Pinf021178.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:21048993-21055019[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00098 0.083 14.7 0.7 2 23 92 114 91 114 0.96 2 26 0.33 29 6.7 4.0 1 23 138 161 138 161 0.97 3 26 0.99 84 5.3 4.0 1 23 191 214 191 214 0.97 4 26 0.066 5.6 9.0 2.1 1 23 238 261 238 261 0.97 5 26 0.085 7.3 8.6 0.9 1 23 285 308 285 308 0.97 6 26 0.02 1.7 10.6 3.0 1 23 329 352 329 352 0.96 7 26 0.046 3.9 9.4 3.1 2 23 378 400 377 400 0.95 8 26 0.067 5.7 8.9 0.5 2 23 512 534 511 534 0.94 9 26 1.2e-05 0.001 20.7 1.6 2 23 568 590 567 590 0.97 10 26 0.00021 0.018 16.8 0.7 1 23 599 621 599 621 0.97 11 26 5.9e-06 0.0005 21.7 2.0 1 23 627 650 627 650 0.96 12 26 7.1e-05 0.0061 18.3 0.2 3 23 656 676 655 676 0.96 13 26 0.25 22 7.1 0.5 2 23 689 711 688 711 0.95 14 26 0.00084 0.071 14.9 1.1 1 23 718 741 718 741 0.98 15 26 0.0031 0.26 13.1 3.7 1 23 756 778 756 778 0.98 16 26 0.005 0.43 12.5 0.2 2 23 787 809 786 809 0.96 17 26 0.015 1.3 11.0 0.3 2 23 966 988 965 988 0.95 18 26 4.5 3.8e+02 3.2 0.2 2 23 1058 1080 1057 1080 0.94 19 26 7.6 6.5e+02 2.5 10.1 1 23 1113 1136 1113 1136 0.97 20 26 7.5e-05 0.0064 18.2 1.1 1 23 1146 1168 1146 1168 0.97 21 26 0.012 1 11.3 3.1 1 23 1174 1198 1174 1198 0.96 22 26 5e-05 0.0043 18.8 0.2 3 23 1204 1224 1203 1224 0.97 23 26 0.26 22 7.1 1.2 5 23 1261 1280 1259 1280 0.94 24 26 0.043 3.7 9.5 3.3 1 23 1287 1310 1287 1310 0.98 25 26 0.0078 0.67 11.9 1.9 1 23 1323 1345 1323 1345 0.98 26 26 7.9e-06 0.00067 21.3 0.8 2 23 1353 1375 1352 1375 0.97
Sequence Information
- Coding Sequence
- ATGTCCCGTATTCACCAGTTACGGGATGATACGAATATACCAGTACATGATTCAGTCAACGCCCACGATAATCCATTTAATTCCGATGATGAAAAACCATTGtatgaatattttaaaaaatctcctGTGCAAATAAAACAATGCAATGCTACAAGGAAAGATGAAAATGAATCTACTGGTAATACGTCTGAAGAAGAAGAAAATGAATATACTGATCCTGGAATAAACTCAGACTCTGAAAATTCGGATAACTCAATTCAAGTGCAACAAAAATCTTGTCCATATTGTTCTATACAAGTTAGTTCTCAAAGAAATTTAAGTCGTCATATTAAAGTAAAACATCCTCAAGAAGATAACAAAACGTCTGACAAAAATGTTCAAGATAATAATGATGAATTGGAAAACATCGGACATAAATGCCCATATTGTCCTTTTAAaacttatttgaaaaaaaatcagctCCGTCATATACAAAGAAATCATCCTAAAGAATTTGTAGAAATGACTATTAAAAATGAtcatgataatgatgatgatgatgatggtgatgatgacATGGAAAACACTGGATATAAATGTCCCTATTGTCCTTACAAAAACAGTTTGAAAAGAAATCAGCATCGTCATATTCAAAGAAATCATTCTCAAGAATTCGCCGAAATGACTATTAaaaaagatgatgatgatgatggtgattTAGAAAAGGTCACATttaaatgtccttattgtccttacAAAAATAGTGTAAAAAGAAACCAGCGACGTCACATTCAAAGAAACCATCCACAAGATTATGCTCAAATGTCTGTTGAAAAAGTTAATGAGAACGATGAAGACATTGATAATAGTACATataaatgtccttattgtccttacGAAAATAATGTTAAAAGAAACCAGCGTCGTCACATTCAACGTGTACATCCTCAGGAGAATCCACAAATGACTATTAAACGAATTTGTGATGATGAAGAAAGCACTGGGCATCCATGTCCACATTGTCCTTACACCACTAGCTTGGAAAAAAATCGGCGGCGTCACATTAAACGTGCTCATCCTCAAGAATATCTTAAATTGATGGAAATTCCACATGAAGATGATGTCTTTATAGCTAAGTGGAAACAAGAATTAGAATGTGATATATGTAAGAATActttcaaacatttttatttactaaGCCAACATTTTAAAAGTGATCATTCAAATGCTGGTGCCCCCTATGTCAAGTGTTGTGAGATTAAACTATTAAGGCGTATAGAAATAGTGAGACACATACAATTTCATGACAATGAACCACCAGATGATCCTGATCCAAGCAACACCACTAATTTAATGGAAAATAATGATAATGCTATTGAAATAACTTCCAATGAATGTCAATTTTGTGGCTTTAAAGTCAACCAGATGCGAAGCATGCGTGGTCATTTTAAAATAATGCACCCTAAACAGTATGCCAAATTGCCTGCCATACCTACAGGTATTGAAAAGGAGCTTGAACATGATGCCTACATTGCTAAATGGCAACAATATTTAGAATGTGATATATGTAAGAACTCATTTCAAAATTTCGGTTTATTAAAAGATCATTTCCAAAGCGAACACCCAAATATTAAGTACTATTTCAAATGTTGTGAGGTAAAACTATTTAGTCGTTCGCAAATTGCCGATCACATACGTATACATGTGGAGCCAGATAGTTCTAAATgtaagatttgtggaaaattttattcTTCTGCAACAATGCTAAGAGTTCATATGAAACGGAAACATAGCGAAAGTAGAAACCAACGTCCATATAAATGTGATCTCTGCCCAAAACGTTACAAACAATTAACAAAACTTAAGGAACATATCGGTATTCACATCACGGAAAAGAATTATACGTGTAAAGAATGTGATAAGAAATTTTCTACCAATGAACTTCTTATAAAACATACAAATCAGTATCATTTTGGAAGTCGTCTTTGCGATCAATGTGGTAAAACATTTGCCACAAGATACGCCCTAAAGGATCATCTTATTGGGCATGCCAACACTTCAACAGAGATCGGGCCAGAAAAATGGAATTGTGATATATGTGCCattgaaataagttccaagataCATTTTAAACAGCATATGTTTACAGTTCATAATGACACAACGAGTGTTTTCCAATGCCCGGaatgtgaaaaaatttattttagtaaaatttcttTATACCAGCATAAGAAAACTATCCATGATGGTAAAAAACTGCAAAAAGATGATACTACTAAGCGTAAATTTCAATGTGAGAtatgttttaaacaattttgtgctGCACAATCACTACGCAAACATAAATTAACACACACTTTTAATGGGAAAACTCCAATACAGTGTTCATATTGCGATATTTCAGTAAAGGATAAACAAAATTTACCTCGTCATGTAAAACGTGCACATCCTCAACAATAtgaagaatttgaaaaaaatagaaaacaatcTACAAACCAAAAACAATTTATTGAAAAGCTAAAATCGATTCAGCATGAGAAAGAAAATGACACAAATATACCTGAACATGATTCTGTTATCCTACAAGATAATCCATTTAATTCCGATGACGAAATGCCACTGTATGAATATTTAAAGAAATCTCTCCTGGAAACAAAAGATATACATACTTTTAAGGATGAGGAAAATAAACCTAGTGATAAAACATCTGAGAGATCTGGAAACGAATTTACAGATCCAGAAATTCATTCGGAATCGGAAAATTCTCCCTTGGaaataaaagatattaatactttTAAGGAAGAGGAAAATAAAGCTAGTGATAAAACATCTGAGAGATCTGAAAATGAATTTACAGATCCAGAAATTCAATCGGAATCGGAAAATTCCGATGACCTTACTCAAATTAAAAAAGTTCCTTGTCCATATTGTTCAGTACAAATTGGTACTCGAAAAAATTTACGTCGTCATATTAAATTAAAACATAATAAGGaatatgtcaaaaaatatttaagagtTCATAATGACGACATGGACAGAGGCAAACATGATTGCCCTCATTGTTCttacaaaaataatattgaaagGTACGTTCGCCGTCATATCAAAAATGTTCATCCCCAAGAATATCTTAAATTGCTTGAAATTCCAGATGAAGATGATGTGTTTATAGCAAAATGGCAACAACATTTAGAATGCGATATATGCAAGGATTCATTACAAAATGTCAGTTTACTTCGAGATCACTTCAAAAGTGAGCATCCAAGTACCAAGTACTATTTTAAATGTTGTCAAGTAAAACTATTTTCTCGGACCGAAATAGCCGACCACATACGAATTCATGTGGATCCAAATTGTTTTAAATGTGAAATCTGTGGACTATGCTGTAGCTGTAAAAGAACGCTAAGGTATCATAAAAAACGGAATCATAGCGACGAAAGTATAAATCAACGTCCATTTAAATGTGATATTTGTTCAAAAAGTTACACACAAAAGTTAAAACTAAAAGAACATATGGGTATACACCTAACGGAAAAGAATTATCCTTGTAAGGAATGCGATAATAAGAAATTTTCCACCCATGAACTTCTTATGAAACATACAAATCAATATCATCGTGGATCTCGTCTTTGCGATCAATGTGGTAAAACATTTATTACTAGATATGCCTTGCAGCAACATCTCGTTGTACATTCTCCTAACTTGGAATCAACAACAATTAAATCAACAAATGTTAAACCTACAGAAAGTAAACCTGCAACAGTAAATCATCGAATCAAACTACCTCGAAAATGGAATTGTATATGTGGCACTGAATTTAATTCAAAGTTAAAACTAAATAAGCATAAGTTTACCGTTCATAACGATGCGTCTTATATGTTCCAATGCAGTGATTGTGTTAATATCTATTTTAGTAATCACACTTTACGCAATCATAGGAAAACTATCCATGAAGGTATAAAACGGCAAAAAGATAAAGACGTTTTGCATAAATGTGAAATATGTTTTAAAGAACTTTCGACTGCGCAGAATCAACGTCTACACATGCTAACACATGCCAATGATAATATTCGTAGTCAGTGTGAATATTGCGATATTTCCGTAAAGTATAAATCAAATTTGAATCGCCATTTGAGAAAAGTACATCCTGAAGAGTATAAAAAATCCATATCCATGAACCTAAGGGAAATTAACAAAAATCTCAATTTAAATCATCTACAGATAGACATTTAG
- Protein Sequence
- MSRIHQLRDDTNIPVHDSVNAHDNPFNSDDEKPLYEYFKKSPVQIKQCNATRKDENESTGNTSEEEENEYTDPGINSDSENSDNSIQVQQKSCPYCSIQVSSQRNLSRHIKVKHPQEDNKTSDKNVQDNNDELENIGHKCPYCPFKTYLKKNQLRHIQRNHPKEFVEMTIKNDHDNDDDDDGDDDMENTGYKCPYCPYKNSLKRNQHRHIQRNHSQEFAEMTIKKDDDDDGDLEKVTFKCPYCPYKNSVKRNQRRHIQRNHPQDYAQMSVEKVNENDEDIDNSTYKCPYCPYENNVKRNQRRHIQRVHPQENPQMTIKRICDDEESTGHPCPHCPYTTSLEKNRRRHIKRAHPQEYLKLMEIPHEDDVFIAKWKQELECDICKNTFKHFYLLSQHFKSDHSNAGAPYVKCCEIKLLRRIEIVRHIQFHDNEPPDDPDPSNTTNLMENNDNAIEITSNECQFCGFKVNQMRSMRGHFKIMHPKQYAKLPAIPTGIEKELEHDAYIAKWQQYLECDICKNSFQNFGLLKDHFQSEHPNIKYYFKCCEVKLFSRSQIADHIRIHVEPDSSKCKICGKFYSSATMLRVHMKRKHSESRNQRPYKCDLCPKRYKQLTKLKEHIGIHITEKNYTCKECDKKFSTNELLIKHTNQYHFGSRLCDQCGKTFATRYALKDHLIGHANTSTEIGPEKWNCDICAIEISSKIHFKQHMFTVHNDTTSVFQCPECEKIYFSKISLYQHKKTIHDGKKLQKDDTTKRKFQCEICFKQFCAAQSLRKHKLTHTFNGKTPIQCSYCDISVKDKQNLPRHVKRAHPQQYEEFEKNRKQSTNQKQFIEKLKSIQHEKENDTNIPEHDSVILQDNPFNSDDEMPLYEYLKKSLLETKDIHTFKDEENKPSDKTSERSGNEFTDPEIHSESENSPLEIKDINTFKEEENKASDKTSERSENEFTDPEIQSESENSDDLTQIKKVPCPYCSVQIGTRKNLRRHIKLKHNKEYVKKYLRVHNDDMDRGKHDCPHCSYKNNIERYVRRHIKNVHPQEYLKLLEIPDEDDVFIAKWQQHLECDICKDSLQNVSLLRDHFKSEHPSTKYYFKCCQVKLFSRTEIADHIRIHVDPNCFKCEICGLCCSCKRTLRYHKKRNHSDESINQRPFKCDICSKSYTQKLKLKEHMGIHLTEKNYPCKECDNKKFSTHELLMKHTNQYHRGSRLCDQCGKTFITRYALQQHLVVHSPNLESTTIKSTNVKPTESKPATVNHRIKLPRKWNCICGTEFNSKLKLNKHKFTVHNDASYMFQCSDCVNIYFSNHTLRNHRKTIHEGIKRQKDKDVLHKCEICFKELSTAQNQRLHMLTHANDNIRSQCEYCDISVKYKSNLNRHLRKVHPEEYKKSISMNLREINKNLNLNHLQIDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -