Phum001868.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- gl
- Assembly
- GCA_000006295.1
- Location
- NW:526736-527574[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.9e-06 0.0025 17.1 0.3 18 41 127 147 108 149 0.90 2 5 0.055 35 3.8 0.2 18 41 155 175 150 177 0.83 3 5 0.00059 0.37 10.1 1.4 5 38 171 204 167 204 0.80 4 5 6.8e-05 0.043 13.1 0.7 18 40 211 230 207 233 0.89 5 5 0.16 1e+02 2.3 1.2 18 40 239 258 231 260 0.82
Sequence Information
- Coding Sequence
- atgaaatttcccttccttaatgtacaatGGACGTCAAATAATACATCAAATCCATCACCGGTTTATTATACTAATCAGAATATATTAAGTCCACAATCTTATAATAATGGTACAAGTGCCACGTATTCATTTACTGCAGATTTCCGACCGCAAAATCCTACAACCATAACACCGGATTTTACAATaccgtcatcatcaccaccgtcgacagcaacagcaacgaCATCGTTTAAACCCATAAGTAAGTCAAATAGaagaaatggaaatttttcaacaaaaataaCAGCCTCTGCTTCAGCATGTTTTCATCAAAAtgataatcattttaataaatattcaccGACGTCAGACGAGGATTCGTTATTTCCTCATTCGAATCTCTGTCGTATATGTGGTAAAACATATGCGAGACCGAGCACTTTAAAAACGCACTTACGCACTCATTCCGGTGAAAAACCATATAGATGCGACGAATGTAATAAATCCTTCAGTCAAGCAGCTAATTTAACGGCTCACGTTCGTACACATTCCGGTGAAAAACCATTTAGGTGTCCCATTTGCGGCCGAAGATTTTCACAATCCTCTTCCGTGACGACACACATGAGAACCCATTCCGGTGAAAGACCATACAGGTGCAGACTGTGTAAAAAAGCATTTTCCGATTCTTCCACACTCACCAAACATTTGAGAATACATTCCGGTGAAAAACCATATCAGTGTAAATTGTGCTTGCTTAGATTTTCACAATCCGGTAATTTAAATAGGCATATGAGAGTTCACGGAAGTAGTTTAACcgtttga
- Protein Sequence
- MKFPFLNVQWTSNNTSNPSPVYYTNQNILSPQSYNNGTSATYSFTADFRPQNPTTITPDFTIPSSSPPSTATATTSFKPISKSNRRNGNFSTKITASASACFHQNDNHFNKYSPTSDEDSLFPHSNLCRICGKTYARPSTLKTHLRTHSGEKPYRCDECNKSFSQAANLTAHVRTHSGEKPFRCPICGRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSSLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165063;
- 90% Identity
- iTF_01165063;
- 80% Identity
- iTF_01165063;