Pinf041896.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pegoplata infirma
Gene Symbol
-
Assembly
GCA_963921195.1
Location
OY992540.1:214059140-214063878[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00012 0.01 17.6 1.1 2 23 153 174 152 174 0.97
2 15 0.00081 0.069 15.0 4.3 1 21 180 200 180 201 0.95
3 15 0.8 68 5.5 6.1 1 23 270 292 270 292 0.95
4 15 2.7e-05 0.0023 19.6 4.4 2 23 302 324 301 324 0.95
5 15 3.5e-05 0.003 19.2 3.0 1 23 410 432 410 432 0.98
6 15 0.011 0.93 11.4 3.4 1 23 438 460 438 461 0.95
7 15 0.033 2.8 9.9 0.7 1 23 482 505 482 505 0.95
8 15 6.3e-06 0.00054 21.6 2.2 1 23 511 533 511 533 0.99
9 15 3.2e-06 0.00027 22.5 2.4 1 23 539 561 539 561 0.99
10 15 1.9e-07 1.6e-05 26.4 1.8 1 23 567 589 567 589 0.96
11 15 0.012 1 11.3 4.1 1 23 595 617 595 617 0.97
12 15 0.0031 0.26 13.2 2.1 1 23 623 645 623 645 0.95
13 15 1.6e-06 0.00014 23.5 1.0 1 23 651 673 651 673 0.98
14 15 6.7e-07 5.7e-05 24.7 1.7 1 23 679 701 679 701 0.99
15 15 0.014 1.2 11.1 0.1 1 19 707 725 707 726 0.97

Sequence Information

Coding Sequence
atgtttatatccgAAATATATGGGCGCGTATGTCGCGTGTGCATGTGTAAATCCAATAATTTACATGATTTAAATGAAACTACTGAAGAGCGTCTCACCATGAACGAAATGCTGGCGAAAACTGTCTCAAGTATTCAGGCCAACATCGAATTTCCCGTGCCTCAAGAAATTTGTGATATATGTATGGAGCATTTACAAATTTCATATCGATTTCAACAATTATGCACAAGCACCAATGAACAAATGTTTAAGATATGGGAACAGTCGCAAAAAGACGAACTGAAACAAACGGATTCTGACATAAAACTTGGTGAACAGATTAGTGACAACGTACCGGATCCAATCAAAATCGAATATGATATTGAGATTGATAAATTGGTAGCAGAAGGCGAAAGTGAAAACCAAGAAAAATCGTTGAAAAATGGATCTACTGGCAAACGAAATAATGATCTTTTGACATGTCTTGAGTGCAAGGCCTCTTTTTCAAAACCTTTTCAATTGGCTAGACATCGTCGTAAACACAAGACCACTCATCCTTTTACGTGTCTTCATTGTACGCATCGCTTTAAAACTAACAGTTTGTTACAAAAACATGTTAAAAGTTGTCAAACTGAAAAGAAAAGAAGACTTCCAATTAAAAATTACAAAGAAGATGATGAAGACGAAGATGTTCCTCTTAGCTCATTCAAGAAAAAAGAAACTAATAAAGATGAAAAAGAAGAAGGTGAAGCAAGTGATGATTCGGACAATCCTGATTCAAAGAAACCAAAATCAAGAAAAATTAAACCTAGTGAGACAAAGACATCATATCAATGTTCCAAATGTAAAAGCTATTTTAAATATGGCTATCAACTTACTAAACACAATTGTGGTCACAATGACGAGAATGATTCTTATATATGTAAATGTGAGATATGTAATAAACGCTTTACTACAGAAAATATGTTGCAAAAACATATGAGCAGCAAACACCAGAATATTAAATCACCCACAAAGCCTTCAGATAAACAAGAGAAAGTttcaacaaaaactaaaaattcgattgaaaaatcaaaagaaaatattaaTGATAACGACGATGACGAAGTCGAAATGATGGATGATAATGACAATGATAATTGGAATGACATGAATAATTCCGAGACGACAGAAGATGATAGTGATTCTGATTTTGGAGACAACAAAGATAAAGCAGCAAAACCTAAAACGGAAACTGTTACTCATCAGTATCAATGTAACGAATGCGATGCttcatttaaatttgaaaaacaattGCAAAGACATTTTAAAAAACATACCGAGGCACATCGTTTCGTTTGTGTTTTATGTTGGGATCGCTTTAAATATCCACATATGTTACAAAAGCATATGGAAAAACATCATCCGGAAGAGAATCCAAACCCTAAAGTGGTAGAAACGAAAACTGAGAATTTGGAAAAGACACACATTTGCAGCTATTGTACATCAGCCTATTCAAATATTGGCGGTTTAGCTCAACATATGAGCAAAAAACATCCTGAAATTAAACCTTTTAAATGTGATAAATGTGAAAAAACGTTTGTAGTCGAAGAACATTTAAAGATACACATGAATCGTCACATGggaattaaaaatttcaagtgtgATCTTTGTGATAAAtCATTTTCGTTTAAATTCGCTATGAAACAACATATGCGTATACATACCGGAGATTTAAATTATCTTTGTACATTATGTGGCAAAAAATTCTATCGACCTAGTAATTTGCGTCAACATATGCAACGTCATGGCGACGATAAGCCTTACACATGTCCACATTGTCCAAAACGTTTTAAATGTCCTTCAGATCGTTATATACACTTGATGTCTCATCAAGAGGGTAAAAATCACGTTTGTCAAACATGTGGAGCTCGTTTTTCCAGAGTGGATACTTTACATCAACATCAAGTTTTACACACTGGTGCGAAAAATCATAAGTGTGATCAATGTCCAATGGCatTTGCCCGTGCTATGAATTTAAATCGTCATTTACGCACCCATACTGGTGAGAAACCATATAAATGTAAATTTTGCGATAAAGCCTATGCACAAAGTAATGATCTTAATAAACATTTACGTACACATGTGGGTGAGAATACCTATATGTGTTCTCAGTGTCCAGCAGCTTACAAGTATCAAGCTGATTTGAAAAATCATGAGTGGGAACACTATCGTAAACAGAAGGAAGCAGAACAATTAGCTAAAGATGAATTAGCAGGTTTAAAAATGAAAGAAGAGCAAACTATAATGGAAGctaatgtgtaa
Protein Sequence
MFISEIYGRVCRVCMCKSNNLHDLNETTEERLTMNEMLAKTVSSIQANIEFPVPQEICDICMEHLQISYRFQQLCTSTNEQMFKIWEQSQKDELKQTDSDIKLGEQISDNVPDPIKIEYDIEIDKLVAEGESENQEKSLKNGSTGKRNNDLLTCLECKASFSKPFQLARHRRKHKTTHPFTCLHCTHRFKTNSLLQKHVKSCQTEKKRRLPIKNYKEDDEDEDVPLSSFKKKETNKDEKEEGEASDDSDNPDSKKPKSRKIKPSETKTSYQCSKCKSYFKYGYQLTKHNCGHNDENDSYICKCEICNKRFTTENMLQKHMSSKHQNIKSPTKPSDKQEKVSTKTKNSIEKSKENINDNDDDEVEMMDDNDNDNWNDMNNSETTEDDSDSDFGDNKDKAAKPKTETVTHQYQCNECDASFKFEKQLQRHFKKHTEAHRFVCVLCWDRFKYPHMLQKHMEKHHPEENPNPKVVETKTENLEKTHICSYCTSAYSNIGGLAQHMSKKHPEIKPFKCDKCEKTFVVEEHLKIHMNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQVLHTGAKNHKCDQCPMAFARAMNLNRHLRTHTGEKPYKCKFCDKAYAQSNDLNKHLRTHVGENTYMCSQCPAAYKYQADLKNHEWEHYRKQKEAEQLAKDELAGLKMKEEQTIMEANV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-