Pinf003413.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pegoplata infirma
Gene Symbol
-
Assembly
GCA_963921195.1
Location
OY992536.1:34223426-34227937[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1 89 5.2 1.0 1 23 390 413 390 413 0.94
2 16 0.0027 0.23 13.3 1.1 1 21 478 498 478 499 0.96
3 16 2.4e-05 0.002 19.8 0.6 1 23 507 529 507 529 0.99
4 16 0.041 3.5 9.6 2.6 1 23 533 556 533 556 0.95
5 16 4.4e-05 0.0038 18.9 2.6 2 23 563 584 562 584 0.98
6 16 1.3e-07 1.1e-05 27.0 1.5 1 23 590 612 590 612 0.95
7 16 0.00013 0.011 17.5 1.4 1 23 618 640 618 640 0.99
8 16 0.00051 0.043 15.6 7.7 1 23 646 668 646 668 0.99
9 16 0.0063 0.54 12.2 0.1 1 23 674 696 674 696 0.98
10 16 0.0046 0.39 12.6 7.3 1 23 702 724 702 725 0.96
11 16 1.1 90 5.2 2.6 6 23 732 750 730 750 0.95
12 16 0.0001 0.0086 17.8 1.0 1 23 830 852 830 852 0.98
13 16 0.0015 0.13 14.1 1.2 1 23 856 879 856 879 0.97
14 16 0.00011 0.0094 17.7 5.2 1 23 885 907 885 907 0.98
15 16 1.5e-06 0.00012 23.6 1.3 1 23 913 935 913 935 0.96
16 16 0.00058 0.049 15.4 1.3 1 23 941 963 941 963 0.99

Sequence Information

Coding Sequence
ATGGATATTGAAAAAATATGTAGATGTTGTCTAGCTCTCAGTGGACCCCTATTATCCATCTATGATGGTGGGTCAGCTGGGATGGGCTGTGTTGCGGATATGTTAAAGGAAATAGCTAAACTCAAGCCACAACCAAATGACAATATGCCTGAAAAAGCATGCCTCCAATGTATAAGTGAAATTAATCGTTGCTTTATATTCAAAGTAAAATGTGAAAATTCCAATAGAACTCTACGGCAATTATTGCCAGAGGCCATTAAAGAACCCATTGATGATgtcccaacaaaaaaaattataacttcaACTGCTGCTGTGCAGACAGAAGATAAAGTTATGGTCTCTTCGCTTCAACAAACTATGGAAGAAGAAAAACCATTATTATGCCATAAAGAAATACAAACTATGGTTGAAGAAAAGTCTTTGGTATGTCATAAAGAAATACAAACTATGGTTGAAGAAAAGTCTTTGGTATGTCATAAAGAAATTAAAACTAGAATTGaagaaaaatcaaatttaaataaTGCAGAAGTGCAAACCGAATATGAAAAAATGACTGACATATCAAGCCAAActaaattggaaaaattaattGAAGATTCACCATCAGAGGAATTTGTTttctatgaaaaagtcgaaaCTCCATCCAAAAAGAGAAAGAAatctataaaatataaaatacctATGAAGAACCCATGCTTGGAAATTAATAAAGTTGAAACGGAGGAGCAAGAATCTTATATTCTATTTGAAGAttcaaatgaaaaaacaaatGCATTACCAATATCTCCTTCTGGAAAGTCTCTATCTCCATCTAAccaaaacattttaaatacagtagaagagcAAATCACGAAAGATACTTGTATATTATTAGAAGATTCTAATCAGGATTCCAATTGTTCAAATGAACAAGATTTGTATTTAGACGAAAGTCAACAAGATCTTGAAACTATTGAATCAAGTCATCAATTTGAATATGAAGTTGAAGAAAATCCTGACAACGATCAACATTCTACAACTAACCCAGATGATGAATATATTTACAGTGAAAATCTTGATGATTATGAGGAATTTGAAAGCTCTGAAATTGTATTGCAATCTTCAAAAGTATCAAAGacatttggaaaaaaatcaaagttCTCATCAATATCTAAACGTAAAGATTTATATCAGTGTTCCCAGTGtataatgacattttttagtatTAAAGTACTAAGAAGACATTTAGCCAATAGGCATAATATAACAGATGCAGAATTTATCATATCACTTGAACCAGAAATTAAAAATTCCACAACAGAAATAGAAGAACCTTCTTCGTCGAATAGCAGGAATAATGTACAGAAGACTGAAAATGTCCCTAATCCACAGTTATTGCCTAGAGAACGAGTAACATCTTCGGTCAATGAAGAAGTGCTAAATCAGATGAAATACTATTGTGATAATTGCCATGCTGGCTTCGCTCAAAGTAAAACATTAAATTATCATATGAAGCAAAATATATGTATTACGAGTAATTATCAGTGCAATCAATGTGAACGTATGTTTGTATCCCAAGATAACTTAGATGTTCATAAACTTACCCATGAAAGCCAGCATAAATGTTTAGAATGTCATGTGGTTTGTAAGACTATAGAGGAATTAAGTAATCACATGATTGAAGAACACAACAGAAATGCTCGAAATCAATGTCATGTCTGTAAAAAAGtATTCACCATGAAAACATCACTAATGGATCACTTACGTATACATAGTGGCGAAAAGCCCTTCTTATGTACTATTTGTGGAAAAAGTTTTCGACAAAATTCTAATTTACGTCAGCATTTATTACGCCATAACAATGAAAAGAAATACAAATGTGATATGTGTTCTAATGCTTATATAACCAAGTCTGAACTTTTTTCTCATACACGAACGCATACTGGAGATCATCCTTATAAATGTGATGAATGTTCAGCTTGTTTTACAACATCATGCTCTCTGCAGAAACATAAACGCAAACATACAGGTGAAAGACCATATGCTTGTGAATACTGTCCGATGCGTTTTGCAGccttaaatgttttgaaaaaccATCGTCGTATTCATACGGGAGAAAAACCATTTAAATGTAACTTTTGTGAAAAATCCTTTACACAGAAGGGTGATTGTTTAATGCATCAAAGAACACATCATAGGGATTTAACATGTTTTTGTGGttcaaaatttacgaaaaaagcgaacttaaaatttcatataaaaacaaaacatgAAAATGTATCTGAAAATGAACTTAAtagtttaattaataaaataaaaaatactgcAGAGTTAAGTATAACATTGGAAGGTGTAGTGGATGATGAACATCATGTTCTCGCAGAAGAAGACGGAGTAGATTTTGTAAACGCTTCTAATGAGGAAGAAGGTGATTTAATCGAAACATTAAGCACAAATAGAGCATCATCTAATGATAATGATGAACTCATGGAAATAGTTTTAGATGAAtttgagTGCAATCAATGTGACCATATATTTATATACAAAGAAAATTTGGCTGCTCATAAACTTACCCATAATAAAACTCATAAATGTACAGAATGTTTTAAGATTTATAAGACCGATGAAGAACTAATACAACACATTATTAAAGAACATAGCAGAAACTCTAATTTTAAATGTCATGTCtgcaaaaaagTATTTACCATGAAAACAACACTTTTAAAGCACTTTCGTATACATAACGGAAATACGGCTTTCTTATGCACTATTTGCGGTAAAAGATTGACAACTAATTCTAATTTACGTATGCATATAAGGCGTCATAACAAGGAAGCAACATACAAATGTGATAGATGTAATAACGCTTTTGTCACCCGCATTGAATTATCAACTCACAAACGAACGCACTCTGGATATAAATCTTTTGTTAATTCAAGAAATTCAAAGTACATAGCAGGTTTTACAAACGTATCAACAAATAATATTAAGCATGTTCTAAAGGTAAGTGAtactcaattttttatataa
Protein Sequence
MDIEKICRCCLALSGPLLSIYDGGSAGMGCVADMLKEIAKLKPQPNDNMPEKACLQCISEINRCFIFKVKCENSNRTLRQLLPEAIKEPIDDVPTKKIITSTAAVQTEDKVMVSSLQQTMEEEKPLLCHKEIQTMVEEKSLVCHKEIQTMVEEKSLVCHKEIKTRIEEKSNLNNAEVQTEYEKMTDISSQTKLEKLIEDSPSEEFVFYEKVETPSKKRKKSIKYKIPMKNPCLEINKVETEEQESYILFEDSNEKTNALPISPSGKSLSPSNQNILNTVEEQITKDTCILLEDSNQDSNCSNEQDLYLDESQQDLETIESSHQFEYEVEENPDNDQHSTTNPDDEYIYSENLDDYEEFESSEIVLQSSKVSKTFGKKSKFSSISKRKDLYQCSQCIMTFFSIKVLRRHLANRHNITDAEFIISLEPEIKNSTTEIEEPSSSNSRNNVQKTENVPNPQLLPRERVTSSVNEEVLNQMKYYCDNCHAGFAQSKTLNYHMKQNICITSNYQCNQCERMFVSQDNLDVHKLTHESQHKCLECHVVCKTIEELSNHMIEEHNRNARNQCHVCKKVFTMKTSLMDHLRIHSGEKPFLCTICGKSFRQNSNLRQHLLRHNNEKKYKCDMCSNAYITKSELFSHTRTHTGDHPYKCDECSACFTTSCSLQKHKRKHTGERPYACEYCPMRFAALNVLKNHRRIHTGEKPFKCNFCEKSFTQKGDCLMHQRTHHRDLTCFCGSKFTKKANLKFHIKTKHENVSENELNSLINKIKNTAELSITLEGVVDDEHHVLAEEDGVDFVNASNEEEGDLIETLSTNRASSNDNDELMEIVLDEFECNQCDHIFIYKENLAAHKLTHNKTHKCTECFKIYKTDEELIQHIIKEHSRNSNFKCHVCKKVFTMKTTLLKHFRIHNGNTAFLCTICGKRLTTNSNLRMHIRRHNKEATYKCDRCNNAFVTRIELSTHKRTHSGYKSFVNSRNSKYIAGFTNVSTNNIKHVLKVSDTQFFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-