Basic Information

Insect: Pedicia rivosa
Gene Symbol: -
Assembly: GCA_963082725.1
Location: OY720152.1:27505879-27520184[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.017 15.8 3.4 1 23 245 267 245 267 0.98

2 11 0.0036 0.2 12.5 9.6 1 23 273 295 273 295 0.95

3 11 8.5e-05 0.0047 17.6 6.5 1 23 301 323 301 323 0.98

4 11 0.00016 0.0089 16.7 1.5 1 23 329 351 329 351 0.95

5 11 6.4e-06 0.00036 21.1 0.8 1 23 357 379 357 379 0.97

6 11 7.5e-06 0.00042 20.9 0.1 1 23 385 407 385 407 0.97

7 11 7e-05 0.0039 17.8 1.4 1 23 412 434 412 434 0.97

8 11 0.0011 0.059 14.1 0.2 1 23 440 463 440 463 0.95

9 11 0.0025 0.14 12.9 0.1 3 23 520 540 518 540 0.97

10 11 0.11 6.1 7.8 6.2 1 23 610 632 610 632 0.95

11 11 3.6e-05 0.002 18.8 4.3 1 23 642 664 642 664 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.017	15.8	3.4	1	23	245	267	245	267	0.98
2	11	0.0036	0.2	12.5	9.6	1	23	273	295	273	295	0.95
3	11	8.5e-05	0.0047	17.6	6.5	1	23	301	323	301	323	0.98
4	11	0.00016	0.0089	16.7	1.5	1	23	329	351	329	351	0.95
5	11	6.4e-06	0.00036	21.1	0.8	1	23	357	379	357	379	0.97
6	11	7.5e-06	0.00042	20.9	0.1	1	23	385	407	385	407	0.97
7	11	7e-05	0.0039	17.8	1.4	1	23	412	434	412	434	0.97
8	11	0.0011	0.059	14.1	0.2	1	23	440	463	440	463	0.95
9	11	0.0025	0.14	12.9	0.1	3	23	520	540	518	540	0.97
10	11	0.11	6.1	7.8	6.2	1	23	610	632	610	632	0.95
11	11	3.6e-05	0.002	18.8	4.3	1	23	642	664	642	664	0.97

Sequence Information

Coding Sequence: atgtGTGCGGCACAAAGTAATCCCACAACAAATTTTGGGTACACCTGGGGTTTTGCGGATAATCCCCGGGCTGAATCAGTCGTCGAAATCTCACCTAATATTAATTATACGGTGAGTGAACCGATGCCATACTTGCAGTTAACTGATAGCGGTGGTTTAACTGTCCAAAAAGATTCAAAAGGTGCGATTACACATACAAATAAAGGAGGTGTTGTACGACGAATGTATGTTGTTAATGATTCATTTCCACAAGGAACAACACAAAgAGTTATAACTACAGGATCACCATCGGTGACAACACATAAAAAACATGATGTCCTAAGTATGGGATGtgataaaaattgtaattTTCAATCAGATCAATCAAATCATTCAATCGCAAATGGTATAATTGATACAAAATCACAAACAGTTTTAACAACAAGCGGTAAAACAACACATTTTATGAGTCCTATTGGACCACTTCAGTTAACCGCTGAAGAatgtaatgaaattttaatgaaacgTGCAATGGCATCAGCACAACAAAGTCAgcatacaataacaacaaccagTGATGGACATCATGCtgGTATATCCGTACAAGTACAAAAAGTAATTCAAGGTCTTGAAGATGCTGAAGATTCACAAGCAACATCATCCACACACTGTAAATTAGAACCAGTTCTAAGTATTTCACCAAAACTCGAGAATGAGGGCACACCTAATCCAACAACACCAAAAGAACGCCCTTATTCTTGTGAAGAATGTggtaaatcatttttattaaaacaccATTTGACAACTCATGCTAGAGTTCATACAGGTGAGCGTCCTCATATATGTGTCCATTGTGGTAAAAGCTTCGCACATAAACATTGTTTAAATACACATTTATTGCTGCACTCAACTGATCGGCCATATCAATGTAATGAATgtaaaaaaagttttacatTAAAGCATCATTTGCTGACTCATTCAAGAgTTCACAGTCGTGATAGACCTTTCATATGTCCCGAATGTGGACGTTCGTTTCCTTTAAAAAGACACCTAGTGACTCACAGTAAATTTCATGCTGGTGAACGTCCATTTGTTTGTGAAGATTGTGGTGAAAGTTTCGCACAAAAGGACCATTTAGTAATGCATTCTAGATTTCATGGTTCATTAAATCCATTTGCATGTCCCGATTGTGGTGCAACATTTCCACGTAAATTTCAATTGGTCAACCATGGACGTATTCATGGTCGTGTACCACATTCTTGTACAATTTGTGGTAaagaatttttacaaaaacgtACACTCGTTGCACATATGCGATTACATACTGGTGATCAACCATATCCTTGTACCGCATGTGGGGAAGGTTTTCGCACAAAAGCTGAAATGAATCAACATAATCGATTACAACATGGTGGTCTCAATCCAAATTCAGCAAACACAACAATTGTAACAAATGTTGTCCAACAAAATCAgcatcatcaacaacaacaaacagtaACTGTTGTTAGTAACTCAAATAATGGTATGGTTATACCATCAGCATCAACTCCTGACACATCACCACGACCACAATATGGATGCAGGGAATGTGGAAGTGCCTTTAATAGTCGAGAAGCATTGGCTTTACATTTGCGTTTGCATACTGGTGATAAAGGTTTAATGACAGATTTATGTGCGCTTACTGCCGCTATACCTGGACATTTCTTAAACACCAATCTCAACCAAgtTCCAGTACAAATAATAACATCATCAGGTCAAGTTGTTAGTCAAACAATGTCTGTACAAAGTCCACCACATCAGACAACTACTGTTGTTACATCTGTACCACCACAACAAAAACCGAAATCACATTTTTGTACAAGTTGTAGTAAAGGATTTGCCTCTAAACATGGTTTGTTTCAACATAATAAACGTCATCCAAATGGAGGTTGTGCAATTAGACAACACGTTTGTGATAATTGTGGTAAAGCATTCTTccaaaaaaatcatttaatgtTACATCAACGACAACATTTAGAGACTAAACATAACATTGGACAAAATCAACAACAgcaacaacaacaacagcaacagcagcagcaacaacaacagcagcaacaacagaATCAAATGAATCAACAACTTGGTCAATCACATAATCATCATTCACTAACAACACGTGAATTAGTAATCAGTAATCAACCTGTACAAGTACAAGTTTTACAAGGGAATACTGCACAGGTGATCAAATACGAAATAAATATCCCCCAAGATTCACATCAGTCAATTGAGTGA
Protein Sequence: MCAAQSNPTTNFGYTWGFADNPRAESVVEISPNINYTVSEPMPYLQLTDSGGLTVQKDSKGAITHTNKGGVVRRMYVVNDSFPQGTTQRVITTGSPSVTTHKKHDVLSMGCDKNCNFQSDQSNHSIANGIIDTKSQTVLTTSGKTTHFMSPIGPLQLTAEECNEILMKRAMASAQQSQHTITTTSDGHHAGISVQVQKVIQGLEDAEDSQATSSTHCKLEPVLSISPKLENEGTPNPTTPKERPYSCEECGKSFLLKHHLTTHARVHTGERPHICVHCGKSFAHKHCLNTHLLLHSTDRPYQCNECKKSFTLKHHLLTHSRVHSRDRPFICPECGRSFPLKRHLVTHSKFHAGERPFVCEDCGESFAQKDHLVMHSRFHGSLNPFACPDCGATFPRKFQLVNHGRIHGRVPHSCTICGKEFLQKRTLVAHMRLHTGDQPYPCTACGEGFRTKAEMNQHNRLQHGGLNPNSANTTIVTNVVQQNQHHQQQQTVTVVSNSNNGMVIPSASTPDTSPRPQYGCRECGSAFNSREALALHLRLHTGDKGLMTDLCALTAAIPGHFLNTNLNQVPVQIITSSGQVVSQTMSVQSPPHQTTTVVTSVPPQQKPKSHFCTSCSKGFASKHGLFQHNKRHPNGGCAIRQHVCDNCGKAFFQKNHLMLHQRQHLETKHNIGQNQQQQQQQQQQQQQQQQQQQQNQMNQQLGQSHNHHSLTTRELVISNQPVQVQVLQGNTAQVIKYEINIPQDSHQSIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -