Phum009700.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:198424-204261[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0069 0.46 10.4 2.8 2 20 190 208 190 211 0.95 2 12 0.00015 0.01 15.5 5.2 1 23 233 255 233 255 0.96 3 12 0.061 4.1 7.4 1.2 1 19 261 279 261 284 0.76 4 12 3.8e-05 0.0026 17.5 0.2 1 23 415 437 415 437 0.98 5 12 0.0005 0.033 13.9 0.1 1 23 443 465 443 465 0.95 6 12 3.3e-06 0.00022 20.8 1.1 1 20 471 490 471 493 0.93 7 12 3.7e-05 0.0025 17.5 2.1 1 23 499 521 499 521 0.97 8 12 0.00025 0.017 14.9 1.6 2 23 528 549 527 549 0.97 9 12 0.033 2.2 8.2 0.5 1 11 555 565 555 581 0.89 10 12 0.00058 0.039 13.7 1.3 2 23 588 609 587 609 0.97 11 12 6e-08 4e-06 26.3 0.3 1 23 615 637 615 637 0.98 12 12 0.014 0.96 9.4 0.3 3 23 655 676 653 676 0.93
Sequence Information
- Coding Sequence
- atgggagaattaattattgaaaaaaaaccatGTTGTTTAATTTGTGATACAGAAGTACAGATTAATCAGTCATATTCtatattttatacttttattacaaattcTGGGATTCTTTTAGCTAattcattggaaaaaaatttgtctctAAAAGATATAGgtaCATTATCTTTAAGAAGTAATTTACTTTGTTTAAAATGCTTTGAATATTTTGAACAACTAACTTATTGTGAGAGCAAACTAGTTGAATTAAAAGGAGATCTGTGGGCTGTTTTTAAGAAAACTTGTGAAAAACATGGAGAAAAAGCAGAAACTTTTATCAGAGGATTATCAACTCAAACAGATTATAGAGTGTATGAATGCAGTTGTAAAGAAAATCAAGGATATCTGCaaattaaattagaaaatatgGATAAaggagaagggaaaaagaatAGTTTAACTGATAATCATGGCTCTAATATTATTACTTCTGAGGAAGAAATAGAGAAATCAGAAGAAAAATTCAGTTTTGATGATGATCCTCATTTAACTGGTGAAGGTTCTGcaaaatggaataaaaaacCTGAATCATGCAAATTATGTGGAAAATGGTTCAAAAAGatGTCAGAGCTTAACCGTCACATGGTTTGTCACCTGGAGATAAACAGTGAAGATTCAGTTAAAGATTCATTATCTTctacagggaaaaaaaaattccacttcTGTagtatttgtaataaaaaatttaggagACCGTGTGAAGTGAAAGAACATATGATGTCTCATAATTGTACCAGtccttttatttgtaaatattgtGGTAAAAAACTTAAATCTAAGACTGGATCCGTATATCACGTATTAAAAACACATAAAATTGACGTAAATGATACGAAAAAATTGGacgaacatttttttataaattctaaTGAGTCAAAGAGCAAGAATGAAAATATTCATACGAAACCAAAGTCagaaaatataaaactaagggaagaggaaaaacaaTGCTCATCAGACTTTGAGCAATCCTACAGTTCTGAAGATGAACTTCCTTTAGCTGAACGAAGAAAGCAATTAATTcatgaaagaattaaaaaggagagTTCCAAAGTAATTGACAAACCTGATACGGATACAACAGAAAAAACTCAAGTGCCTGAGCGAACGAAGCATAAATCAAAAAAGTATCCtttgtcttttttaaaaattaaacgtgaaaaagaagaggaaataTTTTCAGTTACTATAAAAGaaccaaaatttaaatgtgatgTTTGTGGTAAAATGTGGAAAACAAAAGGAGAATTAAATGCTCATAAAATCACACATTCGGATGCTCGACCTTATATTTGTGAAATTTGTGGCCAGgccTACAAGCATAAACCTGCTTTAGATGTTCATGTTGGTATGCACAGAggtatttatcatcatcagtgTTCTTATTGCCAAAAAGCTTTTACACAAAAAGGAGCTTTACAACGACATTTACCCATTCACACGGGAGATCTGCCCTATCAATGTGAATTGTGTGGAAAACGTTTTGTTCATCGGACATCTTTTTCTATTCATACAATGGCTCATACAGGTATTCGAAATATTCGGTGCAAAATTTGCAACCTAGGAGTACTTAGCAAAAGTCATCTTCGACGTCACATGAGAATACATACGGGAGAAAAACCGTACAAATGTCAGACATGCGGAAAAGCATTTGCGGAAAGATTTGTTCATCACACAAGTTTTAGCATGCATAGTTTAGCTCATACTGGAATTAGAAACATCAAGTGTCAAATTTGTGGAATGGGCCTACTCAGTAAAAGCCATCTTAGGAGACATACAAGAGTTCATACAGGAGAAAAACCATTCTCTTGCACAATTTGCGGCAAATCTTTTGCTGAGAGgtaCAACCTCGTTGCACACCAACGGATTCACGATCCAAATTTAGTGGGACCAACTcgtcaacagaaaaaaaaaattcaaaattgtaAACTATGTAATGGAACATTTGACAAAATTCAATCATTGGAAAAGCACATGGGAATCGTACACAATAAAGATCCAAATATTATTTCTAATTCTACAGTTTTTGAAACGGAAAATTCTTCTAATTTACTTAAATCTACAACTGAGAAATTTCATATGCaaaaatttgaagaaaaagaaacagctaataataaaggagatgtaataaatattataagtaataatggtgataattcaaataatttacccGTGAGAAACTTGCAAAATATTCACAATTCTCATTTAAGGAATTtagaacttttaaaaatattggaAAATGGTAGAAGTATCGAATTGTTAAAAATGCCAAATGGAACAGGAGAAAtggatgataatttaaaaatgtcagCCAGTGGTCCTGTTATGCCTTGGAATTTCAACGGTgccaatttataa
- Protein Sequence
- MGELIIEKKPCCLICDTEVQINQSYSIFYTFITNSGILLANSLEKNLSLKDIGTLSLRSNLLCLKCFEYFEQLTYCESKLVELKGDLWAVFKKTCEKHGEKAETFIRGLSTQTDYRVYECSCKENQGYLQIKLENMDKGEGKKNSLTDNHGSNIITSEEEIEKSEEKFSFDDDPHLTGEGSAKWNKKPESCKLCGKWFKKMSELNRHMVCHLEINSEDSVKDSLSSTGKKKFHFCSICNKKFRRPCEVKEHMMSHNCTSPFICKYCGKKLKSKTGSVYHVLKTHKIDVNDTKKLDEHFFINSNESKSKNENIHTKPKSENIKLREEEKQCSSDFEQSYSSEDELPLAERRKQLIHERIKKESSKVIDKPDTDTTEKTQVPERTKHKSKKYPLSFLKIKREKEEEIFSVTIKEPKFKCDVCGKMWKTKGELNAHKITHSDARPYICEICGQAYKHKPALDVHVGMHRGIYHHQCSYCQKAFTQKGALQRHLPIHTGDLPYQCELCGKRFVHRTSFSIHTMAHTGIRNIRCKICNLGVLSKSHLRRHMRIHTGEKPYKCQTCGKAFAERFVHHTSFSMHSLAHTGIRNIKCQICGMGLLSKSHLRRHTRVHTGEKPFSCTICGKSFAERYNLVAHQRIHDPNLVGPTRQQKKKIQNCKLCNGTFDKIQSLEKHMGIVHNKDPNIISNSTVFETENSSNLLKSTTEKFHMQKFEEKETANNKGDVINIISNNGDNSNNLPVRNLQNIHNSHLRNLELLKILENGRSIELLKMPNGTGEMDDNLKMSASGPVMPWNFNGANL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -