Phum005158.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:126088-127363[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-09 2.6e-06 26.4 0.0 8 36 49 76 43 84 0.86 2 2 1.1e-10 1.7e-07 30.1 0.0 1 40 211 250 211 254 0.92
Sequence Information
- Coding Sequence
- ATGAGATTCGATGAACCCCCCGTCAAAAATGTTTTGGAAACGAAAACGGATGTGACGTcaggggaaagaaaagaaataaaattgaaaaaaaattcagttcgAAGAAATTGTTACAAACAGTACACTATGGCGAGCATGTGGGGAGCATTGGAAAAAATACAAGAGGGTTTAAGCGTTTACAGAGCATCTTTGGAATATGGCGTACCAAGGAAAACACTTAGAAATTGGATGAAAAAATACAACATAATGAatttatGTTCGCTAGCATTAAATCACGTCGAATGCGTTATGGACCAAGAAAAAGTCAAAACGGGAAATACGGACATGATGAATAAAAACGCATTGAAAACGCAGCAAAGACTTCAGGAACACAATTACACGAATCCGCCGATGGATGAAACgatatacaataataaaattgaaatgacaAATGGCGGAACAATATTAAACACGGGTGACaatcagaaaaataaaaattctaatttaaaattaggaGGAAATCACTTACagcaaaaaaacgattcgaaacaAATGATTCAgGCGACTTCAACGATTTCTCACGATCAGAGATCACCAATCGATTCTAAAAGCAAGGCCATTAAAAAAGATGTTTTTAATAGAATAAGAAGGTCGGAAGAAGAGTTACAAAAAGCTGCGGAAATGGTACGAGGAGGTATGACTTTTCAAACGGCATCCGATACTTTTAACATTCCCATTTCTACAATTAGattttacATGGCTAGAAGAGGTATATTACCGCAAAGGAGACGAGGAAGAGGTTCGAGCGGTGTAAGAGATGACGATTTAATTCATCCCCCATTTGAAATAATACACTATCGACTCCCTGATATTGACAAACCAATTTAA
- Protein Sequence
- MRFDEPPVKNVLETKTDVTSGERKEIKLKKNSVRRNCYKQYTMASMWGALEKIQEGLSVYRASLEYGVPRKTLRNWMKKYNIMNLCSLALNHVECVMDQEKVKTGNTDMMNKNALKTQQRLQEHNYTNPPMDETIYNNKIEMTNGGTILNTGDNQKNKNSNLKLGGNHLQQKNDSKQMIQATSTISHDQRSPIDSKSKAIKKDVFNRIRRSEEELQKAAEMVRGGMTFQTASDTFNIPISTIRFYMARRGILPQRRRGRGSSGVRDDDLIHPPFEIIHYRLPDIDKPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -