Phum008705.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:57819-61085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0033 0.22 11.3 0.5 1 21 110 130 110 131 0.94 2 16 0.00049 0.033 14.0 0.6 1 23 139 161 139 161 0.96 3 16 0.002 0.14 12.0 5.0 1 23 289 312 289 312 0.95 4 16 0.0017 0.11 12.3 2.1 2 23 347 368 346 368 0.95 5 16 0.92 61 3.7 3.2 1 21 443 463 443 464 0.94 6 16 0.05 3.4 7.6 1.2 2 23 624 646 623 646 0.94 7 16 0.00053 0.036 13.8 1.5 1 23 652 674 652 674 0.98 8 16 0.044 2.9 7.8 3.0 1 20 681 700 681 702 0.93 9 16 0.038 2.5 8.0 2.8 2 21 725 744 725 745 0.94 10 16 0.22 15 5.6 1.0 1 23 819 842 819 842 0.87 11 16 2.1 1.4e+02 2.5 0.7 3 23 850 868 848 868 0.84 12 16 0.015 1 9.3 0.7 1 23 874 896 874 896 0.88 13 16 0.12 8.1 6.4 0.7 1 19 901 919 901 921 0.93 14 16 9.5e-06 0.00064 19.3 0.3 2 23 935 956 934 956 0.96 15 16 0.022 1.5 8.7 0.3 3 23 970 990 968 990 0.96 16 16 0.0017 0.11 12.3 5.1 1 23 996 1018 996 1018 0.97
Sequence Information
- Coding Sequence
- atggaagaggaaaattatattaaaaaatatagcCAAAGATTTAATAAATGCAAAGAAAGAATTAATGAAAGTCATAATGCAAgtgaaataattgaaaataatatttgctTTAAAAAGGAATTATGTGGTAAcataaaatttgatattttcgaAAGAGCAAATTGCAAAAAACGTTTGTCATCAGATAAAATATTAGATAAATTAATACAACAATGTAAAAACATGGCTGTTAAAAATGAACTATATGAATTTCATTCTAAATGCATCGAATTTacaaatgatgaaaataaaattgacaaTAATTTCTCATTTCGATCTCAAGATTTTTTTGCTTGCTCAAAAtgtaatcaaaaattttacgaaaaggCTAAACTAGAATCTCACATTTTATATGACTGTGAAACCAATCAAAAATATACTTGtgacatttgtaaaaaaaattttagttattttGGCATACTTAAAAGACATATAATTGCTCACATGAAAGTGtcagatgaaaataaaaaaaactgtgcTCAAGAAATCTGTGAATCTGATTCACTGAATcctacttttaatttttctcctgCAACTTGTGATAAACACAATGAACCTTTAATTCAGGTTACTGGAACAAAAGATTATCAGTATAATAAAGATGTCAAACTGAGTAAATCATTGGATTcacaatcaaaacaaaacaataactcgggaaaaattgttttaagtgactcggaattaattttatcaaaatttaaaaagtctgGTAGAGTCTTATCAAattgtgaaataaaaattcaaactaaAAGCCTTAATTTTTCACTTcaatcttctgcttttaatttaaataaattcaaatggaatcgtaaaatatttcaattgtaTAAATGTTACAAatgtaaatgtaaatttaataacaaaatttcattaaaaaaccaTTTAGAAAATGCACATTCTAATGTAAcatcaaataaaacaaaaaataacaacaataacactCTTAACAACTtagataatgattattttttaaaagattgtaATTTGGAGGACAGAATGACTTGTAAGGTTTGTCAAAGGGCATTTACAAAAGAATATTATATGAAAAAGCATAGATATTTGCATGAAAATTCCCTTGTTAAGTatgaaaatttattactctctcATTTTACTATTTCGCATCCTGCAGAACTACCATATAAATGTTTTTGCTGCAAATCCCAATTCCCCAGTTTTCAAAATCTCAAAGATCACATAAATCACGATAACTTGAATAAATGTACTACTTTTCTTTCTCGTGCCAAACTTTTTCGCAAACCCAGGGTGAAACGTAAATCACAATcagaatttaaatgtaaattttgctatgttaaatattttaacaaaaccaAATATAGATTGCATGTAAAAGTTTGCCAAAAAAatccaaaggaaaattttaatttaactcaaaacgatattaaaaaaaaaattaataaatcaaagaaTAGTCGACAGCTTAATTgggaaagtaaaattattgtaaaacgTTTGAGAGGAAAATctaatttagaaaataatgAGGAAGATTCggaaaataatgagaaaaaaaaatcgtttaatgtatcttcattattttttgacgacacggatgaaaatttaacgaacaGAAAAGGATggtttgataattattataagaCTAATGAGGATGACATAACTTTTGGTTCGGAAGAAACgagtggaaaaaatttaaacactaAACAGTCCTTAAGGGaggtatcgaaaaaaaataaacgagcagggtcggaaaaagtaaaagatatAATGTTTTGTGAGTCGGAAACATCCGAAGAAAGTGAAAATGAAGAAacaacggaaacggaaacgacgccatttgaattcgattcgaaaaaatgtcgtttatgccaaataatttttgatcaAGAATACGAACTTTtacatcattttattaaaattcatccGGGTGAATCCGCTCATAAATGTCCCCATTGTGACGTTACGAGTCCTTTATATGCACAATTGAAAGAACACATGAAAATTCACGGAATCGGAATCGGAATTTTCAATTGTGAAAATTgttcgaaaaaattcaaaagcgaaaagaaaataaaaaatcattacttCCGGTGTAAAGGAAGGAGCGTcgtagattttaaaaatggcaaaacaaatttaaatgaatcttTTAAAGAACAATGCAAacgctgtaaaaaaaattattatacgaaATTCGGATATCGAAGgcataaaaaaatatgcaaaAACAGGAATAAAATGATGGAAAAGTTTGACGgtggtttaaatttattttccggtAACGATTTCGAACGGTTATCAAATGACAATGACTCCGTAAAAGTTATCAACGACGgaatattatttcaaaatatcgataatgaattaaaaaacaaaggagAGAATGACGGGAAATcgggaaatgggaaaaaaatgacgactGAACCTGggacaaataattttacatgtCGGTTgtgtaatgaaaaatttaaatacgaaaGAGGGATAGTCGTGCATTTCAAAGGAAATCATCCCGGTCATAAACCTCTCATATGTCACGTTTGCAACGTACCTTTGGCCGATAAACTGAAGGAACATTTGAAAACACACGGGATAGGCGAGGAATTCATATGCGAACTTTGCGGAAGAAAATTCAATcagaaatttttatcgaaaatacACGAGATGTGGCACGAGGGAATCGAATATAAATGCGATAAttgcaaacaaaaatttctcaaccgggaaaaaatggagaaacacgtgggagagaaaaaatgtaaaaatcgtGTGTCTCTCATGAAATTACCCTGCGTCGTTTGCGGAAAATCTTACAGGTCGCAATTCGGATTGAACAAACATTATTTGACTCACACGCCCAAAGATGAACGTccggtaaagaaaaaaatgaattgcgAATTTTGCGAAAGGTGGTTCGAAAACGTGAGCGGTTTGGAAAGGCACAAAAGGATTCACACgggagaaaaacctttttgctgtcgttactGTCCGAAAACTTTTGCTCAAAAAGGAAATTGTAAAGCACACGAAAGAATACACACGGGAGAAGTAAATattcgaaaaaggaaaaaaaaacatgagggAAATTCAAACAAGGGTGTaggataa
- Protein Sequence
- MEEENYIKKYSQRFNKCKERINESHNASEIIENNICFKKELCGNIKFDIFERANCKKRLSSDKILDKLIQQCKNMAVKNELYEFHSKCIEFTNDENKIDNNFSFRSQDFFACSKCNQKFYEKAKLESHILYDCETNQKYTCDICKKNFSYFGILKRHIIAHMKVSDENKKNCAQEICESDSLNPTFNFSPATCDKHNEPLIQVTGTKDYQYNKDVKLSKSLDSQSKQNNNSGKIVLSDSELILSKFKKSGRVLSNCEIKIQTKSLNFSLQSSAFNLNKFKWNRKIFQLYKCYKCKCKFNNKISLKNHLENAHSNVTSNKTKNNNNNTLNNLDNDYFLKDCNLEDRMTCKVCQRAFTKEYYMKKHRYLHENSLVKYENLLLSHFTISHPAELPYKCFCCKSQFPSFQNLKDHINHDNLNKCTTFLSRAKLFRKPRVKRKSQSEFKCKFCYVKYFNKTKYRLHVKVCQKNPKENFNLTQNDIKKKINKSKNSRQLNWESKIIVKRLRGKSNLENNEEDSENNEKKKSFNVSSLFFDDTDENLTNRKGWFDNYYKTNEDDITFGSEETSGKNLNTKQSLREVSKKNKRAGSEKVKDIMFCESETSEESENEETTETETTPFEFDSKKCRLCQIIFDQEYELLHHFIKIHPGESAHKCPHCDVTSPLYAQLKEHMKIHGIGIGIFNCENCSKKFKSEKKIKNHYFRCKGRSVVDFKNGKTNLNESFKEQCKRCKKNYYTKFGYRRHKKICKNRNKMMEKFDGGLNLFSGNDFERLSNDNDSVKVINDGILFQNIDNELKNKGENDGKSGNGKKMTTEPGTNNFTCRLCNEKFKYERGIVVHFKGNHPGHKPLICHVCNVPLADKLKEHLKTHGIGEEFICELCGRKFNQKFLSKIHEMWHEGIEYKCDNCKQKFLNREKMEKHVGEKKCKNRVSLMKLPCVVCGKSYRSQFGLNKHYLTHTPKDERPVKKKMNCEFCERWFENVSGLERHKRIHTGEKPFCCRYCPKTFAQKGNCKAHERIHTGEVNIRKRKKKHEGNSNKGVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -