Phum009653.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- ZNF341
- Assembly
- GCA_000006295.1
- Location
- NW:221310-223627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.004 0.27 11.1 0.9 1 22 7 28 7 28 0.97 2 13 6.6e-06 0.00044 19.8 0.7 2 23 258 279 257 279 0.97 3 13 9.7e-07 6.5e-05 22.5 0.7 1 23 285 307 285 307 0.97 4 13 2.6e-05 0.0018 18.0 3.3 1 23 338 360 338 360 0.98 5 13 0.019 1.3 9.0 0.3 5 23 372 390 366 390 0.90 6 13 9e-05 0.006 16.3 0.7 1 23 395 417 395 417 0.95 7 13 5.5e-05 0.0037 16.9 1.0 2 22 432 452 431 455 0.90 8 13 0.00035 0.023 14.4 2.3 1 23 457 479 457 479 0.98 9 13 2.5e-05 0.0017 18.0 4.0 1 23 487 509 487 509 0.96 10 13 8.4e-06 0.00056 19.5 2.7 1 23 515 537 515 537 0.97 11 13 6e-05 0.004 16.8 0.9 1 23 542 569 542 569 0.95 12 13 0.00012 0.0079 15.9 2.1 2 23 576 598 575 598 0.96 13 13 0.073 4.9 7.1 5.8 2 22 608 628 607 628 0.93
Sequence Information
- Coding Sequence
- ATGCAAGAAAAAGACTCATTTAAATGTGGCAGATGTAAGATTCAATTTGAACAATTATCTCAATTTATTGATCACAAGAGGACATTATGTAAATCTCCTGAAACTCCCATGTCTGATATTTCGACAAAATTGTTAATGGAACTTCCTGAATCTTCTTCATTAGAAAAGACTTACCTTATATCATtagataataatttcaaacatGATAATGCCAAAGAAAATGTAATTCAATTTATGAGAGATGATCAACCAAGTGAAAATGAGCCAGTAACATTTCTTATAAGTGAAAATCAATTGGATATTGATAATTCTTCGGCCACAATTTCCAGTCAAATATTTATTCCTGCAAAAATTCCTCAGGAAAATAATTCAGTTTACATTGCTAATTCTGAATGTAACAAAGGAACAGAAAGCATAATTATAAATACTGATAACTGTGCCAAACTTAATTCagataatataattttaagtaattcAGTTGAAAATGAGCCATTGGATATAGAATTTTTTCTAACTCAAAGTACAATAGATACCAAGCAAAATGACACTGTTATACTGactaattttcaaaatatatcaactgaaaataatatttctcaAAATTCTGATGGCATTGTTTCAGTTAATGATTCACATAATACATCAcaaatcaatgaaaatttattaaaacttatttatgaGCAATTGTCAAATAAGAATAATAGTCATGACACGTTaacaaattttgttaaaattgataaaaaaaatcttgataaaatcaaatcaaaattagAGTGTTCTTTTTGTGGtaaagaatttgaaaaacaatttaatttacaacagCATGAACGAATTCACACTGGAGAACGTCCTTTTCAATGTATTATTTGTGGAAGAGCCTTTTCTCAAAAGTCAAACGTTAGAAAACATATGATTAGGCACAAAGTATGGCCTCAGGCTCAAAAAACATTAAAGATTGATAATGATCATACTGAATCAACATTAAGTCAAGAATTTTTAGATCAAATTGATTATTCCTGTCAATATTGTTCCTTAAGTTTTAAGTCTTATTCTCagtataaaaaacatttaagtgTTCATTCTAATTTTAAGgtttatcGTTGCATTCAAAAGGGATGCAATGAAACTTTTAGTGATTTAGATGAGTTTTTATTACATTCAAAAATTCATTCTTCCGCAGAATTTCGGTGTCATATATGTTTAAAAGCCTTTACTAGTTTGGATGATTTGGGAGCTCATCAATATGACCATGATTTAagtgggaaaaataaaaaagaatttgacgTtaaattaaaatgtaaaatatgtCACGCACAATTTAAAACTTTGGAGTCTTTAAAAAATCACATGGCGGTTGATTCACACAATTACGAATGCGTTCATTGTCGAAACGTTTTCAGTTCGGAAAGATTTCTTCGCCGACATTTAGCAACTCATCTCGATCCCTCTGAATCTAAATATAAATGtatgaaatgtaaaaaaacatttcggaCTCAAAAATATCTTAACAATCACGCATTCGTTCATTCGGAGGAGAAACCCTTTAATTGCGAACACTGTGATAAACAATTTGCGTCGAAGTATAGACTGAAAAGGCATTTAGCCATTCACTTGAATCAGTATTTCGAGTGTCCTTTTAAAGCGTTTTTAGgttgtttcaaaacattttacaGAAAAGATAAACTTAGAGATCACATAGCGACTCACAGCAGCGTAAGATTAAAAACGTGTCAAATTTGttcgaaaacattttcatcactattaaaattaaatcaacatttgaaaaaagatcacaaaataataaaaagtaaaaaaatatcaaggtgcttaaattgttttcaatcGTTTAGAAAGCAAAAACAATTAATGCAGCATCACTGCACggtgggagaaagaaaaatcaaggCCAATACTGAAATATCAGATCATCAAACAGAAGGAACAGAAAATGTGTCCAACATCGAAATTATTATGTTTTGTTTAATCGATTATTAG
- Protein Sequence
- MQEKDSFKCGRCKIQFEQLSQFIDHKRTLCKSPETPMSDISTKLLMELPESSSLEKTYLISLDNNFKHDNAKENVIQFMRDDQPSENEPVTFLISENQLDIDNSSATISSQIFIPAKIPQENNSVYIANSECNKGTESIIINTDNCAKLNSDNIILSNSVENEPLDIEFFLTQSTIDTKQNDTVILTNFQNISTENNISQNSDGIVSVNDSHNTSQINENLLKLIYEQLSNKNNSHDTLTNFVKIDKKNLDKIKSKLECSFCGKEFEKQFNLQQHERIHTGERPFQCIICGRAFSQKSNVRKHMIRHKVWPQAQKTLKIDNDHTESTLSQEFLDQIDYSCQYCSLSFKSYSQYKKHLSVHSNFKVYRCIQKGCNETFSDLDEFLLHSKIHSSAEFRCHICLKAFTSLDDLGAHQYDHDLSGKNKKEFDVKLKCKICHAQFKTLESLKNHMAVDSHNYECVHCRNVFSSERFLRRHLATHLDPSESKYKCMKCKKTFRTQKYLNNHAFVHSEEKPFNCEHCDKQFASKYRLKRHLAIHLNQYFECPFKAFLGCFKTFYRKDKLRDHIATHSSVRLKTCQICSKTFSSLLKLNQHLKKDHKIIKSKKISRCLNCFQSFRKQKQLMQHHCTVGERKIKANTEISDHQTEGTENVSNIEIIMFCLIDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -