Priv002664.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720151.1:34824097-34831017[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0018 0.098 13.4 3.2 1 23 361 383 361 383 0.98 2 17 0.021 1.2 10.0 0.2 2 21 417 436 416 437 0.93 3 17 5.9e-05 0.0033 18.1 0.6 1 23 614 636 614 636 0.98 4 17 5.3 2.9e+02 2.5 1.8 1 23 641 665 641 665 0.79 5 17 0.0011 0.062 14.1 0.8 1 23 900 923 900 923 0.97 6 17 0.00031 0.017 15.8 2.8 1 23 929 951 929 951 0.98 7 17 0.0005 0.028 15.2 4.2 1 23 955 977 955 977 0.98 8 17 0.0036 0.2 12.5 0.8 2 23 986 1008 985 1008 0.97 9 17 0.0099 0.55 11.1 7.6 1 21 1013 1033 1013 1035 0.96 10 17 0.0016 0.091 13.5 6.2 1 23 1043 1065 1043 1065 0.97 11 17 0.00012 0.0066 17.1 2.4 1 23 1071 1093 1071 1093 0.97 12 17 0.00077 0.043 14.6 2.1 1 23 1099 1121 1099 1121 0.98 13 17 1e-05 0.00058 20.5 2.0 1 23 1127 1150 1127 1150 0.94 14 17 0.00082 0.046 14.5 0.4 3 23 1161 1181 1160 1181 0.98 15 17 0.00041 0.023 15.4 0.1 1 23 1190 1212 1190 1212 0.96 16 17 0.0022 0.12 13.1 4.5 1 23 1219 1242 1219 1242 0.94 17 17 0.063 3.5 8.5 1.9 3 23 1263 1283 1261 1283 0.92
Sequence Information
- Coding Sequence
- ATGAATTTAGATATATGTTTTAAGGCTATTTCTGtgttacaaaataatttacaaacaGTAGAAAAcgTGTGTAACATCTGCGGTGGTAAACATTACACACAAAATTGTCCTGATTTAACACGTGGGAAGCATGTGCATGATACACCACAACAAAATATGTCTCGTTCATCAGCCCCATCAGGAATTTATATTATAGAAACAAATGATGGAACACGTGTTGTAACATCACAAAAATTTGCAAAAGGCTGTCGATTTGGACCATTGCTGGCTGAAAAATCGTATATGCCATTGGAAAATACCAAATTTccattaattatatttcaaaatCCAGTTTACAATAATGATGATCCTGAGTTTGAAAATCTTTTTagtataagaaatttttatttagatacaaataatgaaaatatgtgTAATTGGATGATACATGTAACACCAGCTAAATACtcaaatgaacaaaatttaatgtgttttcagcTTCACAACCAAATATATTATACAGCGATACAGGATATTGACGTTGGTGATATATTGAAAGTTTGGTATGCACCTAATTATGCATCAAAAATGAATACAGAACTTTTACAAACGAGTCcatatgaaattaataataatatacggCAAGTATCAATAAGTACTTATGATACAATTGTTGAAGATAGTATCAGTCAATTTccgaataataaaaatgataataaaataacagaagTCTCTTTACCACCAATCAATAGTTTAATGCGTTTATCATCACAAGATTTTTCCTTTGagacaaacaataatttatattctagtTATCAGAATTATAATCCAGAAAGTCCACAACAAATTTACGATACTACAGTTGCCAATACATCCTTATGTTCCTTTTCAGTTGGAACagatgatttaaataatttatttatgaatagtTGTTCAGAACTATTTAATTGTTCATTTGAATCAAGTTTTGCAAGTGATTTTGATGATGGTTTCGATACTGTATTTCCATCTCATAATCTGAATGTAATACAACATACAAGTACaccaaataaaacaaagaaaaataaaaatggcaaTGGCAATAGATTAAGACCAGCAAcatattattgtaaaatatgtaataaatcATATGTTGCTATTTGTAATCTTTATAAACACATGCAGCAACATGATCTATATTTGTGCAGTTTATGTATGAAGagTTTTGAAACATTGGATATATTGAAAGATCATAATTGTCCAAATAAATCATCAAATAGTGAAGATTCAACATGTTCAGTTTGCTTTAAAGTATTGTCAAATTCATGGTCACTTGCCCGTCACGCCAAAAAATGTATCAACAAAGATTTGCCTTTAAGtgaaaataataattcatccatggaaaaaaaattaatagagacaaataacaacaatagtGATCTATTTTATGaagatttagaaaatttacCAGAAGAAAATTCCTTTTTGGACAATGAAAATAGTTTcgatcaaacaaaaataaatattgcaaAAGAATCGATTCCTCCTCTTGTCAAAATTTCACCCGAATCAGATTCAACATTATCATCGATTGATATAATCTCAGTAAGAACACCAGTGAAGCCTTCAGTTGCACGTGCGTTAGCatctaaattaaatcaaaagaaagcaataaataatgttattgATCATGAACATAATTcccaaataaattttgatcaaaatggtttaattatgaatgttaaatcaaagaagaaaataagacAAGAAGAGAACGATGAAATGCAATTAATGGATGTTAATAATagtgttaataaaaataaaaaaactaaaataaaaaaagtttctgTTAATCGTAATACTACTGAAACTTTGCGTCCATTTAGttgtaatatttgtaataaagcATATGCCAAAAAAGATGGCCTtcttaaacataaaataacacATGAAAATCGTCATTTTATATGTACATTTTGTTCACATAGTCCACTTAAATCAAGTGATTCATTACGTAGACATTTGAAAGCTAATCATCTTGATCAACAAGAAATTTGGCGTAAAAAAGGATTTatcaattcatttattataaaagatccagattttataaaaaaacaaataaaaatagaagattCTATGGATATGACAACGATTATAAAAATGGAGCCAATTGATGATGAAGATAAGACtacacaaaatcaaaataatataatagaaaataatatagaaactgatttaTTTCAGTCAAACAACACAACTGCAGAAAAATTTGATGTAAAGGATATTGACAAAAATCTGATTCTAAATGTTTGTAGAATTTGTTTTCGCATTAAACATGAAATGTATCAAATTGAATTCGATGGAGAACAACATATTCCAtgtttatttgaatatttaacaTGTTTAGTTatgGAATCATCTGATATTTATCCTAAGACCATATGTAAATCATGTTATGAGAATTTACGAAAGGCATCTGAAATAcggaaattatttattgattcatttgaagaattgaaacaatttttaatgcaaCCAAATATTAAAGATATTGAAAGTGAATGCATTGATTCAGATTTTCAATATGATGCCTCTGAAGAACAAATAGTCACAATTGAAGATATACAAACTACAGAAACAGatattgaaataattcaaaattttaaagaatgtgaaaataatgttccagttgaaaatattaaaagtaaaattcgAAAAAGTCGAACATTACAAAAGCCTCATGAATGTGAATATTGCAATGAAGgaTTTATGAAAAAGTCATCACTCGGTGTACACGTTCGTATAAAacatacaaaagaaaaaatttataattgtgaTAAATGTGAGAAATCATATTCCGTTTTTCGTGATTTAAATCGTCATAAAAAGACACACAGTGAAAAATATACTTGTCCTCATTGTAAAAAGGATTTTTCATTTCGTCAATCTTATAAAACACATTTAGAAATTCATAAACGAAAAGATgggaaaaattcaaaatgtgaAGTATGTGgacaatattttaaagatgaaaaattaaaaattcgtCATATTAAAAGTAATCATACAAATGAAGAATATACTTGTGATCATTGCCAAAAGATTTTTTCAcatattacaaaattaacaCAACACATGAAATGTCATCGTTCTTATGatgaaaaaagttttaaatgtAGTTTATGTCCGAAACGATTTAATTTTAGTCATCATTTAGCAAACCACGAACGTTTTCATTCAGGGTCTCGTCCATTTATATGCAGTATATGTGGAAATCGTTTTACACAATCCCATTTCTTAACTGTACATTTAAGACAACATGATAAAAGTTCCtcttataaatgtaaaatatgtacaaaaatattttttagtgaATGGCGTTTAAAACGACACGAACAATCACATAAAggtgagaaaatatttttatgtacgAAATGTGGAAAACAATTTACAATGAATTCATCCTTAAAACGAcatattgaaaaaaatcatAGTGAGGAATCaaatagagaagaaaatttatgtcGTGTCTGTAATATTACTTTTGATAATGAATCTGATTTTTCACAACATATGATAACGCATAGTCTAATTAAAAGTAATTGCAAATTTCTTTGTAACATTTGTAATGTTGAATTTGAATTAGAATCATTATTGGAAGCACACATGAAAacacattcaaataaaaagaaagtatTTATCTGTGAAatttgcAATCTTTCTTATAATCATTCAGAACACTTACGTTCTCATATTAGTGAATGTCATTCAAATCCAAATGAACTTGAAAACAATGTATATGCAGAAGTCAAATTAAAGtcttatttatgtatttactgtaaaaaacaatttgataCGACAACTCAGTTAAACATGCATAAAAAGATACATAAGAAACCAAAACCACAAAGAgATCTACAAACATTTTCAtctacaaatttaataaatcgtATGGTAATTGTAACAGAAACACctgaaacaatttatttacaaaaatccGATACTCAAATACTTTTATTTGAtgacaattga
- Protein Sequence
- MNLDICFKAISVLQNNLQTVENVCNICGGKHYTQNCPDLTRGKHVHDTPQQNMSRSSAPSGIYIIETNDGTRVVTSQKFAKGCRFGPLLAEKSYMPLENTKFPLIIFQNPVYNNDDPEFENLFSIRNFYLDTNNENMCNWMIHVTPAKYSNEQNLMCFQLHNQIYYTAIQDIDVGDILKVWYAPNYASKMNTELLQTSPYEINNNIRQVSISTYDTIVEDSISQFPNNKNDNKITEVSLPPINSLMRLSSQDFSFETNNNLYSSYQNYNPESPQQIYDTTVANTSLCSFSVGTDDLNNLFMNSCSELFNCSFESSFASDFDDGFDTVFPSHNLNVIQHTSTPNKTKKNKNGNGNRLRPATYYCKICNKSYVAICNLYKHMQQHDLYLCSLCMKSFETLDILKDHNCPNKSSNSEDSTCSVCFKVLSNSWSLARHAKKCINKDLPLSENNNSSMEKKLIETNNNNSDLFYEDLENLPEENSFLDNENSFDQTKINIAKESIPPLVKISPESDSTLSSIDIISVRTPVKPSVARALASKLNQKKAINNVIDHEHNSQINFDQNGLIMNVKSKKKIRQEENDEMQLMDVNNSVNKNKKTKIKKVSVNRNTTETLRPFSCNICNKAYAKKDGLLKHKITHENRHFICTFCSHSPLKSSDSLRRHLKANHLDQQEIWRKKGFINSFIIKDPDFIKKQIKIEDSMDMTTIIKMEPIDDEDKTTQNQNNIIENNIETDLFQSNNTTAEKFDVKDIDKNLILNVCRICFRIKHEMYQIEFDGEQHIPCLFEYLTCLVMESSDIYPKTICKSCYENLRKASEIRKLFIDSFEELKQFLMQPNIKDIESECIDSDFQYDASEEQIVTIEDIQTTETDIEIIQNFKECENNVPVENIKSKIRKSRTLQKPHECEYCNEGFMKKSSLGVHVRIKHTKEKIYNCDKCEKSYSVFRDLNRHKKTHSEKYTCPHCKKDFSFRQSYKTHLEIHKRKDGKNSKCEVCGQYFKDEKLKIRHIKSNHTNEEYTCDHCQKIFSHITKLTQHMKCHRSYDEKSFKCSLCPKRFNFSHHLANHERFHSGSRPFICSICGNRFTQSHFLTVHLRQHDKSSSYKCKICTKIFFSEWRLKRHEQSHKGEKIFLCTKCGKQFTMNSSLKRHIEKNHSEESNREENLCRVCNITFDNESDFSQHMITHSLIKSNCKFLCNICNVEFELESLLEAHMKTHSNKKKVFICEICNLSYNHSEHLRSHISECHSNPNELENNVYAEVKLKSYLCIYCKKQFDTTTQLNMHKKIHKKPKPQRDLQTFSSTNLINRMVIVTETPETIYLQKSDTQILLFDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -