Priv014680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
-
Assembly
GCA_963082725.1
Location
OY720154.1:36599705-36602943[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.035 1.9 9.4 3.9 1 23 28 51 28 51 0.94
2 16 3.9 2.2e+02 2.9 2.1 2 14 130 142 129 151 0.68
3 16 0.72 40 5.2 0.7 1 23 187 209 187 209 0.88
4 16 0.00082 0.046 14.5 0.6 1 23 215 237 215 237 0.94
5 16 2.5e-05 0.0014 19.3 3.1 1 23 243 265 243 265 0.98
6 16 0.4 22 6.0 1.2 2 23 275 297 275 297 0.95
7 16 0.00092 0.052 14.3 1.0 1 23 318 340 318 340 0.96
8 16 0.22 12 6.9 3.3 1 23 347 369 347 369 0.98
9 16 0.025 1.4 9.8 3.8 1 23 381 406 381 407 0.94
10 16 0.00025 0.014 16.1 1.6 2 23 414 436 414 436 0.96
11 16 0.0001 0.0056 17.4 2.1 2 23 442 464 441 464 0.94
12 16 0.00034 0.019 15.7 1.6 2 23 480 502 479 502 0.96
13 16 0.0012 0.066 14.0 3.0 1 23 508 530 508 530 0.98
14 16 0.48 27 5.8 2.3 1 23 536 558 536 558 0.98
15 16 9.1e-05 0.0051 17.5 1.8 1 23 564 588 564 588 0.98
16 16 0.16 8.9 7.3 0.2 1 23 594 619 594 619 0.93

Sequence Information

Coding Sequence
ATGGAAGTATTtaattatacagaaaaattaGATTTAGAGATGCTCAAAAGGAATAATTCTATTGAAGAATTTGTGGATGAATTTTCTTGTTGTTTATGTGGAACTGAATTTAATAGTCACAACAGTCTTATGGAACACACACTTCAGAATCATtataatgataaattttattcatgtGTTGTTGATGAAAATTGTCCAAAATTCATTTCTATAATAAAGTTACATGAACATATTTTAAGAAGCCACTATGATGTTCCATTAGAAGATAtgttaatacaaaatttaaatgaaattacatGTTTAACATGTGAAGCAAAATTTCCGGATAAACTTGTTTTTGGAAAACATATGTGTTTTTCATCAATGCTTCAACCATATAATAAGTTGGAATGTAGTCTTTGTACTCAAAAATTTACATCACAAAATAGaatgTTATTTCATCATCAATTTCATAGAAGAAATCAACGAccaaaaatatgtattatttgtgtcaaattatttataaatgaaaatgatttttacaatcatgttatgttttttcacgaaaaggaaaaaatttattattgtatatcgtgtgataaaaattttttaatagaaaataatttaaaaaagcaTGAACGAATACATTCTATTGAAAGAAATTATGAATGTAatgtttgtaataaattatttataaataaacaaacattaaatGAACATTCTGTATcacatttagaaaataaaccATTCCAATGTCATATATGCCCGAAAACATTTAATCGTGGTTATCGTTTAAGGAAACATTTAATATCACATGAAAGGCCAACACCCGATCTTATACCAGTTTGTTGTATTTGTCAATCGGTATTTGCttcagaagaaaaatttaatgaacattttatgaaagaacatgaacatttaattgatgaatCACAAACACTTCGTTTCAAAAATTTCGTAACAGACAAAGTTTTCTGCTGTGAATATTGTGAAAGTGCTTATACACAACCAagtgaattattaaaacataaaattgtacataaaaacgaagaaaacCCATTCAAATGTAATATTTGTGCTTATCGCTGTGACGCTTttagtaaattaaaaacacaTAGAATTTCTCATGGGCCAAATTATGTATTCCCAGTTCAGCGACATTATATGTGTTATTTTGAGGAATGCTTACGGTCTTTTATTCATTGGCCAGATTTGCATTCTCATTTAAAAACCATTCATCATATTTCTTCTACTAGTAACACATGCAATTTGTGTAATAAAACATTCCGAACCATttggAGCCTTACCTACCATAGAAAAAGTGTACattttaagaaatatataaaatgtacttTATGTAATGAAAGttttaacacaaaaagtaTGCTtctaaaacataaaaaagagaaGCATATTgaatccATAAAACTAGTAACTAAAGAAAAAACCTCCAAAATTACATGTAATTTATGTTCGAAAGTATATAGCAATGAATATTCATATAGAGTTCATCATAGaTCAGTACATGAAAAAATAGTAAATCACAAATGTGATGTATGTTTTAAAggattttacaatttaaatgataaaattaatcacatgagaacacacacacatgaaaAACCGTATACATGTTCAGCATGTCCACATAAATGTCGTACTGCTTCGATATTAATAGAGCATTTTAggATTCATACTAATGAGAGACCATTTACGTGTCCACATATTGGATGTGGCCTTTCATTTAAACGTTCATACGCAATGAAAAATCATTATAAACTTCACACTggagaaaaaaaTTTCATTTGTAGTGATGCTAATTGTATAAAAGCTTACAGAAGTTTAGCTGAATTAAATACTCATGTTAAGAAAAAACATATGGCACATCAAAAACCATTAAGAAAAAGtgatgaaaatacaaaaagtttaCTTAAATTACAAACAGATAGTATGACATCTGAAAATgAGCTTTCATCGACATcatcaaaaattaatcaacCAACTGATAATAAAGAAGGTGATCATAATTTTCTTCACACATCATTAATAAAAGACATTGATATTgatgatgaaataattttgGAATTAGAAGATGACAATTTAACAAATTCGAGTAATATTGagacaattgaatttttggaGACGAATTCAACTGATTGTGTAAATGAAGAACATATAGAAGATGGAGACGAGAGTCTAATAAATCTTGTTTCTGTTGGTAAAAGGgatattttaattgatgatACAGATACAATAGATTTTGATACACAAACGAatgatttaattgttttaaattcaacaacaGTGGCAAATCTGGAAACATCTTTAAATGGTGTTATTGTGCAAATTGATCATAGTAAAAAACAACTACTTTTAAGTGATGGAcgtattataaatttataa
Protein Sequence
MEVFNYTEKLDLEMLKRNNSIEEFVDEFSCCLCGTEFNSHNSLMEHTLQNHYNDKFYSCVVDENCPKFISIIKLHEHILRSHYDVPLEDMLIQNLNEITCLTCEAKFPDKLVFGKHMCFSSMLQPYNKLECSLCTQKFTSQNRMLFHHQFHRRNQRPKICIICVKLFINENDFYNHVMFFHEKEKIYYCISCDKNFLIENNLKKHERIHSIERNYECNVCNKLFINKQTLNEHSVSHLENKPFQCHICPKTFNRGYRLRKHLISHERPTPDLIPVCCICQSVFASEEKFNEHFMKEHEHLIDESQTLRFKNFVTDKVFCCEYCESAYTQPSELLKHKIVHKNEENPFKCNICAYRCDAFSKLKTHRISHGPNYVFPVQRHYMCYFEECLRSFIHWPDLHSHLKTIHHISSTSNTCNLCNKTFRTIWSLTYHRKSVHFKKYIKCTLCNESFNTKSMLLKHKKEKHIESIKLVTKEKTSKITCNLCSKVYSNEYSYRVHHRSVHEKIVNHKCDVCFKGFYNLNDKINHMRTHTHEKPYTCSACPHKCRTASILIEHFRIHTNERPFTCPHIGCGLSFKRSYAMKNHYKLHTGEKNFICSDANCIKAYRSLAELNTHVKKKHMAHQKPLRKSDENTKSLLKLQTDSMTSENELSSTSSKINQPTDNKEGDHNFLHTSLIKDIDIDDEIILELEDDNLTNSSNIETIEFLETNSTDCVNEEHIEDGDESLINLVSVGKRDILIDDTDTIDFDTQTNDLIVLNSTTVANLETSLNGVIVQIDHSKKQLLLSDGRIINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-