Phum003679.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:207480-209715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3e-05 0.0022 17.6 1.3 2 23 230 251 229 251 0.97 2 10 0.00067 0.045 13.5 0.4 1 23 257 281 257 281 0.94 3 10 0.00041 0.027 14.2 1.8 1 23 287 309 287 309 0.98 4 10 6.5e-06 0.00043 19.9 2.7 1 23 315 337 315 337 0.98 5 10 0.047 3.2 7.7 1.6 1 23 343 365 343 365 0.94 6 10 1.6e-05 0.0011 18.6 1.3 1 23 373 395 373 395 0.98 7 10 0.00098 0.066 13.0 0.2 1 23 401 423 401 423 0.96 8 10 9.9e-06 0.00067 19.3 1.4 1 23 429 451 429 451 0.98 9 10 8.8e-05 0.0059 16.3 0.9 1 23 457 479 457 479 0.98 10 10 3.8e-05 0.0025 17.5 3.8 1 23 485 507 485 508 0.96
Sequence Information
- Coding Sequence
- atggtcGAAACGGTTAATTCGTTAGAAGATCTATGCCGTCTATGTGCTGGAAAAATAGATGTTCTCATGGGAATCAATATATTCGATTCGGATCATaggcaaatatttaaaaaaataaccgtgTGCCTTCCAATACagatttcAATTGATGACAGTTTTCCCAAAATGGTTTGCGTTGAATGTGCCTGCAAACTTGATCTACTATTTGATTTTAGAGAGAGAAGCATATTAACAGCACATCTTTTTACCAATATGATAactgttaataatgataacataaTCGAACAGACAATTTCattacaagaagaagaagaacaacaacaacaacctgttGTCATGGAATCTAATTATAAtcaagataatgatgatgattttaaaattcATTCTCCAAAGTTCAAAAACGATTTGTTATCATCACAAGTTTGTTCAACTGAATGTGAAAATAATGTACATGAGAGTAACATAGTTTTGGAATCGTCGACAGATCTTGTACCTGAAATGAAATCAAATTCAGATTTGATATTAAGTGACAGTAagatgaatgatgatgatgatgtcggtGATGTGGATGGTAAAAAGGATGTTGTTAGCGATCCTCCTAATGTGGAAACTGTCAAAAATCCTCAGACTgtttcatcgaaaaaaaatgtcagattAAAAacgggtggaaaaaaaaacgaaagtaaaGTTTGTATGGAATGTGGTAGACAATATCAGACGAATTATAAATTACAAGAACACATGAGAAAACACACTGGTGAAAAACCTTATTCATGTTCTTATCAGGATTGCAAAAAGGCATTCAGATCGAAAATCGGTTTGGCACAACATGAAGCAAATCATTCGGGTCAATATGAATTTTCATGCGGTACATGCGGTAAAGGATTTCAGTGTAAATCGTATTTGGTAGTTCATCAAAGAGTTCACAGTGATTTAAAACCCTACGTTTGCAAACAGTGTTCTCAAAGGTTTAAAACGAAACAGAGTTTGTTGGATCACATGAACAGGCATTTAGGAGTTAAACCTTTTCTATGCGATATATGCGGAAGAGGTTTTTTAACGAAAGGATTATGTAAATCTCATCAGAAGGTTCATTCCGGAACGGATAATAGGCAGTATCCATGTAACGTttgtagaaaattatttgttagcaaatcatatttaaatacTCATTTTAGAATACACACGGGAGAGAAACCTTTCATGTGTGagGTGtgtggaaaaggttttttaacaAGAGTCGATCTTAGAATACATTCGACGATGCACACGGGAGAGAAAAGTTTCGTTTGCGAAATGTGTGGTAAAGCATTTGCGAGGAGAGATGCGTTGAGATGTCATAGACGATCTCACACGGGAGAAAGGCCGTACAAATGCGAATTTTGCGGTCAAAGTTTCACGCAGTTTAGTCCTATGGCCATACACAAAAGACTACACACGGGAGAACGTCCGTACGAGTGTGACGTATGTAGGAAAACGTTCGTTTCGAAATCCACAATGATTTCCCATAAGAAAAAACATCATTCGACGACAAATAACGAGGaatctCAATTTCAATTGGTAACCGTCGAAGTACAACGGGATGATGGAAATTTAGCCCCAGAAGAAGGACaccaacaacagcagcagcagcaacttGTCGTCATTGACGAATCCTCGCCATTATATTTAACGATAAGCAAAAGACATTCTGGTAcggaatcgtcgtcgtcgtcgtcgaaaataaattcattaaactctttgaaaaatgaaaattctacCGTATCAGTTGagtga
- Protein Sequence
- MVETVNSLEDLCRLCAGKIDVLMGINIFDSDHRQIFKKITVCLPIQISIDDSFPKMVCVECACKLDLLFDFRERSILTAHLFTNMITVNNDNIIEQTISLQEEEEQQQQPVVMESNYNQDNDDDFKIHSPKFKNDLLSSQVCSTECENNVHESNIVLESSTDLVPEMKSNSDLILSDSKMNDDDDVGDVDGKKDVVSDPPNVETVKNPQTVSSKKNVRLKTGGKKNESKVCMECGRQYQTNYKLQEHMRKHTGEKPYSCSYQDCKKAFRSKIGLAQHEANHSGQYEFSCGTCGKGFQCKSYLVVHQRVHSDLKPYVCKQCSQRFKTKQSLLDHMNRHLGVKPFLCDICGRGFLTKGLCKSHQKVHSGTDNRQYPCNVCRKLFVSKSYLNTHFRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEMCGKAFARRDALRCHRRSHTGERPYKCEFCGQSFTQFSPMAIHKRLHTGERPYECDVCRKTFVSKSTMISHKKKHHSTTNNEESQFQLVTVEVQRDDGNLAPEEGHQQQQQQQLVVIDESSPLYLTISKRHSGTESSSSSSKINSLNSLKNENSTVSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -