Basic Information

Gene Symbol
ct
Assembly
GCA_963921195.1
Location
OY992540.1:223442663-223568891[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 9.4e-27 1.5e-22 80.7 0.0 3 72 957 1027 955 1032 0.94
2 4 2.8e-31 4.4e-27 95.2 0.0 3 77 1383 1458 1381 1460 0.96
3 4 3 4.7e+04 -7.0 4.1 13 38 1519 1544 1511 1547 0.85
4 4 1.1e-30 1.7e-26 93.3 0.0 3 76 1641 1715 1639 1718 0.96

Sequence Information

Coding Sequence
ATGAATGCGTTGCGCAAAAGGCATtggcatcatcatcatcatcatcaacaacaacagcagcaacaaaaacaacagcaacaacaatatcGTCATAATAATCAACAACAACTACATCATGTTTTATGTGGTAGGGAGAGAGCTACCTTAGCTGAAAAGGAAGTAAACACTCTGAAAGAACAACTATCCACCAATTCACCAAACGCTGAATCAGACTTAGATAATAACGGTGAATTAGCTTTAGCTACTAGCACAGCTAACAATTCAATTGATTCCAATAACACCGAAGCTTTAAACGCTTTATCAACAGAAATCCCACCAAATAATAAACTCTTATCGGCCTCATTCAATAATAACAATACAAAATTGTTAAACAGTGTTGCTGCAGCTATAACACTGCATCAGAACGGTGGTAATCTATTGGCAACAACGCCATCACCCTCACCGCCACTGTCAGACAGTGGTAATAACGGCAGTAGTAACGACCAGCAACAGCAACTGAACGGTTGCATAAATCCCAAATTGTTTTTCAATCACGCCCAACAGGTAATGATGATGGAAGCTGCAGCTGCTGCAGCGGCCGCCGCGGCTGCTGCTGCTGCAGTGCAACAGCAACAATCACCTATGCATTCACCACAACCTGCTACACACCAACAACAGCATCAGCAACAGGATGCACACGAAGAGAATAATATGCCACAAAAACCCACCAATACAAAGGAAATCAAAGATAATTTAGCATTAGAAAATGCAACAAACCCAAACTCCAAATTAACAGCAAGTGATACTCAAACACCGGATAAACGTGACATTAATAACACTCATAATGAGTTGGAAGaagagcaacaacaacaacagcatggAAATATAAATGCTGCTGCTACAGATAGTGAACATAGTAATAATAATATCATCAATAGTTTTAATAGTGATAGTAATAAAAATAGTATAAATTCAATGGTTACAAATCAAAATTGTACGAAAACGGAAATAGAAAAGACAAAAGCCCTACAACAAGTAGTTGCAGATGAAGATGAGCATATGGATGCGGAAGAACTAAGAGGGAAATTATTAGATAATAATAATTATAACAAAGAAACGAAAAACAATCATATGGAATTTGTAGCTGCCAAAGATAAAGAGATTAAAGCCTTATTTGAAGAAGTTAAACGTTTAAGATCTTTAGAACAAACACATTTGGTACAAATCCATAGACTAGAAGAACATTTGGAATCCAAACGTCAACATATTATGCGTTTGGAGGCTAAATTAGATAAACAACAAGTCAATGAAGCTTTACTTGAAtcccaacaacaacagcagcagcaacaagaagaaaaagaaaaagaagaattgGAAAATTCCAaagaaaacgaaaaagaaatcatAGAAATAGAACCAGATAAAGAAGACGAGGAGGAAGATGAAGTACAAGAAGTTGAGAAAGATAGAAACTGTGATTTAACCCAACATATTGAAGATGATCAGGATAATGAAGAAGATGATGATGAAGACTTTGAAGATGTACAAGAAACTCACCAAATGTCCGTTGATAGAGAGAGAAACTCTAGTATTAAGGACTCTTTAAATGAAATCAAAAAGGAAACACAatctCCTCTATCGTTAGACTCTATAAGCCAACAAAATGCCATTGCTGCAGCCGCAGCAGCAGCTGCTGCCTGCAATAATGATCCCAATAAATTTCAGGAATTGTTAATGGAAAGAACCAAAGCTTTAGCAGCTGAAGCTTTAAAAAATACAGAAgAAACATGTTTAAATAACAACGAGCCACAAAGTTTAGCAACAAATGTTGCTGTTGAAACGCAAGATGTTGAGGAACATGTTGAAGCCTCAAAAGTGCCAAAAATAGAAATTTTAGATGATGATGAAGCCGAAAATGAAAACGACATAGACAATGAaacagaaaaatcagaaaaacgcTTAGATTCTTTAGAAGATTCTAATAAAGTCGATTTAACAAATACCATAGATTTGGATGGTTTATCCAACTCGGAAAAACCTTGTGAAACTGAAGAAAACTCTACATTTAAACATAGTGTTGAACGTTTTGGTACTTTATTAGGTGAAGAATTAGTTAATTCGTATTGGAGAAGGGGTTTTGATCAAACAAAATCTTTATATCCTAATAATCTTCATCATCACCATAGTCAGCAACATCAACACCACCACCACCAGAACCATCAtcatcagcaacaacaacagcaacaaatgATGATGCAACAAGCCGTCCATCAACATCAGCCAGTACAACATCATCAACAACATTTACCACAACCACCCTGTGGTCCTTCGTCGACAACTTTGCTTAGTCAATTAGTTAATTCTACTTTTTCTACTCCCAACTCAACCAACTCACAATCTCAAAATTCTTTACGTTCAACAGATGCTTTTCCACATGTCCAACcacaccatcatcatcatcaacaccACCACCACCAATTGCCTCCTCATTTAGCCGATCATCAGGATAAGTCTGCCATGAATCATCATGATTCTTCGGCTTCCAGTGCCAGTACTCCAAACTTGCAAGATCCACGAAATGCGGAAGATCATCATAGCATGTCCTTAAATGGTTCTTTAAAGAATTTGGAAGATAACAATAATAGTCTATGTGCTACACCTACTAGTCATATGGGCCCCGGGCATCCACATCACATGCATCATGGCTTTTTGCCAGGTCTACCATTCCAATTTCAAGAACGTGGTCATTTCAGATTTGCTGATGATTTACAATTGCCTCCAGGCACTTCCATGGCAGGACGTTTAGGTGAATCTTTAATACCTAAAGGTGATCCTATGGAAGCTAAATTACAGGAGATGTTAAGATATAATATGGATAAATATGCCAATCAAGCCTTGGATACTTTGCATATATCAAGACGTGTTAGAGAACTATTGTCAGTTCATAATATTGGCCAGCGTATATTTGCCAAATACATATTGGGCTTATCACAAGGCACTGTTTCTGAGTTGCTGTCAAAGCCTAAGCCCTGGGATAAGTTAACAGAAAAAGGACGTGACAGTTACCGCAAAATGCATGCCTGGTCATGTGATGATAACGCAGTTATGCTACTCAAATCGTTGATACCCAAaaaagATTCTGGTTTACCTCCATATGGTGGCGGTCGTGATGATTCAATGTCTGATGATCGTATTGCTCATATTTTAAATGAGGCTTCATCATTAATGAAAACTACAATACCATCGGGTATGCATCCACATCAGGAGCATCAACGTAGAGCTTCTACCATTCCCGAAGATTCACGTAGTAATGATGATTCAAAGTCACCCCACCAACCCTGTGCTTCACCTTTCTTAAGGGAACATCACAGCAAGTCTCAGGGTGAAACTCCAATGCCCGGACAAACACATTTACGTCCAGAAGATATGAATCCTGAAAAAATGGCACGTTTATATCAAGAACTTATGGCTAGAGCTCCTAGAGAAGCGTTTCCAGGTTTTCTGCTTTCTCCTTTTTTCAGTGGTGGTTTACCTCCAGCTGGCATGGGAGCTAATGCTTTCCCTGCCTTGGCAGCGGATGACAATATGCGTTTAGCTTTTGAAAGGGAAATGTCAAAattacaacagcaacaacaacaacaacacgctGCTCAACCTCCAAATTTTGCCAATTTCTCAAGTCTAATGGCTTTGCAACAGCAAATGTTAAATGGCGCTCAGGATTTGTCTTTGGGTACTGAGGAAAAATCTAAGGATGGTAAAGTTAATGGTCAACGAAACTCGTTTGAAGGATCACAAAATTCTCTTAGTAATCATGGTCAGACTACTCCAAACGCCAAAGATTCCGCATCCTCTGATGTTGATAGATTATATCCTGGTATGGTTAAATCTGAACAAGGAAATAAGACTCCTGCTCCTTTGCCCTCCAGCAATGCTTCTACCACCAATACCAATTCGGCAGCTCCCAGTCCTCTCAGTAATTCCATACTCCCGCCTGCTATGACTTCAAATGAAGAGTTCTCGGCTACCGCCAGCCCTCTTCAGAGAATGGCCTCCATTACTAATTCTCTTATTACACAACCTCCTTTACCACCTCATCATAATCCCCCTCAAAGACCTAACAAGGCTGTCTTACCACCCATTACCCAGCAACAATTTGATATGTTCAACAATCTCAATACTGAAGATATAGTTAGACGTGTCAAAGAAGCTTTATCGCAATATTCCATATCTCAGCGTCTGTTCGGCGAGTCAGTATTGGGTTTATCACAAGGTTCAGTATCTGATCTTTTGGCCAGACCCAAACCCTGGCATATGCTAACACAGAAGGGCAGAGAACCCTTTAtacgtatgaaaatttttttggaagaTGAAAATGCCGTTCACAAGCTGGTGGCTTCACAATATAAAATAGCCCCCGAGAAGCTAATGAGAACTGGCAATTATAGTGGTTCTCCTCAGATTCCCCAGGGTTTGGCTAACAAAATGCAAGCCTCTTTACCCATGCAAAAAATGATGAGTGAGTTGAAGTTGCAAGAACCAGCACATATCATGCAACAAATGCAAGCGGCAGCTGTAATGTCCGCCGCCATGCAACAGCACCAGCAGCATCAACAGCAACAAGCAGCAGCAGCTGCACAACAAAGTCAACAACAAGCTGCCCAGGCTGCCGTACAAGCAGCTCAGGCTGCTGCCGCTGCTCAAGCTGCCCAACAACATCACCAGTCAATGCTGTTGACTTCTCCCGGCCTACCACCACAACATGCTATTGCATTGCCGTCGGCCAATTCACAACCTTCATCGGGTAATACAACTCCTGCTGGTCCGACGCCCGATAAGAAACCTATGATGATGCCTATACACTCACCCCACCAAGCTAATGCCATGCGTAATATGCATCAACACATGTCACCCACCGTTTATGAAATGGCTGCTTTGACGCAAGATTTGGATACTCAAGTTATAACCACCAAAATCAAGGAGGCTCTCTTGACCAACAACATTGGTCAAAAAATATTCGGAGAAGCTGTTTTGGGACTATCGCAAGGATCGGTCTCGGAATTGCTTAGCAAGCCAAAACCATGGCATATGTTATCTATTAAGGGTAGAGAACCCTTTATACGAATGCAGTTGTGGTTGTCGGATGCCAACAATGTGGAACGCTTGCAGGCTTTGAAAAATGAGCGAAGGGAAGCTTCCAAACGTAGACGTTCTACCGGGCCTAATCAACAAGATAACAGCTCAGACACTTCCAGTAATGATACCAATGATTTCTATACCAGCAGTCCTGGACCGGGCTCTGTAGGAAGTTCTGGGGCTCCTCCCAACAAGAAGCAGAGGGTGTTGTTCTCTGAAGAACAAAAAGAAGCTTTAAGATTAGCTTTCGCTCTGGATCCATATCCTAATGTGGGTACTATAGAGTTCTTGGCCAATGAATTGGGTCTGGCAACTCGCACGATTACGAATTGGTTCCACAATCATCGTATGCGTTTAAAACAACAAGTGCCTCATGGTCCTCCTGGTCAAGAAACGAATATACCCACACGAGAAAATACCAACTCAACACCCTTTGATCCCGTCCAATTCCGTATATTATTGCAGCAAAGATTATTGGAGTTGCACAAGGAACGTATGGGTCTAGGAGGTAATACACCCTTGCCCTATCCACCATACTTTGCAGCCGCTGCACTATTAGGTCGCAGTTTAGCTGGTATGCCCGGAACCAATGCACAGTCTTTGCCTACCAATGAGGCGGAACTAAGAGCTCTCAATCAAGCTTTTAGAGAACAAATGTCTGGCTTAGATCTGTCAATGAGTTCATTGAAACGTGAGAGAACCGATGAATTTGAAGATGAAATAGATGACGGTCATTTAAGTGAAAACGAAAACGATTCTATAGATGACGACGATAAAACCAGCGAATACAGAAATTCGGTTTTCAACAGCATGAATGCccaacaatttttaaataatatgcGTTCAAATAGACGAAAACCTGCCGCACCACAATGGGTTAATCCCATCGGTCCATCGTCCACAGATACCGAACGCATAATCAATGGTGTTTGTGTAATGCAGGGAAACAATGAAGAACCACAACAACAAAACCAAAATGAGGACGATATACAAAAATCTTTAGACACTGAGGAAGATATGGATACACCCCATCATTCAGTAATGGAACCGGAGGTGGTAATCAAACAAGAAAAAGAAGACTGCGAAAGTGATACAGAAAAAGCACAAAACGAACCGGGTAACTGTGGTAGTGAAGGTTTAACAGATGCCGGTATCAAGGTGGTACAAGAAGATAAATTAAGAATGGTGCGCGTTCAAAGGTTAAGCAACGAAGAAGAAACAATAGCCAATTCAGCACCCGCAGCAACAGCGTGGAATTATTAA
Protein Sequence
MNALRKRHWHHHHHHQQQQQQQKQQQQQYRHNNQQQLHHVLCGRERATLAEKEVNTLKEQLSTNSPNAESDLDNNGELALATSTANNSIDSNNTEALNALSTEIPPNNKLLSASFNNNNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDSGNNGSSNDQQQQLNGCINPKLFFNHAQQVMMMEAAAAAAAAAAAAAAVQQQQSPMHSPQPATHQQQHQQQDAHEENNMPQKPTNTKEIKDNLALENATNPNSKLTASDTQTPDKRDINNTHNELEEEQQQQQHGNINAAATDSEHSNNNIINSFNSDSNKNSINSMVTNQNCTKTEIEKTKALQQVVADEDEHMDAEELRGKLLDNNNYNKETKNNHMEFVAAKDKEIKALFEEVKRLRSLEQTHLVQIHRLEEHLESKRQHIMRLEAKLDKQQVNEALLESQQQQQQQQEEKEKEELENSKENEKEIIEIEPDKEDEEEDEVQEVEKDRNCDLTQHIEDDQDNEEDDDEDFEDVQETHQMSVDRERNSSIKDSLNEIKKETQSPLSLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALAAEALKNTEETCLNNNEPQSLATNVAVETQDVEEHVEASKVPKIEILDDDEAENENDIDNETEKSEKRLDSLEDSNKVDLTNTIDLDGLSNSEKPCETEENSTFKHSVERFGTLLGEELVNSYWRRGFDQTKSLYPNNLHHHHSQQHQHHHHQNHHHQQQQQQQMMMQQAVHQHQPVQHHQQHLPQPPCGPSSTTLLSQLVNSTFSTPNSTNSQSQNSLRSTDAFPHVQPHHHHHQHHHHQLPPHLADHQDKSAMNHHDSSASSASTPNLQDPRNAEDHHSMSLNGSLKNLEDNNNSLCATPTSHMGPGHPHHMHHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGGGRDDSMSDDRIAHILNEASSLMKTTIPSGMHPHQEHQRRASTIPEDSRSNDDSKSPHQPCASPFLREHHSKSQGETPMPGQTHLRPEDMNPEKMARLYQELMARAPREAFPGFLLSPFFSGGLPPAGMGANAFPALAADDNMRLAFEREMSKLQQQQQQQHAAQPPNFANFSSLMALQQQMLNGAQDLSLGTEEKSKDGKVNGQRNSFEGSQNSLSNHGQTTPNAKDSASSDVDRLYPGMVKSEQGNKTPAPLPSSNASTTNTNSAAPSPLSNSILPPAMTSNEEFSATASPLQRMASITNSLITQPPLPPHHNPPQRPNKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKIFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLANKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQHQQQQAAAAAQQSQQQAAQAAVQAAQAAAAAQAAQQHHQSMLLTSPGLPPQHAIALPSANSQPSSGNTTPAGPTPDKKPMMMPIHSPHQANAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQALKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELHKERMGLGGNTPLPYPPYFAAAALLGRSLAGMPGTNAQSLPTNEAELRALNQAFREQMSGLDLSMSSLKRERTDEFEDEIDDGHLSENENDSIDDDDKTSEYRNSVFNSMNAQQFLNNMRSNRRKPAAPQWVNPIGPSSTDTERIINGVCVMQGNNEEPQQQNQNEDDIQKSLDTEEDMDTPHHSVMEPEVVIKQEKEDCESDTEKAQNEPGNCGSEGLTDAGIKVVQEDKLRMVRVQRLSNEEETIANSAPAATAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01109239;
90% Identity
iTF_01165425;
80% Identity
iTF_01165425;