Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-15 2.1e-12 45.8 0.1 2 45 90 133 89 133 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-15	2.1e-12	45.8	0.1	2	45	90	133	89	133	0.94

Coding Sequence: AtgacatggaaaaaaaaaagaagaaggggaAGAAATTCTtggtttgcaaaaaaaagaagtagaagaatATGTCGAAGTATAaaTGTTAAAGTTGAACCTTCTGAAGATGCACCAAGTCCATATACTGATATATCTATGATTGATGACGAAACCAGCCCGAACGAcaaggtttCAGCTTTTCCATCGGATATGAGAAATGTTTCCTCTGGAATAGCAACATACGTGCCTCAACAGAAACCGGAATGGAAAAGATACAAGCAATACACGAGAAACGATATATTAAGTGCAATCGAAGCCGTTAGAACAGGTATGAGCGCTTTGCAAGCAGCTAGAAAATACGGTGTCCCATCTCGCACTCTCTACGACAAAGTCAAAAAACTCGGAATAACTACAAGCAGGCCATTTAAAAGAGGAACAAACGGTGGaaattcaaattcatttcCCTACAACATGAGTTCGGGATTGGGACACGTTTTCGGTGGTGTTTCCGAAAGCGAAGAACCCATGCCGCCCCATCCCGGAGGTACGTTACTCGAACCCATGTTTTTACAACACGCGTTAGAAAGGAGCAAAGGTGAGTTTACGGAAAGGGAAGCACTCATGGCATTGGCATCGGCTCACGCACAGGCATCCGCGGGATCGGGATCCGGATCGAGACATTCTGGaagcaataataattcatCGCCGGAAAACAACGGAAGATCTCCTAGCCCGAACATGTTATCGATGAAATACATGAGACACGGAAGCATGACACCATCACCCAACAACGACGATCGAATGGACGATGAGGATCAAGTAGAAGATTTATCAATCACGAGAAAAGAAAtacatcctcctcctcccacgGGAAGCGTTATTGTACCCCCGATGAGGAAATACTTGAATAACTCAATTGCCATATCTAGATCATTTGTTACGTAG
Protein Sequence: MTWKKKRRRGRNSWFAKKRSRRICRSINVKVEPSEDAPSPYTDISMIDDETSPNDKVSAFPSDMRNVSSGIATYVPQQKPEWKRYKQYTRNDILSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGGNSNSFPYNMSSGLGHVFGGVSESEEPMPPHPGGTLLEPMFLQHALERSKGEFTEREALMALASAHAQASAGSGSGSRHSGSNNNSSPENNGRSPSPNMLSMKYMRHGSMTPSPNNDDRMDDEDQVEDLSITRKEIHPPPPTGSVIVPPMRKYLNNSIAISRSFVT

Sequence clustering based on sequence similarity using MMseqs2