Priv014535.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720154.1:34940331-34942724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.002 0.11 13.3 0.5 1 23 9 34 9 34 0.97 2 14 0.48 27 5.8 0.2 1 23 40 63 40 63 0.81 3 14 0.0023 0.13 13.1 0.7 1 23 106 128 106 128 0.96 4 14 0.0084 0.47 11.3 0.5 2 23 136 157 135 157 0.94 5 14 0.016 0.88 10.4 0.4 1 20 163 182 163 184 0.94 6 14 0.011 0.59 11.0 0.1 1 23 189 211 189 211 0.96 7 14 7.9e-06 0.00044 20.8 1.3 1 23 216 238 216 238 0.97 8 14 0.00037 0.021 15.6 0.5 1 23 244 266 244 266 0.98 9 14 0.012 0.65 10.9 0.9 1 23 276 298 276 298 0.96 10 14 0.00018 0.0099 16.6 3.2 2 23 336 358 335 358 0.94 11 14 0.0019 0.11 13.3 0.1 1 23 363 387 363 387 0.96 12 14 1.9e-05 0.0011 19.6 1.2 1 23 403 427 403 427 0.97 13 14 1.7 96 4.0 0.6 1 21 432 452 432 453 0.87 14 14 0.5 28 5.7 0.3 2 21 474 493 473 494 0.93
Sequence Information
- Coding Sequence
- atggaTTCTCAGTTAGATAGTTCATTTCAATGCAATGAGACTGGATGTCTTAAATCTTATTCTGGAATTTCTGGACTTAACAATCatattaaaaaGAAACATTCCGGAACTTCTGTGTTTCCTTGTGATGAATGTCCTCAGATATTTAAAGCTACGCAGGAACGTACAATGCATAAATTGCAAGAACACGAAGGCAGAAGATATCAAACTattaggcaaaaaaaaatgaacacaaaTAGTAATTCTGAATTATGTAAATCTTCAACTATGGCAAATGAATCAAATTTAGAAGCAACAAGTAGCACAGTTACAGAATACCCATGTCCTGAATGTAGTAAAGTTTTTTATACAATGAATGTGTTCAATGAACATCGTAATTTTCACGACAGTAATATTCCAAAGCAATCATGTTCTGTTTGtggaaaagaatttttaacacaacgtaaattaaaagaacattcaattattcataaagaacgtattatttataaatgtaatgTATGCGCTAAAGTATTTTTAAGAAGTCAAACGTTGCAATATCATAGGACAATATGTAAAGCAGCTTTTCCTTGTGATGAATGTGTTGATAGTTTTATGACAAAAGATGCATTAGAAAAACATAAGATTTTACATAaagttaaacaatttatttgtacaaaatgtaataaaacTTTTCCAAATCAGCAAGCATTAATGAATCATGAAAAGCGTCATTCAGTTAGAATGAATTATATGTGCCCAATATGTAAGGATTCTGTTTCAACACGTGCAAACTTTGAGAAACATCTTAAAAATCATTTAgACGTTAATACATCAACAAATACTTACATCTGTAATACATGTGGACACACATTTTCAATCAAAGAGATCTATGAAGAACATATTCAATCACATTCTAAAGATTCCAAAAATGATCCATCGAATGAAATTGAATCACATGAGTCCAATGTTGTTGCTCCTTTACTCAGTGAATGTAATGATGATCCAACTAcagtgaaaaatttaaaatgtgaCCAATGTGATaaagtttttcaatttcaatcaTTATTAACTCATCATAGAACTAAAGAGCATGAAGTAAAAAGATTCCCTTGTACAATTGGATTTTGTGatcaaatttattcaacaattGATGAATTAAATTCTCACATTAAACAACATGAATATGATAAAAATGAGAAACTAGttgaaaatcaaacaaatgaATATTCTTGCAGTGTCAATGGATGTGAAAGAACATTTGAATTTCAAAGTAAATTAAAACGCCATATGTTGTCACATATTcttaaagaatataattgCCTTAAATGTGATCGTATTTATTATTCTACTGGAATTTATgagaaacatttaaaatattgttcaaCATCACAGGAAAATCTAATTCTtgatgatgaagaattaaattcTGGACCAATTGAATGTTATATTTGTCAACAATTATTTGAGAATCAACGAGTTCTAAAATATCATCGTAATTTTTGTAAAGAGGAAAACAAGAATGATGTGGAAAttcaagaagaaaataatttaaattctacaAAGATTGTTGAAGTTTATGTTGAAAGTGATTTatctacaaattttttgtcaGAATTATAa
- Protein Sequence
- MDSQLDSSFQCNETGCLKSYSGISGLNNHIKKKHSGTSVFPCDECPQIFKATQERTMHKLQEHEGRRYQTIRQKKMNTNSNSELCKSSTMANESNLEATSSTVTEYPCPECSKVFYTMNVFNEHRNFHDSNIPKQSCSVCGKEFLTQRKLKEHSIIHKERIIYKCNVCAKVFLRSQTLQYHRTICKAAFPCDECVDSFMTKDALEKHKILHKVKQFICTKCNKTFPNQQALMNHEKRHSVRMNYMCPICKDSVSTRANFEKHLKNHLDVNTSTNTYICNTCGHTFSIKEIYEEHIQSHSKDSKNDPSNEIESHESNVVAPLLSECNDDPTTVKNLKCDQCDKVFQFQSLLTHHRTKEHEVKRFPCTIGFCDQIYSTIDELNSHIKQHEYDKNEKLVENQTNEYSCSVNGCERTFEFQSKLKRHMLSHILKEYNCLKCDRIYYSTGIYEKHLKYCSTSQENLILDDEELNSGPIECYICQQLFENQRVLKYHRNFCKEENKNDVEIQEENNLNSTKIVEVYVESDLSTNFLSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -