Basic Information

Insect: Pedicia rivosa
Gene Symbol: L_1
Assembly: GCA_963082725.1
Location: OY720152.1:27995555-28008914[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00043 0.024 15.3 3.6 1 23 119 141 119 141 0.97

2 18 1.5 81 4.3 6.9 1 23 147 169 147 169 0.98

3 18 2.7e-07 1.5e-05 25.5 3.2 1 23 175 197 175 197 0.99

4 18 3e-05 0.0017 19.0 0.2 1 23 203 225 203 225 0.98

5 18 0.11 6 7.8 0.4 1 23 273 297 273 297 0.93

6 18 0.28 16 6.5 1.2 2 23 332 354 331 354 0.95

7 18 0.069 3.8 8.4 0.5 1 23 452 474 452 474 0.96

8 18 1.3 75 4.4 2.4 1 23 482 504 482 504 0.91

9 18 0.0018 0.1 13.4 4.2 1 23 512 536 512 536 0.92

10 18 0.0022 0.12 13.1 0.1 1 23 541 564 541 564 0.97

11 18 4.6 2.5e+02 2.7 2.9 1 23 571 594 571 594 0.96

12 18 0.043 2.4 9.1 0.4 1 15 626 640 626 643 0.88

13 18 0.00066 0.037 14.8 0.4 2 23 932 954 931 954 0.96

14 18 0.0048 0.27 12.1 0.1 1 23 960 982 960 982 0.98

15 18 5.9 3.3e+02 2.4 1.9 2 23 990 1011 990 1011 0.94

16 18 0.041 2.3 9.1 0.2 2 23 1111 1132 1110 1132 0.96

17 18 0.051 2.9 8.8 0.0 1 23 1142 1164 1142 1164 0.96

18 18 2.4 1.3e+02 3.6 1.7 1 23 1171 1193 1171 1193 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00043	0.024	15.3	3.6	1	23	119	141	119	141	0.97
2	18	1.5	81	4.3	6.9	1	23	147	169	147	169	0.98
3	18	2.7e-07	1.5e-05	25.5	3.2	1	23	175	197	175	197	0.99
4	18	3e-05	0.0017	19.0	0.2	1	23	203	225	203	225	0.98
5	18	0.11	6	7.8	0.4	1	23	273	297	273	297	0.93
6	18	0.28	16	6.5	1.2	2	23	332	354	331	354	0.95
7	18	0.069	3.8	8.4	0.5	1	23	452	474	452	474	0.96
8	18	1.3	75	4.4	2.4	1	23	482	504	482	504	0.91
9	18	0.0018	0.1	13.4	4.2	1	23	512	536	512	536	0.92
10	18	0.0022	0.12	13.1	0.1	1	23	541	564	541	564	0.97
11	18	4.6	2.5e+02	2.7	2.9	1	23	571	594	571	594	0.96
12	18	0.043	2.4	9.1	0.4	1	15	626	640	626	643	0.88
13	18	0.00066	0.037	14.8	0.4	2	23	932	954	931	954	0.96
14	18	0.0048	0.27	12.1	0.1	1	23	960	982	960	982	0.98
15	18	5.9	3.3e+02	2.4	1.9	2	23	990	1011	990	1011	0.94
16	18	0.041	2.3	9.1	0.2	2	23	1111	1132	1110	1132	0.96
17	18	0.051	2.9	8.8	0.0	1	23	1142	1164	1142	1164	0.96
18	18	2.4	1.3e+02	3.6	1.7	1	23	1171	1193	1171	1193	0.92

Sequence Information

Coding Sequence: atGGCGTTAAAAATGCTTTATCGTGGTCCAAGTTCTAGGCTGGAAacattaattgaaaaaatacaacaaaataaggAAGTGAATCAAgATGTTTTTTCATCACATACATCCTCTAGTTTTTCACCATCTTTATCAGATGATATACCAACACCAAATTCATTAATACAAATTGagaatgaaaatcaaaatacaacAGTGAAAAAATgtcaagaaaataatgaaaatgaattacaacagcaacaacatcagcaacaacaccagcaacaacaacaacaaaaacaacaacaccaacaaccgAATGGTGgtaaaaaaataggaaaaattgaaaaaataaaaatatcaacgGATGGAAGTTATCATTGtcaattttgtgaaaaaacaTTTCCACGTTTGGGTTATTTGAAAAAACATGAACAGAGTCATGCCGAGCACATGCCATTCAAATGCGAATTCTGTTCTCGTCTTTTCAAACATAAGAGATCACGTGATCGTCATACAAAATTACATACAGGTGATAGACGTTATAAATGTCCACATTGTGAAGCTGCTTTTTCAAGAAGTGATCATCTTAAAATTCATATGAAAACTCATGATAATCAAAAGCCATTTCAATGTACTGTTTGTAATCGTGGTTATAATACAGCAGCAGCATTAACATCACATATgcaaaatcataaaaaacaaGCAACATTAATGGGTAGTCCAAATTTGAGTTATAGTCCGCGTTCAACGGGTTCTGGTTCAAGTAATTCTAGTTTACAAAAACGTAAATATTCACAATTAGAACCAAcattaaatacaatatttcCAACAAGATATTCATGTTTATATTGTACAAAATCAGATTTTATAAATCCAGATCAATTAAGTAATCATGTACAAACAATGCATGGTGGTTTatcacaaacaacaacaacatcaacaacaacaccaacaatatcaataacaaaaaatgaaacaccAATATCAACACCAAGTcctaattttcaattaaattgtgaattttgtACAATGAAATTTTCCTCAAtacaattaatatttcaaCATTTAAAGACAACACATATGGATCGTATTAGTAGTCCAAGTTCATATTTAGAACATTTTAATCGTAGTCTTATGTCTAATTATGAAATGGTTAGTtatagaaattcaattgaattaaaaaaaaatttaaaagatgaTATGATTAAAATTGAAGTTAAAACACCTGATATtgttaaaacaattaatttaccAAATGTTATTGAAGAAGATAGTATTGATATAAAACAAGAGGAAGAACAGGATAGTCCAACTGATTTAATGAATAATGAACAGAATTCATCGCCAACACCACAACAAGGACCAGGAACATTTTTATGTAATCAATGTAATGCAGCATTACCTGATTTTGAAACATTTAGAACACATTTGAAAACACATTTAGATCAAGGGATTGGAAGTTATTTATGTCAACATTGTGGTGTTGCATTTCATGATCAACAAATTTATGAGAAACAtgttttttcacattttcttatAACAAATACAGAATATTGTTGTCCACAAAATTGTAATaagaCATTTACAAAACAAGAAGAATATCAAAAGCATTTATTTGAAACGcatacacaaaatttatttaaatgtgaaTTATGCACAGAAATATTTGATACAAAAGTATCTATACAAGTACATATGGCTGTTGcacatttaaatgaaatacGTTTATATCGTTGTTCAGCATGTATGGAATTATATCGTAATGAACGTGATTTTCGTCATCATGTTAGATCACGTCATATTATATCTGGTGCTGTACAATGTATATTTTGTCGTGCTATATGTTCATCAGAATTAGAAATGCATTTTCATTTAGCTGCACATGCTAGACAATATCGTTGTCCTATTTGTCCAGAATCATTTCATcataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataatagcaataataataataataatattaataataataatattaataataataataatttaaatgaatttcattcacaaataaataacaaaacaccgtatatttttacaaataaattgtacAATACATTACAAATTGATACATTAAGTTCTAAACATCCAAATTTATTACATGGACTTTATGATACAATAAGTAAAACATCACAACGTTATCCAGATACGAATAATGGTTTTTTAAGTccaaataaaagtttattaggAATTTATAATCATCCAGAAATGGTggcaaaattaaataatttctataattcgCATGaaaatcatcaacaacaacaacatcatcatcaacaacaaaatggtGGTATTATTAATAGAGATACTCATAcgaataataacaataataataataataatggaagTAGCAGTAGTAATAATACAACAGAACGTTTTTTTCCAccacaaacaataaatttaaatcgttTTAACATTGGACATACAATTGATACAATagcatcaacaacaacaaccacaacaacatcaacatcatcaacatcattatcacaatcacaattaaatttaggtacatcattaataaaaaatcatttaaataattatggtTTAGAtgatcaattaaatttaaatacaaaaacaataacaacagcaacaacaggaCGTTTTATTGTTGATAAAGGATATAGTTGTGGTATGTGTGATCGTTGTGATTTTAGTACAGAAACAGAAGTTCATACACATAGAAAACTtgttcataatttaaaaacaggTGTTAGCTTAAGATGTGCATACTGTAATGGTGATTTTCGTTCAAGAACTGAACTTGAGAATCATATGAAAATTTCACATAATACATCCGGTAAAcataaatgtttaatttgtGATGAAATATTTCCTTCACCAGCTGTTTTAGCTGAACATAAATTAACTCATTGTAAAGTTGGTCCATCAGGAAGATGTTCACATTGTTTTATAAGTTTAAATgatgttacattttttaaagCACATTTAACTGAACATAATGGTCAAGAAATTCCTGTACAATGTATttgttgtcgtcaaacatTAAATTCAGAATTTGAAATTGGACTTCATGCAAAatTTCATACGAAGTCATcagaaaataaagagaatacATGTGCACTTTGCTTAGAAAATTTACCATCAAATGCTGAAACAAGAGTATGtgaaaattgttataaaaaacataatttaagtCATAAAAATCttcaacatcatcaacatcaacaacaacaacaaaataattcttataCACATCAAACATCAACGACAATACAACAAAATGGTATTGAATCACAAtgtaatttatgtaaaaaagtATTACCATCATCATTGAAACTTCAGGAACATTTAATAGAACATACATTTGCTGGTTGTGAAGATCGTGGttatatttgttatatttgttCATCAGTATTTACAGTACCATTAGGATTACAGACACATATTATTGAACATGGTTTAAATTCACGTCCATTTGATTGTAGTTCATGTAatgcaaaatttttttttcgtgctGAATTAGATCATCATACTGTTGAACATGAAACATTAGGTAACATAAGTGGAAAtacagtaaataaaattattgaaaaagaaaatgttaaacaagaaataataagggatgaaaaaaataatgaaaatcatgatgaagaagaatataTTGAAGTGGAAAATCTGGAAATTACTGTTGGTGACAAGGACCAAAAATTagatgaaaaaattgaaaaatgttcacctaaaatttaa
Protein Sequence: MALKMLYRGPSSRLETLIEKIQQNKEVNQDVFSSHTSSSFSPSLSDDIPTPNSLIQIENENQNTTVKKCQENNENELQQQQHQQQHQQQQQQKQQHQQPNGGKKIGKIEKIKISTDGSYHCQFCEKTFPRLGYLKKHEQSHAEHMPFKCEFCSRLFKHKRSRDRHTKLHTGDRRYKCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQATLMGSPNLSYSPRSTGSGSSNSSLQKRKYSQLEPTLNTIFPTRYSCLYCTKSDFINPDQLSNHVQTMHGGLSQTTTTSTTTPTISITKNETPISTPSPNFQLNCEFCTMKFSSIQLIFQHLKTTHMDRISSPSSYLEHFNRSLMSNYEMVSYRNSIELKKNLKDDMIKIEVKTPDIVKTINLPNVIEEDSIDIKQEEEQDSPTDLMNNEQNSSPTPQQGPGTFLCNQCNAALPDFETFRTHLKTHLDQGIGSYLCQHCGVAFHDQQIYEKHVFSHFLITNTEYCCPQNCNKTFTKQEEYQKHLFETHTQNLFKCELCTEIFDTKVSIQVHMAVAHLNEIRLYRCSACMELYRNERDFRHHVRSRHIISGAVQCIFCRAICSSELEMHFHLAAHARQYRCPICPESFHHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNINNNNINNNNNLNEFHSQINNKTPYIFTNKLYNTLQIDTLSSKHPNLLHGLYDTISKTSQRYPDTNNGFLSPNKSLLGIYNHPEMVAKLNNFYNSHENHQQQQHHHQQQNGGIINRDTHTNNNNNNNNNGSSSSNNTTERFFPPQTINLNRFNIGHTIDTIASTTTTTTTSTSSTSLSQSQLNLGTSLIKNHLNNYGLDDQLNLNTKTITTATTGRFIVDKGYSCGMCDRCDFSTETEVHTHRKLVHNLKTGVSLRCAYCNGDFRSRTELENHMKISHNTSGKHKCLICDEIFPSPAVLAEHKLTHCKVGPSGRCSHCFISLNDVTFFKAHLTEHNGQEIPVQCICCRQTLNSEFEIGLHAKFHTKSSENKENTCALCLENLPSNAETRVCENCYKKHNLSHKNLQHHQHQQQQQNNSYTHQTSTTIQQNGIESQCNLCKKVLPSSLKLQEHLIEHTFAGCEDRGYICYICSSVFTVPLGLQTHIIEHGLNSRPFDCSSCNAKFFFRAELDHHTVEHETLGNISGNTVNKIIEKENVKQEIIRDEKNNENHDEEEYIEVENLEITVGDKDQKLDEKIEKCSPKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -