFNLVELMKVEEFQIMSSIYNIDDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -