Phum003668.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:117041-121024[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.93 62 3.7 0.0 3 23 8 28 6 28 0.94 2 16 0.12 8 6.5 1.2 1 23 774 797 774 797 0.83 3 16 1.6 1.1e+02 2.9 0.2 1 10 811 820 811 834 0.77 4 16 7.4 4.9e+02 0.8 2.2 2 23 900 922 899 922 0.93 5 16 0.0058 0.39 10.6 1.7 1 23 927 949 927 949 0.98 6 16 2.3e-06 0.00015 21.3 2.9 2 23 952 973 951 973 0.97 7 16 2.3e-05 0.0016 18.1 0.5 1 23 979 1001 979 1001 0.97 8 16 1.6e-05 0.0011 18.6 4.6 2 23 1008 1029 1007 1030 0.94 9 16 0.33 22 5.0 1.0 6 23 1044 1061 1042 1061 0.95 10 16 0.00013 0.0087 15.8 1.4 2 23 1067 1089 1066 1089 0.96 11 16 0.00086 0.057 13.2 0.0 3 23 1106 1125 1104 1125 0.97 12 16 2.8e-05 0.0019 17.9 1.0 1 19 1131 1149 1131 1153 0.94 13 16 0.0021 0.14 12.0 1.5 1 23 1161 1183 1161 1183 0.98 14 16 0.0016 0.11 12.3 3.3 1 23 1189 1211 1189 1211 0.96 15 16 0.0029 0.19 11.5 0.8 1 23 1217 1241 1217 1241 0.95 16 16 0.00073 0.049 13.4 6.1 1 23 1247 1269 1247 1269 0.98
Sequence Information
- Coding Sequence
- ATGGAGAATACTAACACTATTTGTCCAATTTGTACCCTTTATTTGAGGGAAGGAATTAGTTTGCAAGCTCATCTTGACACTCatccaaaagaaaaagttattgaAGCTTTGCTTAAAATATCAAATGGAGGAAATGTTACAACGTCTAACTCTGCCACTACTCTGCCTTATGATGGCTCAAATGCTTCACTTCAAACATTTACAAATTCACATTCATCCTTCTTATCAAATCCTTATGTTAATCCTCCACAGAGTCAAATGACAACTGCAGTGACTTATCAACATTTTATAAGTAGCAATGGATCAACTATTTTACCACAGTATATTCAAGTTCCGTCAGTTATTAATTCCAACAACAATTTACCAGTTATGCCTAATCAGGCGATGAATTTTATTCCTAATCAAACCGTTAATTATtctcaaaatatatataatccaATGTATAATCCTTACATACCTCACCCTTATCCTTTCCAACCATTTTATTCAAACAACCTACCAACATCTGCTTTGCCTCCAgatgattcattcattcaaacaaataatgtaaatgaaaattcgtCTGCGCTAAAACAAAGCGGTCAGGTAATGCCTATTACTCAGTCGAGCACTGCcaagaaaaaaacaacttcAGTTGGTGCAACCAAGTCaataagaagaaggaaaatctTGAAAAAATCAGTTTTGAGATTTTCCGGTCAgcatagaaaaagaagaattttcaGAGCCAAAACAAATGATTCTTCAAGCTCTCTTTCAGTTATCAAATCtccattaaaaggaaaatcagGGGTTTCGAATAAATCTTCGTCTGCTACATCGAAAAGATCAGTGATTAACCTACCCATACCAAAGATTACATTAGGGAATTCcagtaaaaattcaaatataaaaataatgccCAAACCTCCCATAACTTTCATTCCAGAAGATACTATAAATACCCAAACAGATTGTAAAACATCGCCTTTGcatcctccttctttttcaaatattccttcctcgaataattttataaaaaaagaaaatgtccaGTGTGATTTTAGGTCTCGGTCAATGTCATctgaaattattaacgataccTGCGACAATAATGAAGAATTCGATGAGGGAGTTCATTTAAACTCTGTGATTGTTGAATCAAGTTCATTGCAAAATACCAATACTGAATTAAAAGACTGTCAAGACCTTGTGAAAAATGTCGAGAGTGAGGCATCTTGCATTCAGCAAATTATGAAAagtgtaattattaatttggaaAGTGAAAATGATTTACCAGTTGAAAATACTAAAGACCCCCTGAGCTTTGAAGATGCAGAAGAAGAAGTCGATGATTCTGCCAACGATAAACTTGTCGACAATTATAATGATTTCGAATCGCAAGAAGTCATGGAGGAAgtgaatgatgataaaagggtggaaaaagaagaagaagaaaatatatttcaaataattgaaatcggtgaggaaagtaaaattaaaatatctgatgcaaatttaaacgattgttTTTCTGATGGGATTTTCGACAAGAATTTCGAATGCAATCATCAGAGTAGTTCTGAGTTTAcgacaaatcaaaaaataaatatcgtttCGAATAAGAGTGTGAGTGAAAATAATAGAGATCAATCATCTTATTCTGAATTTGTTTTAAGTTGCTCAtcgaatttacaaaataaacatTGTGAAAATGTGACTGAAAATCGAGGAaccattgaaaataatttttactcgaACAACTATTGTGAAAGTGTGAGCATGAGTAACACTTCGAATATAATTGAAAAACCTTCTGTCAAGTCGAATGCTTTTCATTCAGTTTCGTTTGGTGATGCATTGCCGGTTACTTACAATGATTTACAACCCGTTAACACGAgtaaagtttttcaaaatatcGGTCTCAACGGTCCAAATGTTAATCTCGGCAaaaatgcCAACGGTAACAATTTGAGTGAACTGTTGAAAACGGAAAATTCGAACGTTTTAGAATCGGTTATTCATTTAGTCTCGGGTAATaatgaaacgaaaaatgtCATAGATATGAACGAGAAATACGTTGCTTCCACGAGTCAAGCCAACGAAAATCATTTGGATATTTCGAACATGTCGCCCATAGGTTTGAACATTCAAGCGGATGAATCCATGCCCGCGCGGGGAGAATTATCCGAGCAAGAAAGTTTGGGCGCGGAGAATTCGACGTGGAACTTGTTTCACAACGCGTACGCTAACGACACGAAAATATTACAGATGTGGAGAAATGCGGACAATCCGCAAGTCATATCCGTGATAGAAtgcaagaaaaataataataaaaaattcaaatgttcCGTTTGCGGCGAGATTTTCTCTTGCGCCAAAGAGCGGAGAGTGCATAAAAACGCGGTTCACACGAACAAGGAGCAGACGACGccgaaaaaagttaaaaattacgcTTGTAATTATTGCGAACAAGTATTTCTTTCGATTCGCGATCGGAAAACTCACGTCGTCGAAAATCATTTTACCGAattgaaacaaaagaaaaacactaGCCAAAGCATAAAGCAAGAAAAACCGGAACCGGAAACGAACGATGGACCGTTGGAAAAACTCGATGCATCCgttaaaaacgaaatcgttggggaagggggagagaacGGCGTGAAACTTGAAAATCCGTTACCCGCTCCCGAATCCGAATCTCCACGAGTCAAATATTGTTCTCAGTGTCGTTTACCGTGTcaaggtataaaaaaacttcGGGAGCACCAGAGGTTGGAACACGGTAAGGTACACTTCAAATGCGAAACGTGTTCGCAGTGCTTCGACGAAGAGACGGATTACAATGACCACCTATTGATTCACCCTCTCGTGTGCGATAAATGCGGGAAAACGTTTCACAAGAAAGCCAATTTGAATTTGCACATGAAGAGACACTTGGAAACGAGGCCGTACGAGTGTCCATTTTGTCCCAAATCATTCATAACCCGTCAAAAACTCGAAGAGCATAAAAACGGTCACTCGGGCAAGAAACCGTTGAAATGCGGGCTCTGTGATAAAACGTTTAGCAGGCATTCGAATTTGATACAGCATAAAAATTTGCAtcatttaaacgttaaaaaaaaaatcaaagactTCGTGTGCAGGTGCGGTGAAGTTTTTCACAGTCTGAGAAAACTCGAGTGGCACAAGGAAGTACACGAACCCAATCCGAAACCGTGTCCGTTTTGCTCGCGGAAATTCATACACAGCGCGAGCGTGACGAGACACATAAGGCGAGCACACATGCCGGATTATTTGCCGGGAGACAACAGAGAATACGACAACGTCAACTGTCCCGTTTGCGACAAGGTCTACCTCAGGTCATCGTTGGCCGTTCACCTGAGAGTTCACAACGGCGAAAAACCCTTCCCGTGTAAAATATGCAACAAGAAATTTTCGACCAAGTGGAACCTCGAACTTCACAATTGGACTCATCAATCTCGGAACGACATGCCGTTCAAGTGCGACACGTGCAAAAGCGCGTTCTTTCGCGAATCCGATTTCGTGTCTCATTTGAACTCGCACAAGAATCACAAACCGTACACGTGCAACGTGTGCGGTCAGAAATTCATAAGGAAGTACAGTTGTCTGAGACACCAGGAAGAGCACAAGAAGAGCAAGCAGTTTGTTTGCGCCGTGAGCGGGTGCGCAAAGAGTTTTCACAGGGGTTACTATTTGAGAGACCACATGAAAATCCATTCGGGCGTTCGACCGCACACGTGTCACATATGCGGAAAAGCGTCGAGCACGAAATCGAATCACAACAAACACGTTCGAATACACGACACGAGAGAACCCATAAACACGGAAAATTag
- Protein Sequence
- MENTNTICPICTLYLREGISLQAHLDTHPKEKVIEALLKISNGGNVTTSNSATTLPYDGSNASLQTFTNSHSSFLSNPYVNPPQSQMTTAVTYQHFISSNGSTILPQYIQVPSVINSNNNLPVMPNQAMNFIPNQTVNYSQNIYNPMYNPYIPHPYPFQPFYSNNLPTSALPPDDSFIQTNNVNENSSALKQSGQVMPITQSSTAKKKTTSVGATKSIRRRKILKKSVLRFSGQHRKRRIFRAKTNDSSSSLSVIKSPLKGKSGVSNKSSSATSKRSVINLPIPKITLGNSSKNSNIKIMPKPPITFIPEDTINTQTDCKTSPLHPPSFSNIPSSNNFIKKENVQCDFRSRSMSSEIINDTCDNNEEFDEGVHLNSVIVESSSLQNTNTELKDCQDLVKNVESEASCIQQIMKSVIINLESENDLPVENTKDPLSFEDAEEEVDDSANDKLVDNYNDFESQEVMEEVNDDKRVEKEEEENIFQIIEIGEESKIKISDANLNDCFSDGIFDKNFECNHQSSSEFTTNQKINIVSNKSVSENNRDQSSYSEFVLSCSSNLQNKHCENVTENRGTIENNFYSNNYCESVSMSNTSNIIEKPSVKSNAFHSVSFGDALPVTYNDLQPVNTSKVFQNIGLNGPNVNLGKNANGNNLSELLKTENSNVLESVIHLVSGNNETKNVIDMNEKYVASTSQANENHLDISNMSPIGLNIQADESMPARGELSEQESLGAENSTWNLFHNAYANDTKILQMWRNADNPQVISVIECKKNNNKKFKCSVCGEIFSCAKERRVHKNAVHTNKEQTTPKKVKNYACNYCEQVFLSIRDRKTHVVENHFTELKQKKNTSQSIKQEKPEPETNDGPLEKLDASVKNEIVGEGGENGVKLENPLPAPESESPRVKYCSQCRLPCQGIKKLREHQRLEHGKVHFKCETCSQCFDEETDYNDHLLIHPLVCDKCGKTFHKKANLNLHMKRHLETRPYECPFCPKSFITRQKLEEHKNGHSGKKPLKCGLCDKTFSRHSNLIQHKNLHHLNVKKKIKDFVCRCGEVFHSLRKLEWHKEVHEPNPKPCPFCSRKFIHSASVTRHIRRAHMPDYLPGDNREYDNVNCPVCDKVYLRSSLAVHLRVHNGEKPFPCKICNKKFSTKWNLELHNWTHQSRNDMPFKCDTCKSAFFRESDFVSHLNSHKNHKPYTCNVCGQKFIRKYSCLRHQEEHKKSKQFVCAVSGCAKSFHRGYYLRDHMKIHSGVRPHTCHICGKASSTKSNHNKHVRIHDTREPINTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -