Priv007900.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720152.1:43099957-43102890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0021 0.12 13.2 0.8 1 23 192 215 192 215 0.97 2 17 0.093 5.2 8.0 2.1 2 23 259 281 258 281 0.94 3 17 0.0015 0.085 13.6 1.6 3 22 296 315 294 318 0.90 4 17 0.033 1.8 9.4 2.5 2 23 324 346 323 346 0.94 5 17 0.015 0.81 10.5 1.5 1 23 359 381 359 381 0.97 6 17 0.0039 0.22 12.3 0.4 2 23 389 411 388 411 0.96 7 17 0.0026 0.14 12.9 3.3 1 23 417 439 417 440 0.96 8 17 0.29 16 6.5 2.0 2 23 533 555 532 555 0.93 9 17 0.0031 0.17 12.7 0.1 3 21 570 588 568 589 0.93 10 17 0.041 2.3 9.1 2.7 2 23 598 620 597 620 0.94 11 17 0.015 0.81 10.5 1.5 1 23 633 655 633 655 0.97 12 17 0.011 0.62 10.9 0.2 2 23 665 687 664 687 0.95 13 17 0.0056 0.31 11.9 1.6 1 23 693 715 693 716 0.96 14 17 0.00011 0.0059 17.3 5.2 1 23 722 744 722 744 0.98 15 17 0.0037 0.21 12.4 2.6 1 23 750 775 750 775 0.98 16 17 8.8e-05 0.0049 17.5 5.5 1 23 781 804 781 804 0.93 17 17 0.00031 0.017 15.8 1.7 1 23 813 836 813 836 0.95
Sequence Information
- Coding Sequence
- atgggaaaaatttgCAGAGCATGtcttaataatattgaaactggattttcaatttttcatttatatgaaAGATACAATAAAAGcgagaaaatagaaaaaatgttttcggCAATTACGGAATTAGAGgTTAAAATTGGCGACGGTCTCCCAACACAAATTTGCCATCAATGTTTGGAGTATCTTTCAAACGCCTACCAATTTCGTATTCAATGTAGAGAATCATATGACAGTCTTACAGAAAATTTCGTAAACATTGACAATTGTCATGAAATTGAAGTAATATATTCTAAGGATTCAGGATCagaattaacaaaagaaaatacattAGAATCTCAAAAGAAGACAAATAGtcataagaataatttatcgAACGCTGAAGGTAACccaaaaattgaagaaatatatttaatggaatcagaattaaaaatagaaacagatATTGTTTTGCAAGAAATAAATCCtattaaaattgaagtaacTCAAGATATTGACAAGGTTGATAGCTAtgctaaaaaagaaaaagagattgaaatttctaaagacgtatttaaacaaaaaaaaatctctcaTTATTTTCCCTGTTATGATTGCAAATCtacttttatatatagaaaagaacTTCTTCTACATATTAAAAAGGTACATTTACCATTATCAGATAGCAAAACATATTGCGATATttgtaaaaacaattttccatCAATTCAATCACTTTATAAGGATCTTCAAGCACatagtaaaaataatgaaattgaattatctgtcgaagaaaataaatgtccTTTTTGTAGTCGAAAATTTAGACATATACTTGTATTAAGGAAACATGTGGAAATATTTCACAAAAAGGcATTAGCATCTTGTGAAAATAACATAGAAATTATTTGTCCAATTTGtcaaacaaattttacaacaaaagtTGGATATAAGCGACATAGGAAAGAATGCCTGCACCGTAATTCAAATCTGAATTGTCGTTTTTGTGATAAACAGTTTACAACTAAGGAATCTTGTATTGTACATACTCGTGTTGCACATAATGAAAAATcgaatattttaagaaaatataataagtaTAATTGTCATATTTGCAAAAATCAGTACATTTCTCAAGTAACATTGGATAGGCATCTATTATTGCATAAGAAACGCGGGGAAGGTGTGCCGTGTCCTTTTTGTGCTAAACTTTTTACGACAAAGAGTAGAGTTACTTTGCATATTCGAaAACTTCATAATAAAGAAAAGCGTTACAAATGTGAATTATGTGACAATCGATATTTTTATGAAAGCAGTTTAAAAGTGCATCAATTAAGACATCATTTAAATGaatcagaattaaaaatagaaacagatTTTGTTATGCAAGGAGTCACAATTTCAAATCCTCttaaaattgaagaaactCAAGAATATATTGCCAAAGTTAATAAaaaagaacTTCTTCTACATATTAAAAAAGTACATATAACACCATTATCAGATAGCAAAACATATTGCGATATttgtaaaaacaattttccatCAATTCAATCACTTTATAAAGATCTTCAAGCACatagtaaaaataatgaaattgaattatctgttgaagaaaataaatgtccTTTTTGTAGTCGAAACTTTAgccatatatttatattaaggAAACATGTTGAAATATTTCACAAAAAGgcATTAGCATCTTGTGAAAATGGCATAGAAATAATTTGTCCAATTTGTCAAACAAATTTTGCAACAAAAGTTGGATATAATCGACATAGGAAAGAATGCTTGCAACGTAATTCAAATCTGAATTGTCGATTTTGTGATAAACAGTTTACAACTAAGGAATCTTGTATTGTACATACTCGTGTTGAACATAATGAAAAATCGAATATTTTACGAAAATATAATAAGTATAATTGTCATATTTGCAAAAATCAGTACATTTCTCAAGTAACATTGGATAGGCATCTATTATTACATAAGAACCAAGGGGACGGTAAAAATATGCCGTGTCCTTTTTGTGCTAAACTTTTTACGACAAAGAGTAGAGTTACTTTGCATATTCGAGCAGTTCATAATAAAGAAAAGCGTTACAAATGTGAATTATGTGACAATCGATATTTTGATGGAAGCGGTTTGAAAGTGCATCAACTAAGACATCATTTAAATGAAGCTAATTTTAACTGTACATTTTGcgataaatcattttttactTCTTGTGCTTTAACTGTTCATCAACGTAAACACAATGGTGACTCCAGATACAAATGTGAATTTGAAGGTTGTAAAAAAGTATGTTCACAATTAAGCGAACTTAAATTTCATATAAGAAGTAGTCATACTGGTGaacgaaattttaaatgtaaatactgcgataaaaattttataacaaaacaacATTTAAAACAACATTCTGACAGAAATCACCCAGAAACTCCGAGACAACGTACGCATATTTGTACAATTTGTCAAAATGGATTTTATACTAAAAGTGATCTAACAAAGCATGTCAAAAATGTTCataaaaaagttaagaaataa
- Protein Sequence
- MGKICRACLNNIETGFSIFHLYERYNKSEKIEKMFSAITELEVKIGDGLPTQICHQCLEYLSNAYQFRIQCRESYDSLTENFVNIDNCHEIEVIYSKDSGSELTKENTLESQKKTNSHKNNLSNAEGNPKIEEIYLMESELKIETDIVLQEINPIKIEVTQDIDKVDSYAKKEKEIEISKDVFKQKKISHYFPCYDCKSTFIYRKELLLHIKKVHLPLSDSKTYCDICKNNFPSIQSLYKDLQAHSKNNEIELSVEENKCPFCSRKFRHILVLRKHVEIFHKKALASCENNIEIICPICQTNFTTKVGYKRHRKECLHRNSNLNCRFCDKQFTTKESCIVHTRVAHNEKSNILRKYNKYNCHICKNQYISQVTLDRHLLLHKKRGEGVPCPFCAKLFTTKSRVTLHIRKLHNKEKRYKCELCDNRYFYESSLKVHQLRHHLNESELKIETDFVMQGVTISNPLKIEETQEYIAKVNKKELLLHIKKVHITPLSDSKTYCDICKNNFPSIQSLYKDLQAHSKNNEIELSVEENKCPFCSRNFSHIFILRKHVEIFHKKALASCENGIEIICPICQTNFATKVGYNRHRKECLQRNSNLNCRFCDKQFTTKESCIVHTRVEHNEKSNILRKYNKYNCHICKNQYISQVTLDRHLLLHKNQGDGKNMPCPFCAKLFTTKSRVTLHIRAVHNKEKRYKCELCDNRYFDGSGLKVHQLRHHLNEANFNCTFCDKSFFTSCALTVHQRKHNGDSRYKCEFEGCKKVCSQLSELKFHIRSSHTGERNFKCKYCDKNFITKQHLKQHSDRNHPETPRQRTHICTICQNGFYTKSDLTKHVKNVHKKVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -