Basic Information

Insect: Pedicia rivosa
Gene Symbol: TFIIIA
Assembly: GCA_963082725.1
Location: OY720154.1:17027167-17030066[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.9e-05 0.0033 18.1 4.2 1 23 250 273 250 273 0.95

2 8 0.00047 0.026 15.2 0.6 1 23 280 302 280 302 0.97

3 8 5.6e-06 0.00031 21.3 1.4 1 23 311 334 311 334 0.95

4 8 5.7e-07 3.2e-05 24.4 0.1 1 23 340 362 340 362 0.98

5 8 0.00013 0.0074 17.0 1.2 1 23 368 390 368 390 0.96

6 8 0.0001 0.0056 17.4 0.8 1 23 395 417 395 417 0.97

7 8 3.7e-05 0.0021 18.7 2.8 1 23 423 445 423 445 0.97

8 8 0.0022 0.12 13.1 2.7 1 23 451 474 451 474 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.9e-05	0.0033	18.1	4.2	1	23	250	273	250	273	0.95
2	8	0.00047	0.026	15.2	0.6	1	23	280	302	280	302	0.97
3	8	5.6e-06	0.00031	21.3	1.4	1	23	311	334	311	334	0.95
4	8	5.7e-07	3.2e-05	24.4	0.1	1	23	340	362	340	362	0.98
5	8	0.00013	0.0074	17.0	1.2	1	23	368	390	368	390	0.96
6	8	0.0001	0.0056	17.4	0.8	1	23	395	417	395	417	0.97
7	8	3.7e-05	0.0021	18.7	2.8	1	23	423	445	423	445	0.97
8	8	0.0022	0.12	13.1	2.7	1	23	451	474	451	474	0.96

Sequence Information

Coding Sequence: atgCTAAAAAATTGGCAAAATTGGTGTCGTTTGTGTGCTAAACCAAATGGCAGTgatattgatttgttttttaaattagaatcTATTTCTGATTTACCAGAAACTGtttttaagtattttaatttatcgaTAACACCATACGATGGACGACCAACCACAATTtgtgaaaattgttttcaatttatcttaaaattaaaaaaatttaatgagcTTTGTGTGAAGGCCGAATGTGTATTTGCTGAATTTTTATGTGGAAGATTTAATATAGAAATTTCGGAAGAATTGGATATACAAACAATACGATATAAATTCGGATTAGACGAGGAAGAGAAATTAGCCGATTTTACCGCCAATTCTGGATTGTATACAACATTAAAAATAGATCAATCAACAGATACATATGATTTAATTCCAGAAATTACAGttgttaaagaagaaataacaGAATCTTCTACTTCATTTAGTAGGAAAAGacGTGGACGTCCTAAAAAATCggataaaacagaaaataTAGCATTTGTATCTGTTAAAAGTCAAGTAAAAGTAGAAAAAGAGAATTATTATCAGAGTGATTCAACTGACAGTGATGATTTTTCTCATAATGATATTGATCGTGCTGATGAAGAAGAAAGCGTTGATTTTCCACAAGAGCTTGAATCACTTGTACaatcaaatgaaattgatGATGATTCGGATGAAGATGAGAAACCTTTGCAAAGAAAacgtaaaagtaaaaatagtAACTTATTTAAATGTTCAGTTTGTGATAAAACATTCAGTCGTCGTCATTTATTTGAGCAACATAATGCAACTAAACATAATCTAACCGATTTACCTTATGTATGTTCGAAGTGTCCGAAACGTTTTCcaactgaaaaaaaagtaaaattacaTGAAAATGTACATTTACCTGATGCAGTTAAAATGGTTCATCCGTGTCATTATTGCGATAAAAAaTTTAGTAAGGCTGTGAATGTTCAAGCTCATATTCGTGCTATTCATAGAGGTGAACGTCCTTTTATTTGTGAAGAATGCGGTAAATCATTTGGTACAAAAGGAGCATTAAAAGAACATCAAATAACCCATAGTGATGAGAGGCCATTCCAATGTTCATACTGTcctaaaaagtttaaaaatttaccaCGTTTAAAAACTCATGAAGATATTCACAATGATACAATGTATGTGTGTCCACATTGTGGACTTCAGTTAAACACAAAACGAACGTTGAAAATGCATATGGTTGTACATTCTGatgcaaaaaaatataagtgcCATTATTGCGGTAATGAATATAAACGATCGAAAGCCTTAAAAAATCATTTGATTTTACACACAGGTTTAAGACCTTATATTTGCCCATTTTGTGATAAAACGTTTGCAAATGGTTCAAATTGTAGAAGTCATAAAAAGAAAGCACATCCTACAGAATTAGCAGCAGCAGAAGCAGCTGGCGAACTACCTAGAGTTACAAATATTCCGAAATTAGAACATTTACAACCAAAACCACATCAAATACAGCAAATGCAACAACCACCATCCGTAGCTATTCCAACGCCAACTAATATGCCACTACATCCTAATGGGATACAACCTCAACaccagcaacagcaacaacaacagcaacagcaacagcaacaacaccAGCAactacagcaacaacaacatcagcaacaacaacaacaacaactgcaacatcaacataataatattccAATATCAAATCTTAACACAATGCCTGTGCAGCTTTCAATGCCTAATAATGTCCAAGTACCTGTTGGTTTACAAATGTCACACGTTCCATTAATATCCACATCTAATCTTTAG
Protein Sequence: MLKNWQNWCRLCAKPNGSDIDLFFKLESISDLPETVFKYFNLSITPYDGRPTTICENCFQFILKLKKFNELCVKAECVFAEFLCGRFNIEISEELDIQTIRYKFGLDEEEKLADFTANSGLYTTLKIDQSTDTYDLIPEITVVKEEITESSTSFSRKRRGRPKKSDKTENIAFVSVKSQVKVEKENYYQSDSTDSDDFSHNDIDRADEEESVDFPQELESLVQSNEIDDDSDEDEKPLQRKRKSKNSNLFKCSVCDKTFSRRHLFEQHNATKHNLTDLPYVCSKCPKRFPTEKKVKLHENVHLPDAVKMVHPCHYCDKKFSKAVNVQAHIRAIHRGERPFICEECGKSFGTKGALKEHQITHSDERPFQCSYCPKKFKNLPRLKTHEDIHNDTMYVCPHCGLQLNTKRTLKMHMVVHSDAKKYKCHYCGNEYKRSKALKNHLILHTGLRPYICPFCDKTFANGSNCRSHKKKAHPTELAAAEAAGELPRVTNIPKLEHLQPKPHQIQQMQQPPSVAIPTPTNMPLHPNGIQPQHQQQQQQQQQQQQQHQQLQQQQHQQQQQQQLQHQHNNIPISNLNTMPVQLSMPNNVQVPVGLQMSHVPLISTSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -