Priv018136.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- NRARP
- Assembly
- GCA_963082725.1
- Location
- OY720155.1:36159240-36166387[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1 59 4.7 2.5 2 23 1442 1464 1441 1464 0.95 2 9 0.00032 0.018 15.8 2.5 1 23 1496 1518 1496 1518 0.98 3 9 0.002 0.11 13.3 2.8 1 23 1526 1548 1526 1548 0.97 4 9 0.001 0.058 14.1 0.9 1 23 1556 1579 1556 1579 0.94 5 9 6.4e-06 0.00036 21.1 0.3 1 23 1585 1607 1585 1607 0.98 6 9 0.00057 0.032 15.0 0.3 2 23 1615 1636 1614 1636 0.97 7 9 0.0019 0.11 13.3 0.8 1 23 1641 1664 1641 1664 0.96 8 9 0.00033 0.018 15.7 2.8 1 23 1669 1691 1669 1691 0.97 9 9 0.0031 0.17 12.7 4.2 1 23 1697 1720 1697 1720 0.98
Sequence Information
- Coding Sequence
- ATGAAAGTTGCGTTTACAAGagatgaatataaattttgtattaagaATTTTCCATATCAAAAGAGTTCATTACCAACTGATTACGTTACtggtgaagaaattcaaggctttttgaataaattagtttttgcTGTAAATCAACCAAATGAAGTTGAGTTGGGTAATATCATTGCAAACGAGATTTCAAATAATCCTATCGTTAATGAATTTCTAATGAGTAAGtttcaaatttatatgttAGATTGGCTGAAACAAGAGAAGGCCAAACTTCTTACAGAAAAAGATGCAAAAAAGTTCTTTGAAGATACAAGTTCCAACTTACGGATGAGTTACTATACTGAGGATTTTCTTGCAGATATTAAGAAACatggaattaaatttaactcaGATGcaattattgaattgaatacaAATTTCCAAGACTTAGTTGATAATTCGGAGAGacgaattttaaatattattactgAACAAACGGAGTTAATTTCGATAAAACTTTATCAAATCttacaagaaaaaatcaattatagTTACATATTTTTACGTTTGAGTACACTTTTAGAATTAGGGGATGCATTTAGtttacaaaacaataatttattggtTATTGTACTCCAAAACGTAATACAGGATgacttaataaaattgattcataagctaaaatcaattttgaaTGAATATTCTATGGCGAAAATTATTCTCATTGGTTCATCAGCTCTTTTAAATAATGCAGATTTGAGTAATGACAAATATGAGGATAGAAAtctcaatttaattgatcTTACTCTTGAGTCACAGAAAAAAATCCTTGTGGAAGGAATTGTATCATTTCAAGGGCAGGATATAAATTTGGACAAACTACTGAACTGCAAATTATGTAATGCTATCGatggaaatattttatcaaactTAATTCACAAACAGGAAATAAAGATAGGAGCTGAAGTTCCCAATTTAAGTGaggattattatattatgagAAAACTCAAATATTGTATGAATATTAACCCAGATATTCAGAAAGATACTCAAAACTCTtctatatttgaaaattatcaacacttgaaaaataatttaccagACGTACCAGATCATTATCAAGACATAATAATTGTCTGTAACAATTCTAATAATGAGTTTAATGATTTTTGTATCaaatacagtaaaaaaaatattcattggCTCAAGAAGAATAAAGACAAGCTCATATGGAAACAATCTTATGGAGGTAATTTATCAAAGTTGAGagaatttattgataaaagtTCTGTTCAGTACACAGAACCAAAAATTGCTACagatataaaagaaaaagtgatCGTTATTGTTGCTGAGCCTGGCATGGGTAAATCTACTTTACTCACACATTTAGCATTGCAAACTAAGAAATCAGAACCCACTTTAtgtattttgaaaataaatttaattgataatgcTGAAACATTTCAATCGTGGATCAAAAAAAGGACGCTTACAGAATCTGATATTAATGACTTTTTGTATTCTTGTTATTTAGAAAGAACAAATGAAGGACCAATAAAAGCATTAGAGAAAACAGTTTTCGATTATTGTTATCAAGAGGGTAAACTGATTGTTATGTTCGACGCGTTTGATGAAATAACTccgaattataaaaatgttgtaattaaaatattaaaagttttacaaaAGACTACAATTGGAGGGTTGTGGATAACCACACGCCCTTATAATATCAAAAGcgaaatagaaaatgttttaaatacattttcgTATAGTCTTGAACCCATGTctgaagaaaatcaaatttctttcttaaaatcTTATTGGGCACAAAACTTGAAAGcgattattaaagaatttcttgAATGGTTCTCCAAAAtaacaaatgataaaaattgtgACTTTGTTACTAACCCTTTACAACTGCGAATGATTGCTGAAATTTTTCAAAGTAAATTTGAAGATTTGTTatctaaaaattataaacaaatgtTCGGAGGAAATCTTAGTTTACTGACTTTATATGAAAAGTTTATTGATCACAAATTTTACAAAGTTTTaatgcaagaaaaaaaatcgggAATAAATAAAGCTGACCCACATATGACGGAAATGATTGAGAACGCGCGtacacattttatttcaaatcataaaaaattagcTTTGTTGTCCCTGTTTGGAACggatgaaattgaaattttgagCATTGATATTGGAAATTCAATTTTAGATATTAAACTGGGGAAGGAAAAGGCAGGAATTATTGATCGAGTGATTAATGACaaaccaatttttattcacaaatCATATGCTGAATATTTTGCTGCACTTTGGATGGCTGATAATTGGAATAAAGATAAAGTTAagatttttcttagaaaacatatttttaaagaagaaaattatatgattCGAAAATTTTTCGATATTTTGTTAGCTTCTGAAAACAATCCAGACGTTATTGAGGATGGGTCTGAAAGGGATTATGAAAGTGAGAACAGCGAACAATTTCTAAAGGATAGTGTTCCAATTctaaatagtaaatataaattacatgcagctattttgaataataatgttgaaagtatcattaaaatattggaatctgaaaatttaattgagaTTATTCGTAGTCTTGATAAAGGAGGCCGATCTGCTTTACACTTGATTGCATCCTATAATTTTACTACAATttggaatttaataaattcagaacaaacaaaaattattattaataacaaaGATCAAATATTTGGTTTTTCTCCTCTATTGTATGCTGAAAAATGTGGTAGCTGGAATATTACTGATTCACTTTTAGAAGAAGGGGCTAATAGTGATGACATGTATAAAGAAATAGACAACATTAATGAAGTTTATAAGGGTCCTAATAATCCATATTCTCAGTCTAATATGACATTATTACATATCACTGCTGAACGAGGCTTATTAAATCTTACAAAAGTTTTACTAGAAAAAGGCAGTGATGTTAAGGCTATAAATAAATTCGGTGCTACTGCTCTACATTTAGCAGCTATAAGAGGTAAAACAGAAAttgttaaacttttattaaaatcagtAGAAAAATCAACACCCGATAAATTATTCGAgtttttaaaaggaaaaaaccaATTCAATTATACTGCTCTGCATTTATCTGCTCTTTATGGAAAAACAGaagtaattaaatatttaataaatttagtcGAAACGAAATTTCCAGAAAGAATTTTGGAATTGCTAaacatgaaacaaaaaaacggtTACACGGCTCTACATATAGCAGCTCAAAAAGGTAAAACTGAAATTGttgaacttttaataaaatctgtagaaaaatcaaaaccTGATCAATTGTGGGAGTTCGTTAATGAAGAAACCATTCATGAAGGTAATGCATTATACAATGCTCTTGGCTTTAGACAACCAGATATTgttaaaattcttataaacTACAAAGGTAGTGTTGTTGCAAGAAATAATCATGATACTATATTGCATCAGGCAGTAAAGATGAATAATGAAGAAATACtgcaattaattttaaatgaaattaaaagaacaGAACCAATTATGGATCCATTTATAAATGCCAATGATAATGAAGGTGATACTCCATTAATGTGGGCTGCTGAAAATGGACATCTGCAAATGGTTAAAATGTTACTAGAATATGGAGCAAACTTAGATATGCAGAATAATGATGGAGAAACAGCATTGCATTGGGCTACTAAGGGAaAAACTGACGATAGTATATTAACCCAAGAAAtacaattagaaaatataaaagaattaggTTTGTTAAAAGTAGAGGAACATGATCAACAACAAGCCATAATCCCTTTTGATCCATTAGACTGtcttaattcaattattgatGAAGTAATTCCAATTGaaagtgttattattaaatcagAAAATGATTGTATAAAGTCTGAAAATGATGAGGAATATCTATTTGTATCAGATGATGATATACCATTAATTAAAAGAGCTTCAATTGTTCcgagaacaaaaagaaaaaaaaatgaTCAATTGGAAAGTGAcgaaagtaaaataataaatcaaaagcAAAATGATAACGAAGAAGACGAAGATGATGGTGATATTTGTGATTTATCTAAAATCAATGAATCAGTTTCAAATAATATACGAAAAACTAAACGACCGGTTACAACAGAATCAAAAGAATctcaatcaaaaaataatttttgtaaaataaataagaagaatgaccttaataatgataatgaagATAATgagaatgatgatgatgatgatgacgaatCACCTAGATTAACACATCGAATAAAATTAGATGGACCAATACgtgaattttttgatttaaaatgtttaaaatgtaacaaactttttttaacatttacaaCAATGAAAAAACATATGGAAAAAATACATAATCAACAATGTTTTGTTACATGTTGTAATCGTAAATTGTATAGACGGGAAGCAATTATGGAACACATTAGTTATCATTTAAATCCAAAACAATTTGtatGTCCTCAATGTGATCAAAAttgtaaaagtaaaataacattaaaaattcatatgaAACAGCATTTACCAATTGAAGAACGTCCATTTCATTGTGATAAATGTAATCAAGGATTTGTATTAAAATCACAACTTCAAAGTCATGAAAAATCACATTACACAGatgaacaaaagaaatttgtttGTGAGGAATGTGGTAAAgcttttgcatttaaatttgtattagaaaaacataaactacatatacacatacgtgataaaaattttatgtgtgAAATATGTGCACGTTCATTTGTTGATAAAGTTAATTTAACAGCACATAAAAGAACACATGATATAAATATACCACGTTTACAATGTCCATTCTGTGAAGctagattaaaaaataaagtaacattaaaaatacatATGCGTGTACATAATCCATCTGTACATACATgtaatttatgtaataaaatattagcaACAAAAAATGCATTAATGAATCATATACAATATGTTCAtagtgaaaaaaaacataaatgtaATGTTTGTGATAAAACATTTAAGAAGGCATTAACACTAAAGgAACACACCAGTATACATACTGGTGAAGTTTTATACAAATGTCAACattgtacaaaaaattttaatgcaaaAGCAAATATGTAttcacatataaaaaaaatgcattataCAGAATGGGCAGAagctaaaaaattaaaatggttAAATGGTTcctaa
- Protein Sequence
- MKVAFTRDEYKFCIKNFPYQKSSLPTDYVTGEEIQGFLNKLVFAVNQPNEVELGNIIANEISNNPIVNEFLMSKFQIYMLDWLKQEKAKLLTEKDAKKFFEDTSSNLRMSYYTEDFLADIKKHGIKFNSDAIIELNTNFQDLVDNSERRILNIITEQTELISIKLYQILQEKINYSYIFLRLSTLLELGDAFSLQNNNLLVIVLQNVIQDDLIKLIHKLKSILNEYSMAKIILIGSSALLNNADLSNDKYEDRNLNLIDLTLESQKKILVEGIVSFQGQDINLDKLLNCKLCNAIDGNILSNLIHKQEIKIGAEVPNLSEDYYIMRKLKYCMNINPDIQKDTQNSSIFENYQHLKNNLPDVPDHYQDIIIVCNNSNNEFNDFCIKYSKKNIHWLKKNKDKLIWKQSYGGNLSKLREFIDKSSVQYTEPKIATDIKEKVIVIVAEPGMGKSTLLTHLALQTKKSEPTLCILKINLIDNAETFQSWIKKRTLTESDINDFLYSCYLERTNEGPIKALEKTVFDYCYQEGKLIVMFDAFDEITPNYKNVVIKILKVLQKTTIGGLWITTRPYNIKSEIENVLNTFSYSLEPMSEENQISFLKSYWAQNLKAIIKEFLEWFSKITNDKNCDFVTNPLQLRMIAEIFQSKFEDLLSKNYKQMFGGNLSLLTLYEKFIDHKFYKVLMQEKKSGINKADPHMTEMIENARTHFISNHKKLALLSLFGTDEIEILSIDIGNSILDIKLGKEKAGIIDRVINDKPIFIHKSYAEYFAALWMADNWNKDKVKIFLRKHIFKEENYMIRKFFDILLASENNPDVIEDGSERDYESENSEQFLKDSVPILNSKYKLHAAILNNNVESIIKILESENLIEIIRSLDKGGRSALHLIASYNFTTIWNLINSEQTKIIINNKDQIFGFSPLLYAEKCGSWNITDSLLEEGANSDDMYKEIDNINEVYKGPNNPYSQSNMTLLHITAERGLLNLTKVLLEKGSDVKAINKFGATALHLAAIRGKTEIVKLLLKSVEKSTPDKLFEFLKGKNQFNYTALHLSALYGKTEVIKYLINLVETKFPERILELLNMKQKNGYTALHIAAQKGKTEIVELLIKSVEKSKPDQLWEFVNEETIHEGNALYNALGFRQPDIVKILINYKGSVVARNNHDTILHQAVKMNNEEILQLILNEIKRTEPIMDPFINANDNEGDTPLMWAAENGHLQMVKMLLEYGANLDMQNNDGETALHWATKGKTDDSILTQEIQLENIKELGLLKVEEHDQQQAIIPFDPLDCLNSIIDEVIPIESVIIKSENDCIKSENDEEYLFVSDDDIPLIKRASIVPRTKRKKNDQLESDESKIINQKQNDNEEDEDDGDICDLSKINESVSNNIRKTKRPVTTESKESQSKNNFCKINKKNDLNNDNEDNENDDDDDDESPRLTHRIKLDGPIREFFDLKCLKCNKLFLTFTTMKKHMEKIHNQQCFVTCCNRKLYRREAIMEHISYHLNPKQFVCPQCDQNCKSKITLKIHMKQHLPIEERPFHCDKCNQGFVLKSQLQSHEKSHYTDEQKKFVCEECGKAFAFKFVLEKHKLHIHIRDKNFMCEICARSFVDKVNLTAHKRTHDINIPRLQCPFCEARLKNKVTLKIHMRVHNPSVHTCNLCNKILATKNALMNHIQYVHSEKKHKCNVCDKTFKKALTLKEHTSIHTGEVLYKCQHCTKNFNAKANMYSHIKKMHYTEWAEAKKLKWLNGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -