Priv014199.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
-
Assembly
GCA_963082725.1
Location
OY720154.1:30244744-30250254[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.058 3.2 8.7 0.0 1 20 485 504 485 506 0.94
2 9 0.001 0.058 14.2 2.5 1 23 549 571 549 571 0.97
3 9 4.3e-05 0.0024 18.5 1.9 1 23 578 600 578 600 0.98
4 9 2.3e-05 0.0013 19.4 0.6 1 23 752 774 752 774 0.98
5 9 3.7e-08 2.1e-06 28.1 2.0 1 23 780 802 780 802 0.99
6 9 0.00049 0.027 15.2 1.7 1 23 808 831 808 831 0.96
7 9 2.7e-06 0.00015 22.3 0.6 1 23 874 896 874 896 0.98
8 9 8.9e-08 5e-06 27.0 0.8 1 23 911 933 911 933 0.99
9 9 0.21 12 6.9 0.2 1 21 939 959 939 960 0.94

Sequence Information

Coding Sequence
ATGCCAAATAATTGTTGTGTTCCTGGTTGTTCTTCTAATGTGAAAAGCAAGAATAAAGCCAATAGCAATGTtccaatattttcatttccaaaaaatattgaaaagttaaacaaatggaaaaaatgCATTCCTAGAGAATTTGAATTAACGAAATATAGCTCAGTTTGTATTCATCATTTTGCTGAACAACATATTGTGAGaGAAGACCGAATGACTCGGAAAGATGGTAGCGTGTTAGTAGTTCCAAGAGACAGATCAAAATTGTCTGATGATGCTTTTCCAAGTATTTTTCCTACTCTACCATCTTACTTCTCAATATCAGTACCTGCCTTGAGGGAACCACCGGCAAAAAGATTACAAATATCTAGATTGTCTTGCTCAGTCCCAGCCGTTAAATTAAGTAAACCTGTAAAAGAAGTGAAAGAACGTGCAAAAAgattcaaaaagaaaactttgaGTGACGAATGGACTGACACTTATACATCAgaAGAAGTGCGAACTGAAATATGTTTTGTATCCGTTAATGAGGAAAGAGTAAATGAATCTGATGCCTGTGAGATTAATACaacattaaattcaaaatctaaattaaattcaaataataaatttagaaagaaaaataaatattcaaagatTACTGGAAGTGAAGAGGAGTTTGAGATCGCTTTATTAAActtaatatttgaaaaaccTCCCTTATTTGATCACACTTTACCTATAAAGCAAAGACTAAATGATGTAATCGATAAGTTATGGGAAGAAGTTTCTGATGAATTATCGAAATATGgtacttttaataaatcagAATTAATTGGCTTATGGCAACCTTTACGAGACAATTATACTAGATACAAAAATAGCCTTAAAAATGTATGTTCTAATGATTCAGCTATATTACCTCAACCAAAATATGCAGATATATTAAAGCAGTTGGATAATATTATAGATACAAGAAGACTGACTGTTTCCACCGAAACTGATACCTCTGTGGATATTTGTAGTTCAGATAGTCATCATTCTATACCCATGATAAACAAATCTTCGATAACAATACACTCCTGTAGAGCTTGTCTCAGTAACGATGGCACATTATCAATATATGAACGACATAATAATCTATTAATAGTTGTCATGATTTCAGATTTGACAAATGTGAAAATGAATGTGGCTGAAGAATTTCTTAAAACCATTTGTAAAAGTTGTGTTGAAAAGCTTTACGCTGCATTTGTTTTCAAACAAGAATGCGAAAATTCCGAGAAAAAATTGCAACATTTTTTGCTTCACGATAGTGCATTAAAAGAAGAACCCAACAATATTTCCGAGACTGAATTTACAGAAACAGATTCATACATTGAATTAGATTATGATACTGATGATATGAATATGAAGGCGAAGGCATCTGTTCAAATTAAATTGGTCGACATATCAGTAGAAGATAAACTGAGTGAAAATTATGAATGTGAATTGTGTTTACAATCATTTGACAATGAACAAAGTTTGGCAACTCATAAAGCcatatataataagaaaaaatcttCTTTGGCTAAATCTGCTCAGCAGTATACACAAATTAtagcagaagaaaaaattaattcaattggaatctctaaagaaaaagaattacaaCTTGAAAGTGAAAAACCTTTTGAATGTCAATATTGCGATAAAACTTTCAGACTTAAAGCCTCAAAGGTAAAACATACAAAATTGCATACTGGTGATAATAAACGTCATCAATGTGAAATTTGTCTTAAGCGTTTCTCTTTACCTTATAATCTTCGAATTCACAAAAGAATACATACGGGAATggttaataagaataaaagaagaagaatgcgGCAAAATAGAGAACGACCACCATTTGTTCAACAAGAAATGGATGTACCACCATTTGTTCAACAAGAAATGGATGTACCACCATTTGTTCAACAAGAAATGGATGTACCACCATTTGttcaacaacaaatttatgtACCACCAATTGTTCAACAAGAAAATGTTGTACCACCAAATCGTCAACAACAAATTCTTGTACCACCACCTCCTCCAGTACCTCATCCACTTGAACAGCAAATTTTTGAACAAGTTAGACAATCAAATTATCAAGATTTAGCTGCAATCATAAACAGGATGAAAACATATGTGGATGAATCTGTCCAAATCATGaacaatagaaaatatgaGCAGTGGGGTGTGTACGTGGAAATTATAAGAAGACTAAGGGTTCTTTATCCAGAACCAGGCGTTCGTCCTTATGTGTGCAATATTTGTAGTAAAGATTTTGTTCAACGTGGCTCGTTTGTAATGCATATGCGACAACATTCTGGAATTAGACCATATCAATGCGAACATTGTGGTAAAGATTTTGTTCAAAAATCATCATTGAATGTTCATCTTCGCACACATACCGGCGAAAAACCGTATAAATGTGGATCATGTGATAAGGCATTTGTTCAAgcacaacaattaaaatatcataaacATTCAGCACATGACGGTCCACCTGTTGGAAAAATTCGtgatataaataatgataCTATAATaacaatgacaacaacaacaacaaagtctGAGGTTCAAGctacaacaaatttaaatccAACTGTAAAACAATATCCATTTGTATGCACATTATGTAATAAGGGTTTTAAATTACCATCATCATTAACATCACATATGAAAATACATTTAGAAGATAGAAAACACATATGTAATCAATGTGGTTCTGTATTCAAATGTAATGTTTGTGAAAAAGTTTTTACGCGAAATGGGGATTTGAAACGGCATGCCAGAATGCATAGtgGAGAAAAACCGTATGAATGCATGCTttgcaataataaatttgcaaGTGTAAGTAATCAACGAGCACATaccaataattattgtaaaagtAATCCCAATATTATAAGGAAAAATGCAGCAAAATTATAG
Protein Sequence
MPNNCCVPGCSSNVKSKNKANSNVPIFSFPKNIEKLNKWKKCIPREFELTKYSSVCIHHFAEQHIVREDRMTRKDGSVLVVPRDRSKLSDDAFPSIFPTLPSYFSISVPALREPPAKRLQISRLSCSVPAVKLSKPVKEVKERAKRFKKKTLSDEWTDTYTSEEVRTEICFVSVNEERVNESDACEINTTLNSKSKLNSNNKFRKKNKYSKITGSEEEFEIALLNLIFEKPPLFDHTLPIKQRLNDVIDKLWEEVSDELSKYGTFNKSELIGLWQPLRDNYTRYKNSLKNVCSNDSAILPQPKYADILKQLDNIIDTRRLTVSTETDTSVDICSSDSHHSIPMINKSSITIHSCRACLSNDGTLSIYERHNNLLIVVMISDLTNVKMNVAEEFLKTICKSCVEKLYAAFVFKQECENSEKKLQHFLLHDSALKEEPNNISETEFTETDSYIELDYDTDDMNMKAKASVQIKLVDISVEDKLSENYECELCLQSFDNEQSLATHKAIYNKKKSSLAKSAQQYTQIIAEEKINSIGISKEKELQLESEKPFECQYCDKTFRLKASKVKHTKLHTGDNKRHQCEICLKRFSLPYNLRIHKRIHTGMVNKNKRRRMRQNRERPPFVQQEMDVPPFVQQEMDVPPFVQQEMDVPPFVQQQIYVPPIVQQENVVPPNRQQQILVPPPPPVPHPLEQQIFEQVRQSNYQDLAAIINRMKTYVDESVQIMNNRKYEQWGVYVEIIRRLRVLYPEPGVRPYVCNICSKDFVQRGSFVMHMRQHSGIRPYQCEHCGKDFVQKSSLNVHLRTHTGEKPYKCGSCDKAFVQAQQLKYHKHSAHDGPPVGKIRDINNDTIITMTTTTTKSEVQATTNLNPTVKQYPFVCTLCNKGFKLPSSLTSHMKIHLEDRKHICNQCGSVFKCNVCEKVFTRNGDLKRHARMHSGEKPYECMLCNNKFASVSNQRAHTNNYCKSNPNIIRKNAAKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01164000;
90% Identity
iTF_01164269;
80% Identity
iTF_01164000;