Phum008736.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- stc
- Assembly
- GCA_000006295.1
- Location
- NW:214882-219815[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 1.1e+04 -4.1 1.6 15 19 343 347 342 347 0.81 2 15 0.34 1.9e+03 -1.7 3.0 4 10 376 382 374 383 0.91 3 15 8.8e-05 0.47 9.8 18.3 4 19 392 407 390 407 0.93 4 15 0.74 4e+03 -2.7 2.4 5 10 432 437 432 437 0.96 5 15 1.4e-06 0.0078 15.5 9.1 3 19 445 461 443 461 0.91 6 15 2.1e-08 0.00011 21.4 12.4 1 18 501 518 501 519 0.97 7 15 3.1e-08 0.00017 20.8 11.0 1 19 563 585 563 585 0.90 8 15 0.0009 4.9 6.6 9.4 1 11 625 635 625 636 0.95 9 15 0.073 4e+02 0.5 1.4 4 10 640 646 639 646 0.92 10 15 2.4e-09 1.3e-05 24.4 15.5 1 18 652 669 652 670 0.97 11 15 1.5 8.2e+03 -3.7 1.1 6 10 699 703 698 704 0.67 12 15 2 1.1e+04 -7.3 11.9 9 19 716 727 709 727 0.75 13 15 0.00039 2.1 7.7 14.9 3 16 765 778 753 785 0.79 14 15 3.6e-05 0.2 11.0 11.4 1 16 795 809 795 815 0.92 15 15 0.64 3.5e+03 -2.5 0.2 8 12 831 835 830 835 0.81
Sequence Information
- Coding Sequence
- ATGGATGGAGATTTGAATGAAATTCAAAGAATCTCGGCCAATTCTAACCTCGTGGCAACAGCTGAAGAGTTTGTTCCAAAATCTTTGTCAAATTTACGAGAACCCAGTAATGTATTGCAAAATATTGGGCAAAACTCTTTTGAATCCAATTCTTGCAATGCaaacgtttttcaatttttgaatTCTTTTCGAAATCATCATGAAACAGAAAATACCAAACAATATCATTCTGTATTGAGTGAACCTCAATCTTCACATCATTTAATGGTTGGAGAACATAGTGTCCCCAGTGGTAATATTCATAAACCAAtgtcaaggaaaaaaaatttattttttcctgatAGAAAAGATACTAATTACATTAAGTATAATCAATACAGACAAAATAGTAAATGGAAGAATGGAAATCATGGGAATCAACCTAACAGTAATAATGTCTTTGATGCTGATAAGGTAAAGTTTCATTATTCTCAAAAttttgtggaaaaaaataaaccaaatGATATACCAAAATCTGTCAATCAATATTTTGCGACTGAAGaagaaacaattaaaaataaaaattggtaTGCTCAACCTGGATATCAGGGAACtagttttacaaataataaaaggccATCTTGGAGAAATCAAGATAATTTAGCCAAGTTTAAACTAAAATCAAAAACTAAGGATGACCAAGAAGATAGGcccaatcaattttatttatcaaaaactGATAATCATAATCAAACAAAGGCTAAAATTATagaaagtaacaaaaaaagtttagaatTAAATcagaataaatatataaaatttaaaaaaactaaagaaaaaaaaactggtcaTCAGTTTAATCAAAAAACTAGTCAAAGAGAACAATTAATGAATTCATTAAGTAAAGGAGTATTAGAATGTTTGGTTTGTTGTGAAACCATCGGTCAAAATATGTCAATATGGAGTTGCAACAACTGTTATCATGTATTGCATTTAAAATGTGTTATAAAATGGGCAAAATCCtctaaaaatgattttggtTGGAGATGTCCAGCTTGTCAAAATTTAAGCAAAGATATTCCTGATGTATATTATTGTTTCTGCGGCAAAACAAGAAACCCAGAGTGGAATCATCAAGATTGTCCTCATTCTTGTGGAGAAGTTTGTGGTAAAGCACTGAGAAAATCATGTCCACATAAATGCACTTTGCTTTGTCATCCAGGACCCTGTCCCCATTGCACTTCCACTGTATCAAAAACTTGTGGATGTGGCAAGACTAAGAAAATAGTGCAATGCAATGGTTCTGATACCGTAACATGTGAGGAAAAGTGTGAAAAAGAATTAAACTGTTTGATTCATACTTGTAccaaaaaatgtcatttagGAGAATGCTTAGAGTGCACTGAAGTTATTCATCAAGaTTGCTACTGTCAGAAGTCACATAGAGATGTCAAGTGTTCAATCGAGTTCCTTGgaattgaaaacttttcttgTGGAAACACCTGTGATAAGAAGCTAAATTGTGGGAATCACTCATGCAAGGACATATGTCATGAAGgAAATTGTACAAAATGTGAATTAATGCCTGAggttgtaaaattttgttcATGTGGAAAAACTGAATTGAATTTATTGCAAACTACAGTAAGAAGTTCATGCACTGATCCCATACCTACATGTGATTTAATATGTGGAAAAAATCTTAATTGTGGCCCTGCAGatgaaaatcatacatgcaaaaaaaagtgtcatgAAGGTCTGTGTCCGGTTTGCTCATTAGAAAGCATTGTTAAATGCCGATGCggccacttaaaaaaaatgatacctTGCAGTAAACTAAACACTCTACCCAATGGTGTTTTGTGTGACAAACGCTGCGCAAAAAAAAGAAGTTGTGGAAAGCACAAGTGCAACCAAATTTGTTGTACGGATACTGAACATAAATGCAATTTGCCTTGTAACCGGTTTCTTCAGTGTGGTATTCACCGTTGCGAGGAAACCTGTCATAAAGGGCATTGCAAGCCCTGCCTAATAGCAAGCTTTGATGAGTTTACTTGTGAATGTGGTgcggaaattatttttccacctGTTCCTTGCGGTACGCGAAGACCTCAGTGCGATAAACCATGTTCTAGAGTTCACCCTTGTGGTCATCCTCCGGTTCATAGTTGCCATAGTGCTGATCAATGTCCTCCTTGTACTGTGCTCACCAAAAAGTACTGTCACGGACGTCACGAGtTGCGAAAAGCTGTGCCGTGTCATCAGGATTCTTTTTCTTGTGGATTGCCCTGCGGAAAAGAACTGCCTTGCAAAAAACATAAGTGCATTTTACCATGTCATTCAGGCCCTTGCCTTAAACAAGGTCAATCTTGCACACAAGCTTGCACTTTACCGAGGTCTCTCTGCGGGCACAATTGTGGCATACCGTGCCATGAAGGGCCATGCTCATCTGATGTTATGTGTAAAGAAGAGgttaaAGTAACTTGTGAATGTGGTCATAGGGTAACAACTAAAATTTgccatgaaaattttaaggaatctttaaaaattttggcggcaaaatcaggaaaaaaaatagatactCACGACCTCGATACTAACGACTTTACCGAACTTaactcaaataaaaaattgctgTATAATAATTTAGAGTGTAATGACGAATGTAAGTTGATTGAAAGAAATCGTAGGTTAGCATTAGctcttcaaataaaaaatcctgATTTAAGTGCTAAATTAACGCCTCGTTATTCAGAGTATTTGAAAACTTGGGCCAAGCGAGATCCCAGGTTTTGTCAAATGATTCATGAAAAACTTACGGATCTAGTGCAGCTAGCAAAGCAATCAAAGCAAAAATCACGAAGTTATTCTTTTGATTCTATGAACCGAGAAAAAAGGCATTTTATTCATGAATATTGTGAACACTTTGGATGTGAATCCATGGCCTACGATAAAGAGCCGAAAAGAAATGTTGTGGCTACCGCACTGAAAGACAAATCTTGGCTTCCCAGCGTATCCATTACAGAATTCGTTCGAAAGGAAAATAGTCCACGTAAAGTTCCAATGCCTGTCATCACAAAATCTTCAATTTCTGGAGAAGGATCTTCTTTGATTGTATCAAGCGAACCTCAGGTTGATTATTTCGATTGGAGACCTCAGAAGTAA
- Protein Sequence
- MDGDLNEIQRISANSNLVATAEEFVPKSLSNLREPSNVLQNIGQNSFESNSCNANVFQFLNSFRNHHETENTKQYHSVLSEPQSSHHLMVGEHSVPSGNIHKPMSRKKNLFFPDRKDTNYIKYNQYRQNSKWKNGNHGNQPNSNNVFDADKVKFHYSQNFVEKNKPNDIPKSVNQYFATEEETIKNKNWYAQPGYQGTSFTNNKRPSWRNQDNLAKFKLKSKTKDDQEDRPNQFYLSKTDNHNQTKAKIIESNKKSLELNQNKYIKFKKTKEKKTGHQFNQKTSQREQLMNSLSKGVLECLVCCETIGQNMSIWSCNNCYHVLHLKCVIKWAKSSKNDFGWRCPACQNLSKDIPDVYYCFCGKTRNPEWNHQDCPHSCGEVCGKALRKSCPHKCTLLCHPGPCPHCTSTVSKTCGCGKTKKIVQCNGSDTVTCEEKCEKELNCLIHTCTKKCHLGECLECTEVIHQDCYCQKSHRDVKCSIEFLGIENFSCGNTCDKKLNCGNHSCKDICHEGNCTKCELMPEVVKFCSCGKTELNLLQTTVRSSCTDPIPTCDLICGKNLNCGPADENHTCKKKCHEGLCPVCSLESIVKCRCGHLKKMIPCSKLNTLPNGVLCDKRCAKKRSCGKHKCNQICCTDTEHKCNLPCNRFLQCGIHRCEETCHKGHCKPCLIASFDEFTCECGAEIIFPPVPCGTRRPQCDKPCSRVHPCGHPPVHSCHSADQCPPCTVLTKKYCHGRHELRKAVPCHQDSFSCGLPCGKELPCKKHKCILPCHSGPCLKQGQSCTQACTLPRSLCGHNCGIPCHEGPCSSDVMCKEEVKVTCECGHRVTTKICHENFKESLKILAAKSGKKIDTHDLDTNDFTELNSNKKLLYNNLECNDECKLIERNRRLALALQIKNPDLSAKLTPRYSEYLKTWAKRDPRFCQMIHEKLTDLVQLAKQSKQKSRSYSFDSMNREKRHFIHEYCEHFGCESMAYDKEPKRNVVATALKDKSWLPSVSITEFVRKENSPRKVPMPVITKSSISGEGSSLIVSSEPQVDYFDWRPQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -