Pinf028301.2
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- bab1
- Assembly
- GCA_963921195.1
- Location
- OY992539.1:3834725-3836465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-17 5.3e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 8.6 2.3e+04 -3.4 2.5 4 15 193 207 190 216 0.65
Sequence Information
- Coding Sequence
- atgttggaaaattctCATGCTTGGATGGGTGCTTCTGGTTCTTCAATAGCAGCAGATAGTTATCAGTATCAATTACAATCAATGTGGCAAAAATGCTGGAATACAAATCAAAGTTTAATGCATCATTTGCGCTTTCGTGAACGTGGTCCGCTAAAATCATGGCGTCCCGAGACCATGGCCGAAGCCATCTTTAGTGTACTAAAGGAGGGTTTGTCACTTTCGCAGGCAGCTCGGAAATACGATATACCATATCCCACATTTGTTTTGTATGCCAATCGAGTTCACAATATGCTGGGTCCTTCAATCGACGGTGGTCCTGATCTGAGACCCAAGGGGAGAGGACGGCCGCAACGCATACTGCTAGGAATTTGGCCGGATGAACACATAAAGGGAGTCATAAAAACTGTTGTCTTCCGTGATGCCAAAGATCTGAAAGATGAGGGCCTTGCACACATGCCTTATGGCCGGCATTCGCCCGTTTTTCCATTTCAGGAAGGACCTCTCAATTATCCTGGAGTTGGTGGACAGTGTCCTAATGGTATGCCTGGCTCCACTGGAGACCAGATGTCGCAGGAAGCTACTGCAGCGGCTGTGGCGGCTGTTGCTCACAATCTTCGTCAACAAATGCAAATGGCAGCAGCggcccaacaacaacagcagcttGGAGAAGGACCAGGACCATCGAACCTATTCAATCTTCCACCACATTTAGCCAGTGGAGGACCTATGTCTGGTCCACCCGGCTCTGGAGGTATACCTCTTCCTAAAGCTAGTATTTCCCCGGCACTTAGTTCTACATCAAATACGGCTGGTGTAGGCTCTCTGATGGGGCCTCGACATGTTCCTTCTCCATGCGGACCACCTTTACCGGGTATGCCCCAAATGCCACCGGGGATGGCAGTCGCTTTACATATGGCAGGTGGTCCGGGTGGACGATGCGATCCAAATGCCATGTTAAGTCAGCAACAACAGCACCAGCTGCAACAATTACATTTGCAGCAACAACATGCCCTccatcagcagcagcagcaacagcagcaacaacaacagaaaCATCAGCAGCATCAATTGGCATTTGGCCACCATACTCAAACATTAAGTCATCCATCTGTTTCTGGTACATCCACATACTCACACGTCCAGCAGACAACGCAAAAAACAACGACGGCTTCCTCTACGAAATCAACTTCCTCCACTGCATCGCCGTCCAGACGCACCAGTCCGCATAGTATTACGCCAATGCATTCCCCATTAACTGAACTTGGACTAGAAATGAGCTTAAGGCCCACCCGCACCTTTTCACCCTCTCGTCTATTTTCCGATGACTTATCGGATATTGTCGGTGTAATGCCCTCACATTCGACATCAATGTCCTCATCAACACCATCAGTGACGGCAGCAGTGACTACAGCCACGATAACAGCCCATAGTAGCATAAACACTAGCACCTCATCGTCAACATCATTATCTCAGCCTTTAGCGTCCACATCTTCAGTAACAACAACAGCCGCTGCAGGTACAGTGGGAAGTACCGCCTCCGCAACAAGCAACATAAGTTCCACGGGAATAAAACTCGAACCAATTACGACAAGTAGCGATTAA
- Protein Sequence
- MLENSHAWMGASGSSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLAHMPYGRHSPVFPFQEGPLNYPGVGGQCPNGMPGSTGDQMSQEATAAAVAAVAHNLRQQMQMAAAAQQQQQLGEGPGPSNLFNLPPHLASGGPMSGPPGSGGIPLPKASISPALSSTSNTAGVGSLMGPRHVPSPCGPPLPGMPQMPPGMAVALHMAGGPGGRCDPNAMLSQQQQHQLQQLHLQQQHALHQQQQQQQQQQQKHQQHQLAFGHHTQTLSHPSVSGTSTYSHVQQTTQKTTTASSTKSTSSTASPSRRTSPHSITPMHSPLTELGLEMSLRPTRTFSPSRLFSDDLSDIVGVMPSHSTSMSSSTPSVTAAVTTATITAHSSINTSTSSSTSLSQPLASTSSVTTTAAAGTVGSTASATSNISSTGIKLEPITTSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370897;
- 90% Identity
- -
- 80% Identity
- -