Phum008231.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:80637-84235[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.34 23 5.0 1.5 1 23 407 429 407 429 0.85 2 18 0.0015 0.099 12.4 0.1 1 20 435 454 435 457 0.91 3 18 0.9 60 3.7 1.8 2 21 474 493 473 494 0.90 4 18 0.85 57 3.8 2.8 2 23 509 530 508 530 0.89 5 18 0.0041 0.28 11.1 1.8 3 23 538 559 536 559 0.93 6 18 0.034 2.3 8.2 7.7 1 23 565 587 565 587 0.98 7 18 3.1e-05 0.0021 17.7 0.9 1 23 592 614 592 614 0.98 8 18 0.008 0.53 10.2 2.4 2 23 628 650 627 650 0.93 9 18 0.0014 0.092 12.5 0.4 1 23 666 688 666 688 0.97 10 18 0.0026 0.17 11.7 0.3 1 23 698 721 698 721 0.97 11 18 0.0014 0.092 12.5 0.6 1 23 727 749 727 749 0.99 12 18 0.0068 0.46 10.4 0.7 1 23 764 786 764 786 0.98 13 18 0.00072 0.048 13.4 2.5 1 23 792 814 792 814 0.98 14 18 0.00045 0.03 14.1 0.2 1 23 820 842 820 842 0.95 15 18 0.0015 0.1 12.4 3.5 1 23 848 870 848 870 0.97 16 18 0.0001 0.007 16.1 1.6 1 23 876 898 876 898 0.96 17 18 0.00014 0.0091 15.7 3.2 1 23 904 926 904 926 0.97 18 18 6.7e-05 0.0045 16.7 0.8 3 23 934 955 933 955 0.94
Sequence Information
- Coding Sequence
- atggaagagaatagtaaaaattttgttatagtATTAAAAAGTGGAAATGGTGAATCAATCACTGTAGAAGTTTTACCCCAAGATACTGTTAAAGATCTTAAAGAAAGAATAGAAACTCAAACTGGAATCCCTTTAGATTTtgatcaaattaaaattgatggGAAAACATTTAATGATGACACAAACATTATTGAATATTTCTCTTCAGAAGGTGATGAATATGAAGAAAATCAAGGTAATGATAAagatgtaaaagaaaatttaatcgcTTTGGAAGAAATAAATATTCCATCTTATACAGAAGATGATACAATTTTAAAAGCTTCGACAAGTTTttgcgaaaacaaaaaaagtttattttgtgCTGCCATAGGATGTAAATCTAATAAGCTTGAAGACCCAAATGTACAATTATTCCAATTTCcagcccaaaaaaaaagTCACAATTGGGCATTATGCGGAAATCATTTTACTAAAGATCAGTTTCTGACAAAAGATAGAAGGATCTTAAAACAAAATGCTATTCCAACAATTTTTGATACATCTAAAGAAAATGAAGatgaaaaaatagaagaagaattaGAACCTTTACATCCGGGTGCATTTTGCAGATTGTGTGGTAATTTATTCGAAGGAACTGATTCAACTTTTATATTTAGTGAAGATGGGGAAAAGAATAGTTTAgcagaaaaaatcaattcctGTCTTCCAGTATCTGTACGTAAAACTGACCCCCTACCCAAacaaatttgtatttattgtttaaaaaacttagAAGCTGTTCATTTATTTGCTGAGACTTGCATAAAAGCAGAAATCAAATTGAAAGCATTGACCAAAAGATTTTTggttcatcagttaaagaaaaattcaaatgaaataaaGTCAGAAAAATCATTCTGCTGTCCCCTTTGTCGAGATGGAGCAATGAAATATCACGGAAAtcataaagaattaaaatctcaaaattttatttgtctaCAAAAACAACCCGAAGAAAATTCCATGGATATTCCAACGGGTTTTTTACCCGTTACCAAATTCGAACCAGAAGATTCTAGTCACGACTTCATTAACGATCTTTACAGTGATGACGATGAAGGTTCTTGCGATTTGGACAACAACGGcacggaagaaaaagaaaaaacgtattCCTCAACGGAAAAAAGTGACGTTTCCGTTTCCCTTTACTTGCAAGAGGACAGAGTGGAAATGCTTTACGAATGTCCTCTTtgcgaagaaaattttgcgAGTCCGTTTGAATGTTACGAACATTCTAAATACCACGTGTCACCGAATAATTATCCGTGTTTAGTTTGCGGATTAAGTTTTGTGACGgaggaaaaattgaaagaacATTTTGGCGGGCATAAAAATAAAGTGAGCAGCACGCGTAAAACGCCATACAAACCCATGTTGGAATGCGGAGCGTGTAAATTTCAATTCACGACTAGAAAAGATTTTATACTACATAAATGCAGCAAACCCATTCTTAGAATTCTTCAAAATAATTCTGTCAACTTGTACTGTCATTCTTGCGATcaacattttaaaacgttagAAAGAGCAGAGCTTCACAGAGCTTACCACGAAGGTATCGAAAAGTTGGCGTGCAAACACTGCGAGGAAAATTTCGAAACTCAAAAATCTCTAGACTatcatattaaatttcaacatGAAAATCAAGAGCCCTTCGTTTGTCAACATTGCGAATTTAGATTTTTTAGCAAAGAGCATTTTGACAAGCATAAAAAAGTTCACGAGTTGACGACGTACCAGTGCTCGTTAtgcaataaaacatttaaagatttggaaaaaataactAGTCATATAGAGAGTCACACCGTGAACAATTCGGAAAACGTGtcgaatttgaatttgaaatgTCCCAAATGCGAActtcaatttacaaaaaaagctCACTACCTGTatcatttagaaaattttcacgatggAGAAATGAACAATTTGAAGAGAATGCCTTCTCTCATACAGTATCAATGTAAAATTTGTTCAGAAAGATTTACTCTGTCCCAAGATGTCATAATTCATCGTACGGTTCATTGGAAAAGTTACGATTCGTGTCTTCCGCACGTTTGCGAATATTGCGGAGAAGCACATCCTAGTCCCAATGCATTGGCAAGACACAGAAGAATATTACATCCGGACGAACAACCTTACGTGTGTACGATATGCGAAGAAAAGACGAGAACCTTGTACGAAGCTCGGGTTCATAGGAAAACTCACACGGGTTACGTGAACACGCCACAAAAACCACCGTCGAAAATTTACATTTGCGACAATTGTCCGAGTTTGTTTTCCGACAAAGCTTCATTTCTCTCACATAAGAAATCACACAGAGTCACCAAAGGTTTCCAATGCGAATTCTGTCAAAAGGTTTTCCCGGAAAGGCATCGTTTGGTAGTGCACAGACGTCAGCACACGGGTGAAAAACCATTTTCCTGCGGAGTTTGCGGTAAAAAATTTGCTCAAACGTCGGCCATGTACACTCACGCGCTTTTGCACACGGGAGAGACACCACATTCCTGCGATTTGTGCGGAAGGAGATTCCGAATCAAATCGGACAGGGACAATCACCGAAGGACTCACACGGGAGAAAAACCCTACAAGTGCCCGTATTGCGATAAAAGTTTCAGAACGGGTCAGGTTTATTATCAGCACAGGATGATACACACGGGAGAGCGAAGATTTCCCTGCGACATTTGCGGGAGAGCCTTCAAAAGATCTCACACGCTCGTTTGTCACAGGAGAATACACACGGGAGAAAAGCCAAATATTTGCGACGTGTGCGGAAAAGGTTTTCGTCAGAGGACGGACATGAGAAAGCATAAAATGAACCTGCACGGCGTACCTGCTTAA
- Protein Sequence
- MEENSKNFVIVLKSGNGESITVEVLPQDTVKDLKERIETQTGIPLDFDQIKIDGKTFNDDTNIIEYFSSEGDEYEENQGNDKDVKENLIALEEINIPSYTEDDTILKASTSFCENKKSLFCAAIGCKSNKLEDPNVQLFQFPAQKKSHNWALCGNHFTKDQFLTKDRRILKQNAIPTIFDTSKENEDEKIEEELEPLHPGAFCRLCGNLFEGTDSTFIFSEDGEKNSLAEKINSCLPVSVRKTDPLPKQICIYCLKNLEAVHLFAETCIKAEIKLKALTKRFLVHQLKKNSNEIKSEKSFCCPLCRDGAMKYHGNHKELKSQNFICLQKQPEENSMDIPTGFLPVTKFEPEDSSHDFINDLYSDDDEGSCDLDNNGTEEKEKTYSSTEKSDVSVSLYLQEDRVEMLYECPLCEENFASPFECYEHSKYHVSPNNYPCLVCGLSFVTEEKLKEHFGGHKNKVSSTRKTPYKPMLECGACKFQFTTRKDFILHKCSKPILRILQNNSVNLYCHSCDQHFKTLERAELHRAYHEGIEKLACKHCEENFETQKSLDYHIKFQHENQEPFVCQHCEFRFFSKEHFDKHKKVHELTTYQCSLCNKTFKDLEKITSHIESHTVNNSENVSNLNLKCPKCELQFTKKAHYLYHLENFHDGEMNNLKRMPSLIQYQCKICSERFTLSQDVIIHRTVHWKSYDSCLPHVCEYCGEAHPSPNALARHRRILHPDEQPYVCTICEEKTRTLYEARVHRKTHTGYVNTPQKPPSKIYICDNCPSLFSDKASFLSHKKSHRVTKGFQCEFCQKVFPERHRLVVHRRQHTGEKPFSCGVCGKKFAQTSAMYTHALLHTGETPHSCDLCGRRFRIKSDRDNHRRTHTGEKPYKCPYCDKSFRTGQVYYQHRMIHTGERRFPCDICGRAFKRSHTLVCHRRIHTGEKPNICDVCGKGFRQRTDMRKHKMNLHGVPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -