Pinf002208.2
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- CAWUER010000736.1:7912-20712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0026 0.22 13.4 1.4 2 23 122 143 121 143 0.90 2 21 0.0001 0.0086 17.8 2.2 1 23 149 171 149 171 0.98 3 21 0.00011 0.0093 17.7 2.5 1 23 177 199 177 199 0.98 4 21 0.0027 0.23 13.3 3.7 1 23 205 227 205 227 0.98 5 21 0.00088 0.075 14.8 4.1 1 23 233 255 233 255 0.98 6 21 0.0022 0.19 13.6 3.4 1 23 261 283 261 283 0.97 7 21 8.1e-05 0.0069 18.1 6.6 1 23 289 311 289 311 0.98 8 21 0.00013 0.011 17.5 1.8 1 23 317 339 317 339 0.98 9 21 0.0026 0.22 13.4 1.4 2 23 518 539 517 539 0.90 10 21 0.0001 0.0086 17.8 2.2 1 23 545 567 545 567 0.98 11 21 0.00011 0.0093 17.7 2.5 1 23 573 595 573 595 0.98 12 21 0.0005 0.043 15.6 2.9 1 23 601 623 601 623 0.98 13 21 0.00088 0.075 14.8 4.1 1 23 629 651 629 651 0.98 14 21 0.0022 0.19 13.6 3.4 1 23 657 679 657 679 0.97 15 21 8.1e-05 0.0069 18.1 6.6 1 23 685 707 685 707 0.98 16 21 0.00013 0.011 17.5 1.8 1 23 713 735 713 735 0.98 17 21 0.0026 0.22 13.4 1.4 2 23 914 935 913 935 0.90 18 21 6.6e-05 0.0056 18.4 1.3 1 23 941 963 941 963 0.98 19 21 0.00011 0.0093 17.7 2.5 1 23 969 991 969 991 0.98 20 21 0.00049 0.042 15.6 4.7 1 23 997 1019 997 1019 0.98 21 21 0.00088 0.075 14.8 4.1 1 23 1025 1047 1025 1047 0.98
Sequence Information
- Coding Sequence
- ATGATCTTTGCTCAGATAATGAATCTCAAGATGTTTTTGGAAATCTCTAAAACTGAATACAAATTTGAAGAAACTGTAATAAATGCAGTAATTAAACCTAGtcaatccaaacaaaaaaatatcattctAATTGATGATGGAAATGAAACTTTTAATATACAAAATTTCAGAGATGTTAAAGAGGAATTTCTTTCAGATAGTGAATGTGTAGATAAAATGGAAGTTAAAAATGAAATGTCTTCAACTAATGATATAAACAGCATAGTTAATACATTTCAGGGTTTTGAAGAGAATTCCAATAGTCAAGATTCCCTACAATTACAAAACAATACAACAGAGAGTCTGACAAAGTCTAAAGTTTTAATTTGCAAATTTTGTCCTGTAACTTTTACTTCGAAAAACTTGTGGCGACATCACATAAATGAACACGGTGGTGAACGCCCATACTCTTGTTCATTCTGTAAAAAAGCATTTATACATAAAGGTACTTTAACGATACATGAAAGGATCCATACTGGCGAACGCCCCTACTCCTGTTcattctgtaaaaaaacatttacgCAGCTGAATGCCTTAAAAACACATGAAAGACTACATACTGGCGAACGCCCTTTCTCCTGTTCATTCTGTAAAGAAACATTTACGCGACGGGATCGTTTTATTTCACATGAAAGGAAACATACAGGCGAACTCCCCTACTCCTGTTCATCCTGTAAGAAGACATTTGCACATCAGAGTGGCTTACATATACATGAAAGGCTCCATACTGGTGAACCTCCCTACTCCTGTTCATTCTGTATTAAAACATTTACTCATAAAAGTAGTTTAATGGCACACGAAAAGCTCCATTCTGACGAACGTCCCTACTCCTGTTCAttctgtaataaaacattttcacATAAACATAATTTAATTAGTCATGAAAGGCTCCATACTGGCGAACGTCCCTACTCCTGTTCCTTCTGTAAGCAAACATATGCTTCTAAAAGTAGTTTAACTAGTCATGAAAGGATACATACTGGCGAACGTCCCTACTCCTGTTCtatctATGTTGGCGTTTTCAAAAATCATCAAAAGATTCACTCAGAATTAGTACAAAACACATCATGTGACTTGAATTCTAATCAACCAGAAGAGCAGCCTTTTCTTAAAGATCAAACGTCCATAAAAAATGATCTTTGCTCAGATAATGAATCTCAAGATGTTTTTGAAGTGGAAAACATTTTGGAAATCTCTAAAACTGAATACAAATTTGAAGAAACTGTAATAAATGCAGTAATTAAACCTAGtcaatccaaacaaaaaaatatcattctAATTGATGATGGAAATGAAACTTTTAATATACAAAATTTCAGAGATGTTAAAGAGGAATTTCTTTCAGATAGTGAATGTGTAGATAAAATGGAAGTTAAAAATGAAATGTCTTCAACTAATGATATAAACAGCATAGTTAATACATTTCAGGGTTTTGAAGAGAATTCCAATAGTCAAGATTCCCTACAATTACAAAACAATACAACAGAGAGTCTGACAAAGTCTAAAGTTTTAATTTGCAAATTTTGTCCTGTAACTTTTACTTCGAAAAACTTGTGGCGACATCACATAAATGAACACGGTGGTGAACGCCCATACTCTTGTTCATTCTGTAAAAAAGCATTTATACATAAAGGTACTTTAACGATACATGAAAGGATCCATACTGGCGAACGCCCCTACTCCTGTTcattctgtaaaaaaacatttacgCAGCTGAATGCCTTAAAAACACATGAAAGACTACATACTGGCGAACGCCCTTTCTCCTGTTCATTCTGTAAAGAAACATTTACGCGACGGGATCGTTTAATTTCACATGAAAGGAAACATACAGGCGAACTCCCCTACTCCTGTTCATCCTGTAAGAAGACATTTGCACATCAGAGTGGCTTACATATACATGAAAGGCTCCATACTGGTGAACGGCCCTACTCCTGTTCATTCTGTATTAAAACATTTACTCATAAAAGTAGTTTAATGGCACACGAAAAGCTCCATTCTGACGAACGTCCCTACTCCTGTTCAttctgtaataaaacattttcacATAAACATAATTTAATTAGTCATGAAAGGCTCCATACTGGCGAACGTCCCTACTCCTGTTCCTTCTGTAAGCAAACATATGCTTCTAAAAGTAGTTTAACTAGTCATGAAAGGATACATACTGGCGAACGTCCCTACTCCTGTTCtatctATGTTGGCGTTTTCAAAAATCATCAAAAGATTCACTCAGAATTAGTACAAAACACATCATGTGACTTGAATTCTAATCAACCAGAAGAGCAGCCTTTTCTTAAAGATCAAACGTCCATAAAAAATGATCTTTGCTCAGATAATGAATCTCAAGATGTTTTTGAAGTGGAAAACATTTTGGAAATCTCTAAAACTGAATACAAATTTGAAGAAACTGTAATAAATGCAGTAATTAAACCTAGtcaatccaaacaaaaaaatatcattctAATTGATGATGGAAATGAAACTTTTAATATACAAAATTTCAGAGATGTTAAAGAGGAATTTCTTTCAGATAATGAATGTGTAGATAAAATGGAAGTTAAAAATGAAATGTCTTCAACTAATGATATAAACAGCATAGTTAATACATTTCAGGGTTTTGAAGAGAATTCCAATAGTCAAGATTCCCTACAATTACAAAACAATACAACAGAGAGTCTGACAAAGTCTAAAGTTTTAATTTGCAAATTTTGTCCTGTAACTTTTACTTCGAAAAACTTGTGGCGACATCACATAAATGAACACGGGGGTGAACGCCCATACTCTTGTTCATTCTGTAAAAAAGCATTTATACATAAAGGTGCTTTAACGATACATGAAAGGATCCATACTGGCGAACGCCCCTACTCCTGTTcattctgtaaaaaaacatttacgCAGCTGAATGCCTTAAAAACACATGAAAGACTACATACTGGCGAACGCCCTTACTCCTGTTCATTCTGTAAAGAATCATTTACGCGACGGGATTGTTTAATTTCACATGAAAGGAAACATACAGGCGAACTCCCCTACTCCTGTTCATCCTGTAAGAAGACATTTGCACATCAGAGTGGCTTACATATACATGAAAGGCTCCATACTGGTGAACGGCCCTACTCCTGTTCATTCTGTATTAAAACATTTACTCATAAAGACAAGGACCGCAAAGATATCTTGGAACGTCATAGAGAGGGACGTTTGGCTGCTTAG
- Protein Sequence
- MIFAQIMNLKMFLEISKTEYKFEETVINAVIKPSQSKQKNIILIDDGNETFNIQNFRDVKEEFLSDSECVDKMEVKNEMSSTNDINSIVNTFQGFEENSNSQDSLQLQNNTTESLTKSKVLICKFCPVTFTSKNLWRHHINEHGGERPYSCSFCKKAFIHKGTLTIHERIHTGERPYSCSFCKKTFTQLNALKTHERLHTGERPFSCSFCKETFTRRDRFISHERKHTGELPYSCSSCKKTFAHQSGLHIHERLHTGEPPYSCSFCIKTFTHKSSLMAHEKLHSDERPYSCSFCNKTFSHKHNLISHERLHTGERPYSCSFCKQTYASKSSLTSHERIHTGERPYSCSIYVGVFKNHQKIHSELVQNTSCDLNSNQPEEQPFLKDQTSIKNDLCSDNESQDVFEVENILEISKTEYKFEETVINAVIKPSQSKQKNIILIDDGNETFNIQNFRDVKEEFLSDSECVDKMEVKNEMSSTNDINSIVNTFQGFEENSNSQDSLQLQNNTTESLTKSKVLICKFCPVTFTSKNLWRHHINEHGGERPYSCSFCKKAFIHKGTLTIHERIHTGERPYSCSFCKKTFTQLNALKTHERLHTGERPFSCSFCKETFTRRDRLISHERKHTGELPYSCSSCKKTFAHQSGLHIHERLHTGERPYSCSFCIKTFTHKSSLMAHEKLHSDERPYSCSFCNKTFSHKHNLISHERLHTGERPYSCSFCKQTYASKSSLTSHERIHTGERPYSCSIYVGVFKNHQKIHSELVQNTSCDLNSNQPEEQPFLKDQTSIKNDLCSDNESQDVFEVENILEISKTEYKFEETVINAVIKPSQSKQKNIILIDDGNETFNIQNFRDVKEEFLSDNECVDKMEVKNEMSSTNDINSIVNTFQGFEENSNSQDSLQLQNNTTESLTKSKVLICKFCPVTFTSKNLWRHHINEHGGERPYSCSFCKKAFIHKGALTIHERIHTGERPYSCSFCKKTFTQLNALKTHERLHTGERPYSCSFCKESFTRRDCLISHERKHTGELPYSCSSCKKTFAHQSGLHIHERLHTGERPYSCSFCIKTFTHKDKDRKDILERHREGRLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -