Priv014494.2
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- Zfa_1
- Assembly
- GCA_963082725.1
- Location
- OY720154.1:34270654-34273273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.012 16.3 0.5 3 23 267 287 266 287 0.95 2 13 1e-05 0.00058 20.5 2.1 1 23 293 315 293 315 0.98 3 13 0.004 0.22 12.3 1.7 1 23 321 343 321 343 0.97 4 13 0.00027 0.015 16.0 1.2 1 23 348 370 348 370 0.98 5 13 0.0052 0.29 12.0 1.4 1 23 379 402 379 402 0.97 6 13 1.6 90 4.1 0.4 1 11 408 418 408 424 0.80 7 13 0.0018 0.098 13.4 0.3 1 23 434 457 434 457 0.96 8 13 1.3 71 4.4 4.0 2 23 475 496 474 496 0.97 9 13 0.0016 0.091 13.5 3.4 1 23 502 524 502 524 0.97 10 13 0.029 1.6 9.6 3.5 1 23 530 552 530 552 0.97 11 13 3.5e-07 2e-05 25.1 2.4 1 23 558 580 558 580 0.99 12 13 6.6e-06 0.00037 21.1 0.9 1 23 586 608 586 608 0.99 13 13 0.00022 0.012 16.3 1.9 1 23 614 637 614 637 0.97
Sequence Information
- Coding Sequence
- ATGGCTAATAAAAATCGGCGTTGTGCAATAACATCTTGCGTTATATCATCAAAAACTAATCCTGATGAGAAATTCGTATTATTTCCAAAATATGGAACTGAAAGATTTTATTTGTggttgaaaaaaacaaatttaaatttagaaaaaggAATTCATGTTTTGTGCAAACGACATTTTACTCCTGATTGTTTTGATGGTAAAGAACGTTTGAAAAGAAATGTTTTTCCGTCATTAAATTTACTAAACAATAATCCGTCATCATcagttattttcttttctccaAAATCTTATACAAAAACTAAAGAAGGCGGAATAGTGGATAATCTACTAATTAAAGATGAATAtCAAAATGCACCCAAAGATCTTGAAATAACTCATAACATAAATGAGAACTTAAATGAGGGATCGCAGATTAAGGTTGTATTCAATTCTTGTTTAGTGTGTTTACAAAATGTTGGTGTCTTATCAATTTACACGGAGGAAGAACGAAATATTTCATTAgctgaacaaataaaaatgtttgccGATATTACAATTGATAATTGTGAATCGGATATTTCATGTGCCGTGCATGAAGATGAACACTCTttaaatgagaataaaaacaatcaaTTTTGTTCTGTATTTTTTCCAGATGTAAAAGTGAGtgagaaagaagaaagtttAGATGATATTAAAGAAGAATCTCCAGTGACAATATCAGATGAAGTAAATCAACAAGgtacagataaaaaaaatggtgaagTTGCTCCTTCAGTAATTGTAGGATATAAAACTTGCGACTGTTCTcttaataattgtaatgaatgtggaaaagtttttcaaacaaataaaactttagCAGAACATAAAATACTTCATACCGATGAAACACCTTATGAATGTGataaatgtaacaaaaaattccAACAAAAAGCTAAATTAATGTCACATCAAAGATGgcacaaacaagaaaaaaaatatatttgtgaaaTTTGTAGTCGCCAATATAAATCAATACAAAGTTTAAATcatcataaattaattcatggtgaacctaaatataaatgtaatgaATGTGAGAAAGTGTTCCATACACCAAACGGTGTTCGAGATCATGCAAAACGACATGCACAAAAGAAACAAGGAATTACTTATTCATGTGATAAATGTGATAAAACTCTTTCTTGCAAAGCTGCATTAATAATGCATCAAAAATCCATTCATTTAGGAATTAAGCTTTATAAGTGCGTTATTTGTGATAAAGAtTGCAATATACCTAGATCACTTTTATTATCCATTTATTTAGGTGAAAAACCATACTCATGTGAAGTGTGTGATGAAAAATTTGCACAACGACCTATACTTACCAGgcatttagaaaaaaaacataatattaaAAGAGGCACAAAGAATATCTCTAATATAgATCGCGCCAATTTACAATGTCAAATGTGCAAAAAGCAACTTTCatgtttacaaaaatttacagaACATATGAGAATTCATTCAGgaGAAAAACCTTATGAGTgcaaatattgtaaaaaaagtTTTAGAGTTTCACAAGCTTTAGTTTGCCATACCAGAATACATACTGgTGAAAAACCATTTCAATGTAAATATTGTCCTGGTAAATTCAAAACATTGTCACATTCGATTCAGCACGAAAGGCAACATACAGGAATTAAACCGTACAAATGTTCCATTTGTCATAAGGCTTTCAGCAATTCCGGTTATCTTAAAATCCATACGAGAGTTCATTCTGGCGAAAAACCGTATGAATGTCCTCATTGTGAAAAAACGTTTACGACTACAGGAAATCGTGACGCTCATATCAGAGTTCATACTGgcGAAAAACCTTACAGCTGTAAACAGTGTGATGCCGAATTTATtcgattaaaatatttaaagcaTCACATTGAGAAAGAACACCCgcaaaataatatacaattaGAATTGGAAAATGAAGGATCAGAAGCTGATACCAGTTCTGAATAG
- Protein Sequence
- MANKNRRCAITSCVISSKTNPDEKFVLFPKYGTERFYLWLKKTNLNLEKGIHVLCKRHFTPDCFDGKERLKRNVFPSLNLLNNNPSSSVIFFSPKSYTKTKEGGIVDNLLIKDEYQNAPKDLEITHNINENLNEGSQIKVVFNSCLVCLQNVGVLSIYTEEERNISLAEQIKMFADITIDNCESDISCAVHEDEHSLNENKNNQFCSVFFPDVKVSEKEESLDDIKEESPVTISDEVNQQGTDKKNGEVAPSVIVGYKTCDCSLNNCNECGKVFQTNKTLAEHKILHTDETPYECDKCNKKFQQKAKLMSHQRWHKQEKKYICEICSRQYKSIQSLNHHKLIHGEPKYKCNECEKVFHTPNGVRDHAKRHAQKKQGITYSCDKCDKTLSCKAALIMHQKSIHLGIKLYKCVICDKDCNIPRSLLLSIYLGEKPYSCEVCDEKFAQRPILTRHLEKKHNIKRGTKNISNIDRANLQCQMCKKQLSCLQKFTEHMRIHSGEKPYECKYCKKSFRVSQALVCHTRIHTGEKPFQCKYCPGKFKTLSHSIQHERQHTGIKPYKCSICHKAFSNSGYLKIHTRVHSGEKPYECPHCEKTFTTTGNRDAHIRVHTGEKPYSCKQCDAEFIRLKYLKHHIEKEHPQNNIQLELENEGSEADTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -