Priv015125.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- prdm10
- Assembly
- GCA_963082725.1
- Location
- OY720154.1:43972864-43976561[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0043 0.24 12.2 0.3 3 23 140 160 139 160 0.94 2 11 2.1e-05 0.0012 19.5 1.0 1 23 184 206 184 206 0.98 3 11 0.0026 0.14 12.9 1.1 1 23 259 281 259 281 0.98 4 11 0.00018 0.0099 16.6 0.5 1 23 289 311 289 311 0.99 5 11 0.0023 0.13 13.1 1.1 1 23 318 340 318 340 0.98 6 11 0.0051 0.28 12.0 1.6 1 23 346 369 346 369 0.96 7 11 4.3e-05 0.0024 18.5 0.4 1 23 374 396 374 396 0.97 8 11 7.1e-06 0.0004 21.0 1.3 1 23 402 425 402 425 0.95 9 11 0.0005 0.028 15.1 1.5 1 23 481 504 481 504 0.97 10 11 0.0012 0.066 14.0 3.0 1 23 526 549 526 549 0.97 11 11 0.0064 0.36 11.7 5.0 1 23 587 610 587 610 0.96
Sequence Information
- Coding Sequence
- ATGCCGCTTGTTACCAAATACACGGTTTATTCTAAAAAGGATATTCCTTTGCGAACAAAGTTTGGACCGTTTGAAGGTGATGTTTGGGATATTAACgaaattgatttaaatcatttaaaaaatgaaacaccAAAAAATTATCCTCTGTTATTGATTGAAGGTGGAAAAATATTAGAGACATCAAATGAAAacaCATCAAATTGGATGAGATTTGTACGTTTTGCTGAAAAATTTGcagaacaaaatttattattatttgaaacaaatggaaaattatattttaaaagttgCCAATTTATTCGTCCAAAACAAGAATTAAGAGTTGGATACAGTAAAGAATATGCTGAACGTTATAATTTACGTATTTTATATCCTGatgaaattgataaaaaaaatatattacatgATGATAATTCATGTTTTGAATGtgatataaaatttgaaagtTCTGAAGAAATGCAAAAACATTTAGATGAACATGATTGTGATAagCCGATAAAGCCTTTGAATCGAAGAAGACGTCCGTTACGTAAGAAgacaatagaaaaatttgtttgtccCGTTTGTAATAAAATGTTCCTTCGTAGtattaattttagacGACATATTAAAAGTCATAATGGTAATCCTCTTGTAGAGAAATGTGCATCTGattcagaaaataataaaattggaaataaaacATTGAAAAACCGAAAATTAGGAACAAAATCAAAACTAGtaaaaagtagaaaatatttaaataataaagaaaataaaaatgttgacaATCGTTTTAAATGTGATTCTTgttcaaaatcatttttaacaGCAGAACGTTTAAAgaaacATTTATTGGTTCATAGtccaaatgaaacaaaaccTTATCAATGCAGTTATTGTTCAAAACGATTTTTAAATCCATCAGCAATGACAGCACATGTAAAAGTACATTTATATGGAAGAAGTATTTTTCAATGTTTAATTTGTTCAGAACGTTTTAAATATACACCAGAATTTTCTAAACATGTTAAAATTCATATGGAAAATGGTTTTTATACatgtaaattttgtaataagaaatttccTGAATATGTTTTAATTCGTAAACATGTACGTGCATTTCATCCAACTAGTCGTCATCCATGTAGTATATGCGATAAACGTTTTCCAGCACTTGATAAACTTCGAGTACATATGTTAAGTCATTCTgataaaaaagattttctttgtTCTATTTGtggaaaacaatttaaacGTACGGATAAATTAAAAGAGCATATTAAAAGAATTCATACAATGgttaagaaagagaaaaaacaagtAAAGGTGAGACATGAAAATAATGTTGATAATCCAGATATGcttgaagatgatgatgaatgtTTAGAGAATggaaagaagagaaaaaaatccaGATTTTTACCAAAAGTTTCACCAAATGATTATCAACGATTTATTTACAAATGTCATGATTGTTTATTaggATTTAAACGTCGTGGAATGTTAGTTAATCATTTAGCTAAACGTCATCCTGATATAAGAATTGATTCTGTACCTGAGCTAAATCTTCCAATATTAAAAGCACAAAAGTTTTTCTATTGTCAATATTGCAATAAAGTTTATCGAAGTAGTGCTAAACGAAAATCacacattttaaaatatcatcCAGgaTCTGAACTTCCAATGTCTGGCCGCCAAAAAGGTGGTATTCCAGAGATACCTGGTTTTCCTAATCCAACATTTACTGAAACAgtttcaacaataacaacacaTCCGCATGCATGTTCCTGGTGTCACAAACAATATGCTTCCCGGACAAAATTAGTCCAACATCAACGTAAAAAACATCcggaaaatttaaaagaatttattaagaTACCAGAAATTCATACAAATTTATGtgaagaaaatgataaattattagaaaatacgGAGAAATATAATCCAAATGGTggtaattatgaaataaactCTAATACACATTTTACTGATAGTAAAgatataaatgataaattactgtataataatgatgatgacaCAACACTTCAGCATACACAAACAATatcaattaatgaaaaatatcaaTATTTAGAAAAGGAACGTGAaggtaaatttattaaaattggtGACGATGAtcaatatacaaaattaaatggtaataataatataaaagatatTGTTGATTCATCTGTTTCATCAACAACATCACAACAATCTGATTTACCacatttatttgaagaaattgATTATATGCAATTACGTCCAATTATTGTTAATCCAGAAATTAATACaagacaaaatattaataaaaaactatcAAATAATTTAGGGTTTTCACAAAATGGCggatga
- Protein Sequence
- MPLVTKYTVYSKKDIPLRTKFGPFEGDVWDINEIDLNHLKNETPKNYPLLLIEGGKILETSNENTSNWMRFVRFAEKFAEQNLLLFETNGKLYFKSCQFIRPKQELRVGYSKEYAERYNLRILYPDEIDKKNILHDDNSCFECDIKFESSEEMQKHLDEHDCDKPIKPLNRRRRPLRKKTIEKFVCPVCNKMFLRSINFRRHIKSHNGNPLVEKCASDSENNKIGNKTLKNRKLGTKSKLVKSRKYLNNKENKNVDNRFKCDSCSKSFLTAERLKKHLLVHSPNETKPYQCSYCSKRFLNPSAMTAHVKVHLYGRSIFQCLICSERFKYTPEFSKHVKIHMENGFYTCKFCNKKFPEYVLIRKHVRAFHPTSRHPCSICDKRFPALDKLRVHMLSHSDKKDFLCSICGKQFKRTDKLKEHIKRIHTMVKKEKKQVKVRHENNVDNPDMLEDDDECLENGKKRKKSRFLPKVSPNDYQRFIYKCHDCLLGFKRRGMLVNHLAKRHPDIRIDSVPELNLPILKAQKFFYCQYCNKVYRSSAKRKSHILKYHPGSELPMSGRQKGGIPEIPGFPNPTFTETVSTITTHPHACSWCHKQYASRTKLVQHQRKKHPENLKEFIKIPEIHTNLCEENDKLLENTEKYNPNGGNYEINSNTHFTDSKDINDKLLYNNDDDTTLQHTQTISINEKYQYLEKEREGKFIKIGDDDQYTKLNGNNNIKDIVDSSVSSTTSQQSDLPHLFEEIDYMQLRPIIVNPEINTRQNINKKLSNNLGFSQNGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -