Priv015747.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- nfxl1
- Assembly
- GCA_963082725.1
- Location
- OY720155.1:8882802-8885902[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.88 9.6e+03 -3.0 1.4 14 19 179 184 179 184 0.86 2 17 0.1 1.1e+03 0.0 1.6 4 10 215 221 214 221 0.96 3 17 2.2e-07 0.0024 18.1 13.4 1 19 229 246 229 246 0.99 4 17 2 2.2e+04 -4.8 1.6 5 10 271 276 271 276 0.90 5 17 4.2e-05 0.46 10.8 14.5 1 19 282 301 282 301 0.96 6 17 0.87 9.5e+03 -3.0 0.7 5 10 325 330 325 330 0.92 7 17 1.3e-07 0.0015 18.8 11.5 1 19 336 354 336 354 0.99 8 17 7.5e-09 8.2e-05 22.8 9.9 1 18 389 406 389 407 0.98 9 17 0.0097 1.1e+02 3.3 13.4 3 18 443 458 441 459 0.91 10 17 9e-10 9.8e-06 25.8 11.2 1 19 468 486 468 486 0.97 11 17 0.22 2.5e+03 -1.1 4.3 10 18 533 541 530 542 0.90 12 17 0.016 1.7e+02 2.6 4.7 4 12 556 564 545 564 0.87 13 17 1.3 1.4e+04 -3.5 0.7 6 10 625 629 624 629 0.88 14 17 9.4e-07 0.01 16.1 7.5 1 12 635 646 635 646 0.97 15 17 1.1 1.2e+04 -3.3 1.3 15 18 659 662 658 663 0.82 16 17 0.058 6.4e+02 0.8 12.9 3 18 675 690 674 691 0.89 17 17 4.3e-07 0.0047 17.2 10.2 1 16 745 759 745 765 0.93
Sequence Information
- Coding Sequence
- ATGCACggtagaaataataataatccttGGAATAAAAACAATGGCACTAAAAAGTCGAATTTATCCCAAAATGTTGGGACCTCAAAACAGCAGCCTGAAGAAAAAGTtgatttgaagaaaataacagaaaaaaaatttaaagacgCCTATAATAAGCATGTTGAAGCAGCTAAGAAACAcatagaaaattatgaatccaGTTCAGATGAAGAAGAGTTGGCTGGTAATGACATTTTAAAATGTGTTTTTAAGAACTATGATGGAGATAAAAAAGATTTAGTTAAAACACAAGAATTTCTTGAAAATACTTTTCAATGTGGTACCgcaatttgtttaatttgcATTGGAAGCGTCAAACGTACTGATTCgATTTGGTCATGTAAGAATTgttataatttctatcatcTGCAATGTCTTCAACGTTGGGCGAATGATACAATTTCACATAAACAAATGCACCAAGATGGTGAACAGGGATACTATAACAATTTAGGGGAATACATACTccctaaacaaaaaaataccgTGTTCTGGGACTGTCCGAAATGCCGGCATAAATATTCCAAAGATgaaATTCCTCACCACTACGAATGCTTCTGTCAGAAGGAAAGAAATCCAGAGTATCATCCATGGATATTACCTCATTCTTGTTCacaaaaatgtgaaaaacTACTTCAACCACGATGTGGCCACAAATGTGTTTTACTTTGTCATCCAGGATTTTGTCCGCCTTGTCCCCAAGTAATTTCTGTTTCATGCAAATGTAATCAATCAAATCCAAAAATGATTCGGTGTTCACAAAACACTTGGACCTGTTTACAAAAAtgTCAACAAAAATTATCCTGTGGTATACATAAATGTGGTCTTCCATGTCATTCAAAAGAAGAGTGCCCACCTTGCAAAAAACGTAGccaacaaaaatgtttatgcGGAAAcaaaactgaagaaaaaaattgtacacaaaCAAAGTGGCGTTGTAATAAAatttgcgGTAAACAATTTTCTTGTGGAATTCATACTTGTGAAGTAAAATGTCATGCTTCCGATTGTGGAGAATGTCCATTAGGTAAACCAAGATCATGCCCATGTGGAAAGCAAATATCTGTTGCACCTTGTACTGAACAAATTGAGTCATGTGGTGATACATGTAATAAAGTTTTGCCATGTGGAATTCATCGTTGTTTAGAACGTTGTCATAAAGGTGATTGTAGTCAATGTatggaaattattgaaaagaaGTGTCGTTGCGGATTAACTTCAAAGGAATTACGTTGTTCAAAACAATTTACTTGcgaaataaaatgtaaacaaatacGCGAATGTAAAAAACATGCTTGTAATCGTAAATGTTGTGACAATCAATGTCCTTCATGTGATAAAATTTGTGGACAAAACCTATCATGTGGAAAACATAAATGTAAATCATTATGCCATACTGGCTTATGTTATCCTTGCACATTAAAATCACAAGTTAAATGCCGTTGTGGGAATACTTCTTTGTCGGTTCTTTGCGGCCGTGAGAGGAAAACTAAACCCCCCAAATGTATGTTACCCTGCAAaatCCCACCAAAATGTCATCACGATAACCCTCATAGATGTCATTTAGATGATTGTCCAATTTGCGTACAAATGTGCGGCTTAAAAAATGATGTAACAAATTGTGATCATCCCTGTCAATCACGTTGTCATGATGCTGTAAAAGTTCTTATTactgataaaaattttaaggcCGCTGGTCCATGGGAATTACGGCAAGAAATTtatgaagaaagaaaattgccTCATCCTCAATGTGCGATTAAAGTTCCAGTTTCATGCTTGGGTGGTCATGAAATATATAATTGGCCATGTTATAATTCTAAACCTACTTCTTGTACACGACTATGCAATCGACAATTGAAATGTGGTAATCATACATGTGAGCGTATTTGCCATAAAGTAAACAATTTGGAATCAGTGAATGAAGAAGAATCGTGTGCTCCATGTGAGAGAGGATGTAATATTTCACGTCCAAAAGGTTGTACTCACCCATGTAAAAGAGCTTGCCATCCAAAACCATGTCTGTTATGTACGGttaatataaaatctttttgtCATTGTGGATTAAcacaaacaaattataaatgtgCTGACTTTTATAAGGAAGGTTCAACTGaagaagatttaaaaaaaattgctgaAGCAAAAGAAAAGGTTTTAAGTTGTGGAGATCGctgtataaaaaattataatTGTGGTCATCGGTGTACATCTATTTGTCATTCTGGACGTTGTCCAAATTCAGAACTTTGTAAAAAGAAGGTAAAAGTTTCGTGTCCATGTAAAACACGGAAAGTTGAAATTCCATGTGATAAAATACGTGCTGGTAATAATATTGTGAAATGTGATGTTTTATGTGAATCAAAGAAACaggaacaaaaagaaataatggaTAAAAAAGCACTAGAATTAGAGAAAATCCAAATGGAAAAAAATCGTATTGAATTGGAACTTTTTGACAAGAAatttggaaagaaaaaatataaagaaagaaaacaggatttaattgaagaaaaaccAGATAAAACTTGGATGTATATGGTTGGTGGTGCTGGAagtgtaattataatttctcttttaatatatttttttattttaaattaa
- Protein Sequence
- MHGRNNNNPWNKNNGTKKSNLSQNVGTSKQQPEEKVDLKKITEKKFKDAYNKHVEAAKKHIENYESSSDEEELAGNDILKCVFKNYDGDKKDLVKTQEFLENTFQCGTAICLICIGSVKRTDSIWSCKNCYNFYHLQCLQRWANDTISHKQMHQDGEQGYYNNLGEYILPKQKNTVFWDCPKCRHKYSKDEIPHHYECFCQKERNPEYHPWILPHSCSQKCEKLLQPRCGHKCVLLCHPGFCPPCPQVISVSCKCNQSNPKMIRCSQNTWTCLQKCQQKLSCGIHKCGLPCHSKEECPPCKKRSQQKCLCGNKTEEKNCTQTKWRCNKICGKQFSCGIHTCEVKCHASDCGECPLGKPRSCPCGKQISVAPCTEQIESCGDTCNKVLPCGIHRCLERCHKGDCSQCMEIIEKKCRCGLTSKELRCSKQFTCEIKCKQIRECKKHACNRKCCDNQCPSCDKICGQNLSCGKHKCKSLCHTGLCYPCTLKSQVKCRCGNTSLSVLCGRERKTKPPKCMLPCKIPPKCHHDNPHRCHLDDCPICVQMCGLKNDVTNCDHPCQSRCHDAVKVLITDKNFKAAGPWELRQEIYEERKLPHPQCAIKVPVSCLGGHEIYNWPCYNSKPTSCTRLCNRQLKCGNHTCERICHKVNNLESVNEEESCAPCERGCNISRPKGCTHPCKRACHPKPCLLCTVNIKSFCHCGLTQTNYKCADFYKEGSTEEDLKKIAEAKEKVLSCGDRCIKNYNCGHRCTSICHSGRCPNSELCKKKVKVSCPCKTRKVEIPCDKIRAGNNIVKCDVLCESKKQEQKEIMDKKALELEKIQMEKNRIELELFDKKFGKKKYKERKQDLIEEKPDKTWMYMVGGAGSVIIISLLIYFFILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -