Priv003290.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720151.1:43107098-43109625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4e-06 7.7e-05 23.2 0.9 3 23 227 247 225 247 0.95 2 13 4.1e-05 0.0023 18.6 2.5 1 23 252 275 252 275 0.98 3 13 0.034 1.9 9.4 4.5 1 23 391 413 391 413 0.96 4 13 0.015 0.84 10.5 1.6 5 23 455 473 451 473 0.92 5 13 0.037 2.1 9.3 0.9 1 23 486 509 486 509 0.92 6 13 0.00016 0.009 16.7 0.2 1 23 542 564 542 564 0.98 7 13 1.3 72 4.4 0.3 1 23 568 593 568 593 0.91 8 13 0.038 2.1 9.2 1.6 1 22 601 623 601 623 0.95 9 13 0.00036 0.02 15.6 4.7 1 21 630 650 630 651 0.96 10 13 5e-07 2.8e-05 24.6 0.5 1 23 657 679 657 679 0.98 11 13 2.3e-06 0.00013 22.5 0.7 1 23 685 707 685 707 0.99 12 13 0.0023 0.13 13.1 3.7 1 23 713 735 713 735 0.98 13 13 0.095 5.3 8.0 6.6 1 23 741 764 741 765 0.95
Sequence Information
- Coding Sequence
- ATGGATACAAATTGTGAATTAGAAGAATTGGAATTAGACACATCCCTCATTTGTCGAATATGTTTACTTCAAACGGGaaaattcttcaatatttattcCTATTGTATTGTTGACGGATATATTCTATCAATACCAGAAATGATTAAGTCATGTCTGGAATTAGAAttaaacgaaacaaataaagaatttcCTGCTAAAATATGCGATACTTGTAAACAACAGATTGTTAATTTCTattcatttaaagaaaaatgtaaaaaagcGGAGCAAATATTACGTTGTTCTTTAATCAAAACAGTTGATGTTAAGCAAGAAGATGAATTGCTAATATTTTTAGAACCTGATCTGGAACCagaagaaaaagttgaaaTCGAAAATAATGCTGATGACATTGATACCCCAAAATTACGTCGTTCTTCACGTCCAAAAAATATAACGccaaaagttaaagaaaatttagagGAAATTAAGTTTAAGGaagaaattatattagatGATGATTATTTAACTAATTCAGAAAGTCCTATTAAAACTGACATTGAAACagaatttgatttttcaatagaaaatgaTGAATATGATTATGATACTTCTGACACAGAACAATATACTGATGAATTAACaccaataaaattaacaaataatgaaaatctaaaaacaaaacaatgcCCTAAGATATGTAAACAATGTGATAAAGTATTTGAAACATCAAACAATTTAAAGCGTCACATGGAAGCCCATTTAGGTGTACAATATAAATGTCGTATTTGTTCTAAAACCTATGTACATCAAGCATCACGAAATCGTCATATGCGTATTGCACATCCATCAGAAATGAAATCATTACTTGCTAAAAAAGATAATCCATTTGCCAGAAATGATCCAAAAAATCCACCATTTAATATCAATAAAGATGGTAAAGttcgaaaaaataaaaaaattaaattggaattaataaatgataatcataatgataaaaatttggtGATTCCATACCATCAGTCTGATGAAACTGGCGAAACCGaagaaattatagaaaacGTTACAGCTAATACAATTTctgaaaattcattaaattatgatttaaacatagaaaaattaaataataataatatagatgCTGCACCATCAGTTGATATTTcgatatttgaaataaatgcAATGAAAATGTATATGTGTGAATTATGTGAGACTACATTTGACACACGTACGTTATTTATGAAACATTGTAAAACACacgattattattgttataaatgtTGCAAagtatttttaacattaaatgaACTTGATAAACACACATCAAATCATATATTTCTGGAAACATATATACCACCAGTAAAATcagaattattttgtatttattgcCAAAAACGTTTTAAAAGTCAATATCAATATGATCAACATGTCAAATTGCATGAATCAATGAATGTTTTAACAGAAAAGCTAGATTTTTTTACTTGTAATGATTGTCATATGatgtttttaacaataaataatttagaacaACATAATTCAATTATACATCCAATATGTGATATGTTTGTTGATGATCGTTCATGTACTGATTATCAATTTTTAGatgatgaaaaacaaattgattttaatagtGGTGAtgatatatataaatgtgGTGTTTGcgaaaaaatatacacaactGTCAATGATTTAAAAACACACATTATATtacatttagaaaaatttccATGTCCTTATGACGATTGTGGTTGTGaatatgatttattttcaCGTTTAAGTATACATATTGCCGCTAAGCATTTATGTAAAGAAgatattgattttaaatgtttaCATTGCAATAACGTTTCATTTGAAACATATGATCAATTACAACaacatattaaaaaagaatgtGAAGAAAGGAAATTTCAATGTGATCATTgcaataaaaaattcttttcaaagAAAGCGTTAATGCATCACCTAAAGAATTCACGAGAGAAGAAATATATGTGCCAATATTGTGGAAAATCATTTGCACAACAAGGAGAATTAACAATACATAATAGATCTCATACAGGAGAACGACCATTTCAATGTACGGTGTGTGGTAAATCCTATAAAACAGCTAGTATGAGAACCGCACATATGGACACACATATTTTAGGGAAAACATTTTcctgTACAATTTGCAGTAAACAATTACAAACACGCACCAGTTTTAGAAATCATATGAAGCGTCAtattgaagagaaaaaacattCATGTGAAATATGTCTAAAACGCTTCTTTACAAAATATCATGTCAAAATGCATGCTATGAAAGTTCATCATAATACTAAAGTAATGAAAATACAACATTCGTAA
- Protein Sequence
- MDTNCELEELELDTSLICRICLLQTGKFFNIYSYCIVDGYILSIPEMIKSCLELELNETNKEFPAKICDTCKQQIVNFYSFKEKCKKAEQILRCSLIKTVDVKQEDELLIFLEPDLEPEEKVEIENNADDIDTPKLRRSSRPKNITPKVKENLEEIKFKEEIILDDDYLTNSESPIKTDIETEFDFSIENDEYDYDTSDTEQYTDELTPIKLTNNENLKTKQCPKICKQCDKVFETSNNLKRHMEAHLGVQYKCRICSKTYVHQASRNRHMRIAHPSEMKSLLAKKDNPFARNDPKNPPFNINKDGKVRKNKKIKLELINDNHNDKNLVIPYHQSDETGETEEIIENVTANTISENSLNYDLNIEKLNNNNIDAAPSVDISIFEINAMKMYMCELCETTFDTRTLFMKHCKTHDYYCYKCCKVFLTLNELDKHTSNHIFLETYIPPVKSELFCIYCQKRFKSQYQYDQHVKLHESMNVLTEKLDFFTCNDCHMMFLTINNLEQHNSIIHPICDMFVDDRSCTDYQFLDDEKQIDFNSGDDIYKCGVCEKIYTTVNDLKTHIILHLEKFPCPYDDCGCEYDLFSRLSIHIAAKHLCKEDIDFKCLHCNNVSFETYDQLQQHIKKECEERKFQCDHCNKKFFSKKALMHHLKNSREKKYMCQYCGKSFAQQGELTIHNRSHTGERPFQCTVCGKSYKTASMRTAHMDTHILGKTFSCTICSKQLQTRTSFRNHMKRHIEEKKHSCEICLKRFFTKYHVKMHAMKVHHNTKVMKIQHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -