Phum010651.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:17575-20815[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.015 0.99 9.3 0.1 2 20 81 99 80 101 0.93 2 23 7.7e-07 5.1e-05 22.8 2.1 1 23 107 130 107 130 0.98 3 23 0.15 9.8 6.2 0.3 8 23 172 188 171 189 0.93 4 23 0.026 1.7 8.6 4.7 2 22 196 216 195 216 0.94 5 23 0.0083 0.56 10.1 3.1 1 23 223 246 223 246 0.96 6 23 0.034 2.3 8.2 4.0 1 20 278 297 278 298 0.95 7 23 0.0019 0.13 12.1 1.5 1 23 324 347 324 347 0.97 8 23 0.00022 0.014 15.1 0.8 1 23 379 401 379 401 0.97 9 23 3.7e-06 0.00025 20.6 1.0 1 23 410 432 410 432 0.97 10 23 0.00092 0.061 13.1 3.4 1 23 438 460 438 460 0.96 11 23 0.031 2.1 8.3 2.9 1 20 466 485 466 487 0.94 12 23 0.00075 0.05 13.4 0.5 1 21 494 514 494 515 0.94 13 23 0.013 0.86 9.5 1.3 1 23 574 596 574 596 0.96 14 23 0.029 2 8.4 2.2 1 23 602 625 602 625 0.96 15 23 0.00011 0.0073 16.0 0.6 1 21 631 651 631 652 0.95 16 23 0.0011 0.077 12.8 1.3 1 20 659 678 659 680 0.93 17 23 0.28 19 5.3 4.0 1 23 712 734 712 734 0.98 18 23 0.00017 0.011 15.4 2.7 1 23 740 762 740 762 0.98 19 23 0.0019 0.13 12.1 0.2 3 23 800 821 799 821 0.98 20 23 0.00012 0.0082 15.9 0.7 3 23 842 863 841 863 0.98 21 23 2.1e-07 1.4e-05 24.6 0.5 1 23 873 895 873 895 0.98 22 23 0.00044 0.029 14.1 1.2 3 23 904 925 903 925 0.95 23 23 0.0026 0.17 11.7 0.7 1 19 931 949 931 952 0.95
Sequence Information
- Coding Sequence
- ATGATGCACGATGGAAAAggaataaatgatgatgaggaaAAAGGATcggaaaatttggaaaaaataaaatttaacgaattgaaaaatgatgatgatgatgatgatcgtttCGAATGGAAATCACGGAAGaagaaatcgataaatttgaaaaaggttATTGGTAAAAAacgaggagaagaagaaaatgacgtggaaaattcggaaaacaataataaatcgataaataagaaaaaaaatgtctcctgtaaaatttgtttgaaaacATTCGACGAGgggtcgttattaaaaaatcatttgttgGAAAACGAATGTCAACGTTTCCGGTGTGAAAAATGtggaaaacaattgaaaagtaataaaaatttacaaaaacataTCAAGACCGAACATGCGatgaatgatgacgtaatgacgaacgtggaagaagaagaagaaggagaaagatcgTCAATCgaacttttggaaaattccgGTGAAAATCGTACggaaaaacgaagaagaaaatcctttgaaaaaaaattttccgacatcGATCAATTAAATTCTCACATCCAATCCGATCATcatttggggggaaaaaaatggaaatgcgATGGAtgcggtaaaaatttttcctgcgAAAAAAGTTTGTGTCGTCataagaaaacattttccgaGGAACATTGGTTTCCGTGTGAATTTtgcaaaatgaattttcaccgaattgaaaatttcatccgacatttaaaattaaaacattctaAAGTTACGATGAATGCTATGAAAGCGGGGGAAATCATTTtaagaattttcatttacgaaaacgaaaacgataaAAAGTCCAAAACGATTTTCATATGCACGaaatgttgtaaaattttttaccaacgtgaaaatttacaaaaacatCACGTCGAAAATTGTACGGAAATGGTTAAACCGGAAGAAGAAccgaaaaacggaaacgaaagcggggaaaattttaacgatttcaaatgtttttcatGCGATAAAAGTTTTGTGAGTTTGGAAGGTTACGaatatcataaaaataaaattcattccaatgtcgaattaaaaaaaaataaaagaaataaaaaagaaaatgatgacgactgtgacgattttatttttccaattgataataataacgaatttatttgtcaagtttgtaaaaaatcatttccggtgaaaaatctttttaacgAACATTTAAAAGAACACGAAATTCCGGTGAAATACGGACTCCATTCGTGTTCCATATGTCCGAGATCATTTTCCAGCAGCGATGGATTAAAATATCATTTGGCTACCCACACGGGTGAGAAAAGGTACTCGTGTAGAGAATGcaagaaaaaattcataaaaaaaactcatttgttAGAACACGAAGGTActcattcgaaaataaaatattttaaatgtttgagaTGTCCGAGAACTTTTCACACGGATTCCGCATTTCGAAaacacaacaaaaattttcccggtCCTCATTCTTTTCCATGTGAGAAAtgcggaaaattatttacaaaagaatCCATGATCGAAAAACATATTTGCGTGGATTTGGCGAATGTGACCGTGGCACCGGAAGTGAAAGAATTGTTAAATGGCGGTGAGGTATCTgtcaaagaagaagaagaaaacatgGCGACGACGGAAACGAATGATGAAACGTTCGGAAAAACGATTTCcgccgaagaaaaaaaaacttgtggtgatgataataataattctcatACATgttataaatgttttaaaatttttcctaatttAAACGAGGTTCAAATCCATCAGGAGGAACACAtcggaaaacaaaattataaatgtaGATTTTGTTcgaatgttaattttaaaagagcaGACGATTTTAATTCTCACATTCGTTATCATTTGGGAAATTCACCCTACGTGTGTTTAAAatgtaatagaaaatttatttcacctTCGACGTTATCCTCGCACTTGAAAAAATATCCCGACGAACATTGTTTTCCCTGTGGAAAATGCGAACAAAGTTTcaccacgttaaaaaaattacaaaatcacGAATGCATTTTCacggaaaattcaaataaattcaCTTGCGCTTGTAAATCTTTATTCAAAAACTGGAACGAATTTGCCGAACATGCTGGAACGAGGAAACCTTACAGGTGTTGTACCTGCGATCAAGAACACGCGACCCTAAACTCTTTGGCGAAACACGTAAGAAAACACACTGGGATAAAACAATATTCTTGTGAAAAATGTTCAAAATCCTTcaggattaaaaataattattttttacatttaaaaatacacaaggaggaggaagaggaggaggaggaggagagtaaaaaaattcattgtcaACATTgcgattataaaaataaatcacaaaaaagaatgaattttcatttgttcagTACTTTGTGTCCGATTTGtggaattatttttccatttaaaaatcgtATGAAAAAACATTTGGAAACGGAacatggagaagaagaagttcCAGACGAatggaaaaacgttaaaaaaaaattatcccctGTTTTGTGTAACCTCTGTGGAAAATTACTCACTAATAAATACCTGTTGGCAAAACATATGAAAAAGGTTCACAATCCCGACGTGACGAACGTTGATGAATTCAAATGTGACGAATGcggtgaaatatttaaaaggaaaaattcacttttaaaACATATGGAAATTCACGAATCACCTCCACGTTTGAAAAATTGCAACGAATGCGGtcaagaattttattttacaaaagatTTAAGGAAACACGTGAGAGAAAAACACGAGACTGATAAACCATTTTCTTGTTCAaaatgttggaaaaattttaaagtttccgCAAGTTTAAAATATCATTCAACGATTTGTGGCGACAATCACGTGGtaggaaattatttaaagaaaatacaaAACGAAGAAGAATTTACAAATGGCGGTTATCAATCACTTCCGGTTACGAATCAACCCTGTGCCATGATATACTGGATGTGGAATCAAtga
- Protein Sequence
- MMHDGKGINDDEEKGSENLEKIKFNELKNDDDDDDRFEWKSRKKKSINLKKVIGKKRGEEENDVENSENNNKSINKKKNVSCKICLKTFDEGSLLKNHLLENECQRFRCEKCGKQLKSNKNLQKHIKTEHAMNDDVMTNVEEEEEGERSSIELLENSGENRTEKRRRKSFEKKFSDIDQLNSHIQSDHHLGGKKWKCDGCGKNFSCEKSLCRHKKTFSEEHWFPCEFCKMNFHRIENFIRHLKLKHSKVTMNAMKAGEIILRIFIYENENDKKSKTIFICTKCCKIFYQRENLQKHHVENCTEMVKPEEEPKNGNESGENFNDFKCFSCDKSFVSLEGYEYHKNKIHSNVELKKNKRNKKENDDDCDDFIFPIDNNNEFICQVCKKSFPVKNLFNEHLKEHEIPVKYGLHSCSICPRSFSSSDGLKYHLATHTGEKRYSCRECKKKFIKKTHLLEHEGTHSKIKYFKCLRCPRTFHTDSAFRKHNKNFPGPHSFPCEKCGKLFTKESMIEKHICVDLANVTVAPEVKELLNGGEVSVKEEEENMATTETNDETFGKTISAEEKKTCGDDNNNSHTCYKCFKIFPNLNEVQIHQEEHIGKQNYKCRFCSNVNFKRADDFNSHIRYHLGNSPYVCLKCNRKFISPSTLSSHLKKYPDEHCFPCGKCEQSFTTLKKLQNHECIFTENSNKFTCACKSLFKNWNEFAEHAGTRKPYRCCTCDQEHATLNSLAKHVRKHTGIKQYSCEKCSKSFRIKNNYFLHLKIHKEEEEEEEEESKKIHCQHCDYKNKSQKRMNFHLFSTLCPICGIIFPFKNRMKKHLETEHGEEEVPDEWKNVKKKLSPVLCNLCGKLLTNKYLLAKHMKKVHNPDVTNVDEFKCDECGEIFKRKNSLLKHMEIHESPPRLKNCNECGQEFYFTKDLRKHVREKHETDKPFSCSKCWKNFKVSASLKYHSTICGDNHVVGNYLKKIQNEEEFTNGGYQSLPVTNQPCAMIYWMWNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -