Priv012158.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- stc
- Assembly
- GCA_963082725.1
- Location
- OY720154.1:5816629-5820699[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 2.2e+04 -4.1 1.6 15 19 397 401 396 401 0.81 2 13 0.02 2.2e+02 2.3 0.5 4 10 430 436 429 436 0.95 3 13 7.8e-07 0.0085 16.4 17.3 3 19 443 459 442 459 0.94 4 13 0.0093 1e+02 3.3 9.6 1 18 495 512 495 513 0.90 5 13 0.98 1.1e+04 -3.1 0.8 6 10 543 547 542 547 0.89 6 13 3.8e-05 0.41 11.0 10.6 1 19 553 571 553 571 0.92 7 13 1e-05 0.11 12.8 13.2 4 18 619 633 612 634 0.88 8 13 0.054 5.9e+02 0.9 12.5 1 11 674 684 674 696 0.90 9 13 4.3e-09 4.8e-05 23.6 12.4 1 18 701 718 701 719 0.97 10 13 0.69 7.6e+03 -2.6 0.2 6 10 748 752 747 754 0.81 11 13 2 2.2e+04 -10.7 14.1 10 18 766 775 752 776 0.72 12 13 1.6e-05 0.17 12.2 8.4 1 16 812 827 812 834 0.88 13 13 7.9e-05 0.86 10.0 10.8 1 19 844 863 844 863 0.93
Sequence Information
- Coding Sequence
- ATGGAACATCGTAATCCTAATGAAAATGGTTACAGAgataattatacaaattttgatcaatttttaaatcaatacaATATGGCTTCCAATACTAATGATATACAATATCTGCCTTACGATTATCAAACATCCGGATCAGAAACATATGGATATGGATATagtaatgaaattaataattttcaagttgaaaattcaaatttattaccAACAGCCGCAGAATTTGTACCAAGATGGCAAGATCAAAAGTATCAGGAACAAAAAGAACCAATCCCATCACTAGTAACATATGAAGTTCCAAATGATATTAGATCATATGAGTATTATAATGGTAATTTAGATCAATTATCATACGACAATGGAAGTCAATTAGAATTTGCTAATTTAGGGGCGTCAGAAATCAATATAAAcgcaaatacaaataaaaatgtttcaacagaaaaaaataaaaatcaacagcaacagcagcaTCAGCAAAATCGTGGATCTACAGGAAAATGGGGATCTCAtagtaataaatttaatcaaatacaaactaacaaaaataatttaggacaaaaaaattataataatcgaTCAGATGGTCAACGTTCATCAAGTTCTGTAGTTTATGAACGTGGTAGAAATCGTTACGAAGATGAATCACAAGCAAGTAACAATAGGAGACGTCATAATCGTTATGATGAACGGtcacaacaacagcagcagcagccACAACAAGGTaatggtggtggtggtggtgccGCATCGTCTTCAGTAGGAGGACGTTATCGGAATGAAGATCGCTCAAATGGAAAATGGGATTCGGACCGTAATTAtcgtaataattataaagattCAAGAAATTATGATCGTAATGAATGGCGTTCAGCAACACACGATGataataatgaacaaaaatataataaagaaagtaCTGCGCgtaatttcaatttaacaacaaaaaatcattCTGAATATAAAACTGAtacgaaaaatttaaaaactgaaacaaaaattgacgATGAAAAATTTACTCAACGTGAAAAATTATCACGTGAAATTGATGGTGGTAACCTGGAATGTTTGGTTTGTTGTGAAAACATAAAACCATTTCAATCAACTTGGTCTTGtaataattgttttcatataatACATTTAAATTGCACTATAAAATGGGCAGCAAGTTCTAAATCAGATGAGGGATGGCGTTGTCCGGCATGTCAAAATGTCACAAAACGTATACCAaaagattattattgtttttgtggtaaaacaaaaaatccaCATTATAATCGGAATGATATGGCACATACATGCGGTGAATTATGTGAACGTATGGATGGTTGTATACATCCTTGTACGCAATTATGTCATCCAGGACCTTGCCCACCCTGTCAAACGACAGTAACACGTTATTGTGGTTGTAATAAAACATCACGTATCATGCAATGTAATCAAAAAATTGATGTTAAATGTGATTTAACATGTGACAAATTGTTGAATTGTAATTTACATCAATGTATCGAAAAATGTCATCAAAATGCATGTACTGATTGTGAGAAAAAAGTACAACATAAATGTTATTGtggaaaagaggaaaaaaatgttgattgtaatacagaaaataataacaatttattatattcttgtAATAAAGTATGTAATAAACTGTTAAGCTGTAAAAATCATAATTGTACTAGAATTTGTCATTCAGATGATTGTGGTGAATGTAAATTATCAATTACAAATATAACTTCATGTCCTTGTGGTAAAATACCGATTATAAAAGGACAACGTTTAACTTGTTTAGATCCTATACCATTATGTGGTGGAATTTGTAAACGTATACTTAAGTGTGGTCCATCTGGACAACCCCATTCTTGCGCAAGTCGTTGCCATCTTGGTAATTGTCCACCATGCAATAAAGAGACTGGAATTAAGTGTCGTTGTGGACTAATGGATCAAATGATAAAATGTCGTCAATTACAAACAAGAGCTGATGATGCCAGATGTAAAAAGCGGTGTACAAAAAAACGTAATTGTGGTAAACATAAATGTAATCAAGAGTGTTGTATTGATGTTGATCATATATGTCCAATGCCTTGTACATTTACATTATCTTGTGgcAAACATAAATGCGATCAAACATGTCATAAAGGACGTTGTATTCCATGTTATCGTACATCATTTGAAGAATTATACTGTGAATGTGGTGCAGAAGTTATATATCCACCAGTGCCTTGTGGAACAAAACGTCCAGAATGTAATAAACCATGTTCAAGACGTCATAATTGTAATCATGAAGTATTACATAATTGTCATAATCAAACATCATGCCCACCTTGTATGATATTATCAACAATTCCTTGTCATGGTAAACATGAAACTAGGAAAACAATACCATGCAGTCAAGGTGAATTTAGTTGTGGTTTACCATGTAATAAACCATTAGATTGTAAACGTCATAAATGCATAAAACCATGCCATTCTGGTATATgtatgaatgaaaatgaaatatgtAAACAGAATTGTACAAAAATACGTATAAGTTGTTCACATAAATGTAATGCACCATGCCACAATGATGATTGTCCTGATATACCATGTAAAGAAAGTGTTGAAGTAACATGTCAATGTGGTAATCGTAAACAAACACGTTCATGTCATGATTTTGCTAGTGATTATCGTCGTATAGCAACATCACAATTAGCATCATCAATGCAGGAAATGCAACGTGGTAATTCAGTTGAATTGAGTGATATATTGGGAccgattaaaataaataataataaaacattagaTTGTAATGATGATTGTAAAACACTAGAAAGAAATCGTCGTCTTGCTATTGGTTTACAAATACGCAATCCTGATTTATCATCAAAACTTCAGCCACGTTATTCTGATTTCCTGCGTGGATGGGCTAAAAAAGATGCAATCTTTGTACAAAATATTCATGATAAATTAACTGAACTTGTTAAATTGGCAAAAGAAAGTAAACAACGCTCGAGAAGTCATTCTTTCCCAACAATGAATAGGGAAAAGAGACAGgtTGTTCACGAAATGTGCGGAATGTTTGGTGTTGATTCTATCGCATATGATGCTGAACCAAACAGAAATGTTGTTGCAACCGCCTACAAAGAAAAGACATGGATGCCAAGTATGAGTCTATCTGAAGTGCTTAAACGAGAAGTTGGTCAACGCAGAATTCCAGTACCCAATATGAACGCCTGGGGTATGAAGAGATAA
- Protein Sequence
- MEHRNPNENGYRDNYTNFDQFLNQYNMASNTNDIQYLPYDYQTSGSETYGYGYSNEINNFQVENSNLLPTAAEFVPRWQDQKYQEQKEPIPSLVTYEVPNDIRSYEYYNGNLDQLSYDNGSQLEFANLGASEININANTNKNVSTEKNKNQQQQQHQQNRGSTGKWGSHSNKFNQIQTNKNNLGQKNYNNRSDGQRSSSSVVYERGRNRYEDESQASNNRRRHNRYDERSQQQQQQPQQGNGGGGGAASSSVGGRYRNEDRSNGKWDSDRNYRNNYKDSRNYDRNEWRSATHDDNNEQKYNKESTARNFNLTTKNHSEYKTDTKNLKTETKIDDEKFTQREKLSREIDGGNLECLVCCENIKPFQSTWSCNNCFHIIHLNCTIKWAASSKSDEGWRCPACQNVTKRIPKDYYCFCGKTKNPHYNRNDMAHTCGELCERMDGCIHPCTQLCHPGPCPPCQTTVTRYCGCNKTSRIMQCNQKIDVKCDLTCDKLLNCNLHQCIEKCHQNACTDCEKKVQHKCYCGKEEKNVDCNTENNNNLLYSCNKVCNKLLSCKNHNCTRICHSDDCGECKLSITNITSCPCGKIPIIKGQRLTCLDPIPLCGGICKRILKCGPSGQPHSCASRCHLGNCPPCNKETGIKCRCGLMDQMIKCRQLQTRADDARCKKRCTKKRNCGKHKCNQECCIDVDHICPMPCTFTLSCGKHKCDQTCHKGRCIPCYRTSFEELYCECGAEVIYPPVPCGTKRPECNKPCSRRHNCNHEVLHNCHNQTSCPPCMILSTIPCHGKHETRKTIPCSQGEFSCGLPCNKPLDCKRHKCIKPCHSGICMNENEICKQNCTKIRISCSHKCNAPCHNDDCPDIPCKESVEVTCQCGNRKQTRSCHDFASDYRRIATSQLASSMQEMQRGNSVELSDILGPIKINNNKTLDCNDDCKTLERNRRLAIGLQIRNPDLSSKLQPRYSDFLRGWAKKDAIFVQNIHDKLTELVKLAKESKQRSRSHSFPTMNREKRQVVHEMCGMFGVDSIAYDAEPNRNVVATAYKEKTWMPSMSLSEVLKREVGQRRIPVPNMNAWGMKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -