Priv008489.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- Znf711
- Assembly
- GCA_963082725.1
- Location
- OY720153.1:1232119-1237019[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.36 20 6.2 2.1 1 23 1164 1186 1164 1186 0.97 2 12 0.00018 0.01 16.6 2.4 2 23 1189 1210 1189 1210 0.97 3 12 0.023 1.3 9.9 0.9 6 23 1220 1237 1218 1237 0.97 4 12 0.00015 0.0084 16.8 2.9 3 23 1245 1265 1244 1266 0.96 5 12 0.41 23 6.0 1.6 5 23 1279 1297 1276 1297 0.95 6 12 0.00015 0.0086 16.8 2.2 3 23 1304 1325 1304 1325 0.98 7 12 0.33 18 6.3 0.5 2 23 1338 1358 1337 1358 0.96 8 12 4.4e-06 0.00024 21.6 1.1 1 20 1364 1383 1364 1386 0.95 9 12 0.00087 0.049 14.4 0.6 1 23 1394 1416 1394 1416 0.98 10 12 0.00042 0.023 15.4 4.5 1 23 1422 1444 1422 1444 0.97 11 12 3.2e-05 0.0018 18.9 4.5 1 23 1450 1472 1450 1472 0.98 12 12 0.0025 0.14 13.0 4.5 1 23 1478 1500 1478 1501 0.96
Sequence Information
- Coding Sequence
- atgcATAACCAAGTACAATGTCCAGTTTGTACATTATATCTTCATGCAGGCATGACCTTAGAACAGCATTTGGAAACACATCCGAAGGAGCAGGTCATAAAAGCTTTAGTTGCATTGACAGTTCAAAATAATTCaactttaattaatcaaacaacaaatgaattttcatATGCAATTAATGGACAAAATCGATTAGATTCCCAAGTTGGTTATATACAACatccacaacaacaacaaaatttggTAATTGTTAAAAGCACAGGTAGCACACAATATTTTCAAAGAAGACGTACAGCTTTGCTTCAAAATAATGACTCTTCAGAATATTTACCAATAACAAATGTAAGCTCTATAAAGAATACTGGTCAAAATGTTCATGTTGTAACAGGCACACAATATCCATTTATTTCAACACATATGTCATCATCGACTTTAACTTCTACAGGATcaaattatgataattttgAATTACAGTCACCGAGTTTTTctggtaattatataaataaaccaTCAGATTAtgataatgaaaatcaaaacataaataattatgacGAATCTGACCCATcaacaaataatgaaaatgttgaAGTTGAAGAACAGTTTGAAAACAAAGAgaatttagaagaaaatgaagtaGACTGTTCTAACGAGGAGGCTTTAAATAACTACGAATTTGATGAGGATGATAATCCTCTGACTAGTAAGCCAGTTGCAGCTAAGTATTATGAAAAAGATAATGGTGATTTTTTACTCCAAGAGAGTCCAAGAGCTTACGTTGAATATACAGAAAAAGAGGATGGTGAATTTGTAGTAACAGAAAAAGTATTATGTACTCCAGTTGGTGTAGTACATTTTAATGAGGATGAAGAAGAACTATTAAGTTTTACATTggatttaaatgaaaaagaacaaCCGGATGGAAAATGTGATGTACAAAACACATCAAatacaaattcaaaaattccTTTAATAACGTGTGGTGGTTCTAATAAAAAGTCACCGTATGGCCTAAAGGTTTTAAGCAATGTTAAAGTAACACCGGATATGCTGTCAACGGGAATGAAAGAGATTATTTTTACTGCCCAAACAAATAGTatattggaaaataaaaaacgagaACTTTTGAATGAAGAAACAACTAATAATGGTAATGCAAGTATTAAAAGTGGTATTGtagaagaaattattttaaaaaatatagatgAATCTAGTTCTATGACTACTAGTGTAATAAGGGCTCACACTTCCGATAATATTAAAACCGAACTTCTTAGTTGTAATGAATCAATTATAGAAAAACGACGAGAATTCCATTCTGAAACTGATGAAAACACTGAAGATGATGAAGTGAATAAAATAACTGCCAGTGCTAGTGTGATTAGATTAGCAAGTCCAAATAATTCTTCatcatcaaaagaaaataatttgacaTTAAATGCTCGACCAATAAAACGGCAACTTTTTAATCGCACACCAAAAAAATTGGTAGTGAAATTTAAGAAACCATTAGTACCAGTAGTTGATTCTGATTATCCCgagaataattttgttgaGATTAATGAGGATGAAATTAGGGAAACAACAAAAGTTAATGAAGTAGATGATGAACATAGATTGATTGAGAATAATactaaaattgaaattgagaaaaaattcGATGATAGTATTTTAGTGAAAAGTTGTTCATCTCAGGGTAATAAAGAGAAACTacgtaaagaaaaatgttataaatataaatcatcaTTTTATGAAGATGAAATGTTAGGTGAAATAACAAGAATTAAAcatcataaaaagaaaaatcatctTTTGGCGCATGAATTTAAATCATCTACATCACCAAAATCACCAAAAggttcaaaaattatttcaattgataatttaaaacagaaaactgTTACTATAACTGAAAATCCTGAATTAGTTTGTTCAACCAAAAGTGTAGCAGACTTATTAATATCTGAAGATCTTATGCCAGAATTATCTAGCAATAGtgtttttgaaacaaaaattgaagatAATATAGAAGAGgctaataattttaatactaCGGAATCAAagcatattttaattaataatatggAAAATAATGAGATTGAATTAAATGTAACAAAACATGATAATGAAAcatttgttttaaatgaaGTTAAACCTAATTTTACTATATTAAATTCTCAAGATGAATCATTATCTAAGACCACATCATCAGTAGAATTTAAATCAGAATATATTGTTCGTCACAATGATTTTCCAGCATGTAGCTCATTAGACCATGGTAATCAAAATTGGAAtcaattttctaatattcCAAGTTCAAGTGACCAAGCatcaaaaatgaatattaataatgttaaAGAACCTGAAGAAACTATAAAATTAGAATCATGGGCTACACAATTTACATCAGCAATTGAAACTGTACAATCACAAACTGATGAATTTCATAGACGTTCACCGGAACCGtcattttcaataaaagaaaacacaaaaatagaGACGATCACCAAACATATGATTCCACCACAATCAACAGATTTAGTCGAAGCAGGACCAAGTCGTCTTGATTATggatttacaaattttttgcaCAACTACAATGATCCTGAAACTGAAAACTTTTTATGTTCTAATGAACGTAGTAGATTTTCAGCTATGGAATTTATGGAAGAAGGTCACACTTGGCGTCACCCTTTTAGTCCACAATATGTACAATTTGAAAATGATCGTAATTCTTATATGGATTTAGATCAAtgtaaaatcaattcaaattataatCGTGCACCATCAACTGAAAGTCTAAATATAAGAACGGATGAAAAAATGCCAGCAAAAGGAGAAATATCTGAACAAGAAAGTAACGGTGAAATTGAAAATGGTCCCTGGAGTCAgcaaTTATATCCTTATCAACAAGAGTCTACACATAAATATCCTAACACATATGATTCAGCTACAAAAGAGGGATGgcatttaaataatgaaactGTTGAACCACATAATCAGAGTTCACTTCAGAATATATCCAAATTctCTGTATTATGTACTGCCAGTAATGACCAAGAAACAAAACCTTTTGATAGTacaatttcaaaaattcaaaaagtaaaaactgATAATACAGTGGACAGAAAGCGTAAAGCTAGATGTTATCGTTGCATTCAATGTCCAGTAGAATTTTCAACACTTAAAgctaaaaaatttcatatacaATCAATGCATGAATCACCATTAATAAAATCACAGGGACCTAGTTGTAATGTAACACCTGATTTAACATCAACTaattgttttacaaaaaatactgaaaccaagattgaaaataaatttgatttaaaacgAACTTTATCAAAGGATAGGTGTTCAATATCCAAGGTAAATAatgttgaaacaaaaaaaccaagTTCAGTGATGGATTATAATGAGTTGAAAAAGGAATTGTCAGAAAATGGTACAATTGTAGAACCAGATTCTAAGATTAAAAAACGTCGAATTTATGTTTGTTCACGATGTAGGGAAGAATTTAACAGCATCAAAACATTCGATCATCATTTATCAATACATCCAGCTGAGTGTCAACAATGTGGACGTCTGTTTAGACACTGGACAAATTTGTCGGTACATTTAAAACGACATCtgggaataaaaaattatgcatGTCGTTGTGGTAAAAGATTTGTTCTCAGGCAAAAACTGGTTGAACATATGAGAATTCACACAGGATCAGCACCTATTTTATGTTCTGATTGTCCACTGAAATTTCGAcgttattcaaatttaatacaaCATCGGAACCGTCATCATTTAAATATAAGACCGGAACAAAAAGATTATGTTTGTCACTGTGGTGAAGTATTTCATACAAAAGCAAAATTTGCTTGGCATAAAGAGATTCATGATAAAAAACCGAAAGGTTGCCCATATTGTCGTGAAAGATTTATACATCAAAACAGTTTAACACGTCACATACGTTTATCACAttcagaaaaatattcattttatcaAAGTCAAGCTATGCGATGTCCAATTTgtaataaactttatttaaaaacaagtATGAAACTTCATAtcaatatacataaaataaagacTGAATTTAAATGCAATATATGTAATAAAGCATTTAGtacaaaatggaatttaaaacaACATCGTTGGATACATGCATGCCGTTCAACAAAAccatttaaatgtaaaatttgtaCAAGTGCATTTATACGTGAAACAGATTATGTAACGCATATGAATATACATAAAGCCATCAAACCATTTACTTGTGATTTTTGTGGATGCCAGTTTagtagaaaatataattggaTAAGACATACAAAAGAACATGAAGCACCTAAAAAACACAAATGCGATGTATGTAATAAATCATTTCATCGTGCTTACTATTTAACTGAGCATTTACGTGTACATTCTGGAGAAAGACCATTCTCATGTAATATATGCGGTAAAACATCTGCCACTAAAACCAATCATAATAAACATATTAAAATACATCATGCAAGAGATCCACTTACAGCTGAAggatag
- Protein Sequence
- MHNQVQCPVCTLYLHAGMTLEQHLETHPKEQVIKALVALTVQNNSTLINQTTNEFSYAINGQNRLDSQVGYIQHPQQQQNLVIVKSTGSTQYFQRRRTALLQNNDSSEYLPITNVSSIKNTGQNVHVVTGTQYPFISTHMSSSTLTSTGSNYDNFELQSPSFSGNYINKPSDYDNENQNINNYDESDPSTNNENVEVEEQFENKENLEENEVDCSNEEALNNYEFDEDDNPLTSKPVAAKYYEKDNGDFLLQESPRAYVEYTEKEDGEFVVTEKVLCTPVGVVHFNEDEEELLSFTLDLNEKEQPDGKCDVQNTSNTNSKIPLITCGGSNKKSPYGLKVLSNVKVTPDMLSTGMKEIIFTAQTNSILENKKRELLNEETTNNGNASIKSGIVEEIILKNIDESSSMTTSVIRAHTSDNIKTELLSCNESIIEKRREFHSETDENTEDDEVNKITASASVIRLASPNNSSSSKENNLTLNARPIKRQLFNRTPKKLVVKFKKPLVPVVDSDYPENNFVEINEDEIRETTKVNEVDDEHRLIENNTKIEIEKKFDDSILVKSCSSQGNKEKLRKEKCYKYKSSFYEDEMLGEITRIKHHKKKNHLLAHEFKSSTSPKSPKGSKIISIDNLKQKTVTITENPELVCSTKSVADLLISEDLMPELSSNSVFETKIEDNIEEANNFNTTESKHILINNMENNEIELNVTKHDNETFVLNEVKPNFTILNSQDESLSKTTSSVEFKSEYIVRHNDFPACSSLDHGNQNWNQFSNIPSSSDQASKMNINNVKEPEETIKLESWATQFTSAIETVQSQTDEFHRRSPEPSFSIKENTKIETITKHMIPPQSTDLVEAGPSRLDYGFTNFLHNYNDPETENFLCSNERSRFSAMEFMEEGHTWRHPFSPQYVQFENDRNSYMDLDQCKINSNYNRAPSTESLNIRTDEKMPAKGEISEQESNGEIENGPWSQQLYPYQQESTHKYPNTYDSATKEGWHLNNETVEPHNQSSLQNISKFSVLCTASNDQETKPFDSTISKIQKVKTDNTVDRKRKARCYRCIQCPVEFSTLKAKKFHIQSMHESPLIKSQGPSCNVTPDLTSTNCFTKNTETKIENKFDLKRTLSKDRCSISKVNNVETKKPSSVMDYNELKKELSENGTIVEPDSKIKKRRIYVCSRCREEFNSIKTFDHHLSIHPAECQQCGRLFRHWTNLSVHLKRHLGIKNYACRCGKRFVLRQKLVEHMRIHTGSAPILCSDCPLKFRRYSNLIQHRNRHHLNIRPEQKDYVCHCGEVFHTKAKFAWHKEIHDKKPKGCPYCRERFIHQNSLTRHIRLSHSEKYSFYQSQAMRCPICNKLYLKTSMKLHINIHKIKTEFKCNICNKAFSTKWNLKQHRWIHACRSTKPFKCKICTSAFIRETDYVTHMNIHKAIKPFTCDFCGCQFSRKYNWIRHTKEHEAPKKHKCDVCNKSFHRAYYLTEHLRVHSGERPFSCNICGKTSATKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -