Phum001697.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- nfxl1
- Assembly
- GCA_000006295.1
- Location
- NW:1171952-1175410[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.1 5.9e+03 -3.3 1.1 15 19 160 164 159 164 0.81 2 21 0.15 8e+02 -0.5 0.8 4 10 195 201 194 201 0.95 3 21 8.4e-08 0.00045 19.5 16.7 1 19 209 226 209 226 0.99 4 21 0.65 3.5e+03 -2.6 1.4 7 13 230 236 230 237 0.78 5 21 4e-08 0.00021 20.5 13.1 3 18 264 279 262 280 0.91 6 21 0.7 3.8e+03 -2.7 1.9 6 10 305 309 304 309 0.90 7 21 5e-05 0.27 10.6 16.4 1 19 315 333 315 333 0.98 8 21 0.64 3.4e+03 -2.5 1.7 5 10 357 362 357 362 0.95 9 21 1.5e-06 0.0079 15.5 11.9 1 18 368 385 368 386 0.97 10 21 0.27 1.4e+03 -1.3 0.5 1 10 395 404 395 404 0.73 11 21 2 1.1e+04 -5.0 2.3 5 10 409 414 409 414 0.91 12 21 0.0096 52 3.3 10.3 3 18 422 437 420 438 0.92 13 21 1.7e-09 9e-06 24.9 12.5 1 19 447 465 447 465 0.99 14 21 1.8 9.8e+03 -4.0 1.7 5 10 493 498 493 498 0.92 15 21 0.0013 6.9 6.1 8.1 9 19 513 523 511 523 0.90 16 21 0.05 2.7e+02 1.0 4.5 4 12 535 543 533 543 0.88 17 21 2 1.1e+04 -4.9 4.2 14 18 572 576 568 577 0.69 18 21 3.7e-05 0.2 11.0 6.8 1 11 613 623 607 627 0.91 19 21 2.9e-07 0.0016 17.7 18.9 1 19 653 670 653 670 0.93 20 21 1.7 9.2e+03 -3.9 1.6 8 13 675 680 674 680 0.74 21 21 2.4e-06 0.013 14.8 11.9 1 18 715 734 715 735 0.90
Sequence Information
- Coding Sequence
- ATGAATGGGGATAAAAATGTTTGGAATAAAAGTCAAAATccgtggaaaaataaaaattccgtagctaataataaaaatacagctgagataaaatttaaaaatgcacAAGAAAAACTTCAAGCATCTGTGAACAAACATCTGGAACAACAAGAATATGAGTCTTCTTCAGATGAAGAACCTCTTGAATCCGAATCAATTTTATCttctgtttttaaaaattatgatcAATTCAATGATAAACATGAAGGAGTTGAAAGGACACaacaatttttagaaaatgctTTTCAATCAGGTGCTGGAATATGCTTGATTTGTATCGGTAGCATTAAGAGAGCTGATactATTTGGAATTGTTTAGAATGTTATAGttgttttcatttgatttgCATTGTTAAATGGGCAAACGATAGCATACATCAGCAAAAACTCACACAGGAAGATTTGCCAGCTTTTCGTAAAACTCAAATTTTATGGGcttgTCCCAAATGCAGGCATGATTATAAACCTGAAAGTGTTCCTCAAAAAAGTTATTGCTTCTGCGGTAAAGTTGAAGATCCAGAATTTCATCCTTGGCTTATTCCTCATTCGTGTGGAGAAACTtgtggtaaaaaattaaaacctgaATGTGGTCATTCCTGTCTTTTACTTTGTCATCCAGGTCCTTGTCCGCCATGTCCAAAGACTGTACAGGCGAAATGTCACTGTGGTAAAAAAGGTCCTAAGCATTCCAGGTGTAGTAATAAACTTTGGTCTTGCAATTCTAAATGCAGTAAACCACTTTTATGCAAAAAGCACAACTGTGATCAAATATGTCACTCTGGAGACTGTCCTCCATGCAACAGAGAAAGCTCTCAAAAATGTCAATGCGGTTTACAGGAAAGAAAGCAACCTTGCCTGACTCCCAATTGGCAATGCGAGAAGGTGTGCGGAAAACCTTTATCCTGCGGTTTTCATAAGTGTTTGATTCGGTGTCATTCCGGTCCTTGCGGTTGTTGTCCTTCATCTTTAGAAAGAACGTGTCCTTGTGGGAAAACAAATCATTTGCTACCCTGCACCGTTGACGTACCCACATGTAACGAAACGTGTGACAAGATATTAGATTGCGGCATTCACAAATGCCCTCAAAAATGTCACAAAGACAAATGTGGAATGtgtttggtcatagaaaaaaaacaatgcagATGCGGTTTGCACAAAAAAGAACTTCCGTGTCAAAAAAGTTTCACTTGCGAAACGAAAtgcaaaagaataaaaaattgtttaaaacatgCTTGCAACAGAAAGtgTTGCGACATGAATTGTTTGCCGTGTGAAAAGCCGTGTGGGAAAACCTTGAAATGCGGTTATCATAAATGTCCATTGGTTTGTCACAAGGGTCAATGTTATCCTTGCCCCGAAGTTGCACATGTTAAATGTAGATGTGGAAAAACATCGATAACAGTTCCCTGCggtcgtcaaaaaaaaacatgtccgcccaaatgcaataaaaaatgctcaattcctCCGACTTGTCATCATCCGTCACGGGAACCCCACAGTTGTCACTTCGGAGAATGTCCACCCTGTAAACAAATATGTAACAAAACGAGGAGTAATTGCGATCATTTATGTCCCGCTCCTTGTCATTCTGCCGTTTGGGTGAAAATCGAAGACAACCATCGTCCGGCAGGTCCTTGGGAAATATCCGAgccaaagcaaaaaaaatgcaaattgcCGTGTCCAGATTGTCAAGCTCCAGTTTCCGTGACGTGTTTAGGCGGTCACGAAACTTGCGATTGGCCCTGTTACAAAGCCAAACCATCTTCTTGTCATCGACCGTGCGGACGTTTACTCAAGTGTACAAATCACACTTGCCAAAAGCCGTGTCACGTCGTAAGCGGAGCGGGAGATTCATTTTTCGCCGACGAAAGCTGTTTGGAATGCGAATCCGAATGTTTAAAAGTTAGACCTCCCGGATGTAGTCACAAATGTCCCAAACCGTGTCATTCGGGACCGTGTCCTCCGTGTACTCAAAACATTAAATCCAAATGTCACTGCGGAGTTTTAATGCTCATCAATAAATGTTCAGAATTGAATTCCGTTCAGGATGATGTTAAGGACAAGCTATTGAGCTGCGGGAACAAATGTCCGAAAAACTATCCCTGCGGTCACAAATGCAAATCAGATTGTCACGTGGGTGATTGTCCCGATCCTGATTCCTGTcgtaaaaaagtcaaaaaatcaTGTAAATgtggaaaagttaaaaaggaaatcacGTGCGACATGGCGAGAGCctgtaaaaaagaatttttagatTGCGACGAAACGTGTTTGATAAAAAGCATTCAAGAGAAAAGGgaaaaagaactCGAAacggaaaagagaaaattagaagaagaaaagaggtCGTTGAACGAGTATGAAaagtttcaaaataaattcagaacgggaagaaaaggaaaacagaaaaagaaaatggtggaGGAAGAAAAACCGTCCTTTGCGTCCAAATATTGGATATTCATATTGAGTGCTTTCTTCGGAACGATagtaacaattatttatttgatgcaGTGA
- Protein Sequence
- MNGDKNVWNKSQNPWKNKNSVANNKNTAEIKFKNAQEKLQASVNKHLEQQEYESSSDEEPLESESILSSVFKNYDQFNDKHEGVERTQQFLENAFQSGAGICLICIGSIKRADTIWNCLECYSCFHLICIVKWANDSIHQQKLTQEDLPAFRKTQILWACPKCRHDYKPESVPQKSYCFCGKVEDPEFHPWLIPHSCGETCGKKLKPECGHSCLLLCHPGPCPPCPKTVQAKCHCGKKGPKHSRCSNKLWSCNSKCSKPLLCKKHNCDQICHSGDCPPCNRESSQKCQCGLQERKQPCLTPNWQCEKVCGKPLSCGFHKCLIRCHSGPCGCCPSSLERTCPCGKTNHLLPCTVDVPTCNETCDKILDCGIHKCPQKCHKDKCGMCLVIEKKQCRCGLHKKELPCQKSFTCETKCKRIKNCLKHACNRKCCDMNCLPCEKPCGKTLKCGYHKCPLVCHKGQCYPCPEVAHVKCRCGKTSITVPCGRQKKTCPPKCNKKCSIPPTCHHPSREPHSCHFGECPPCKQICNKTRSNCDHLCPAPCHSAVWVKIEDNHRPAGPWEISEPKQKKCKLPCPDCQAPVSVTCLGGHETCDWPCYKAKPSSCHRPCGRLLKCTNHTCQKPCHVVSGAGDSFFADESCLECESECLKVRPPGCSHKCPKPCHSGPCPPCTQNIKSKCHCGVLMLINKCSELNSVQDDVKDKLLSCGNKCPKNYPCGHKCKSDCHVGDCPDPDSCRKKVKKSCKCGKVKKEITCDMARACKKEFLDCDETCLIKSIQEKREKELETEKRKLEEEKRSLNEYEKFQNKFRTGRKGKQKKKMVEEEKPSFASKYWIFILSAFFGTIVTIIYLMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -