Priv015428.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720155.1:3137438-3141892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.3 3e+02 2.5 0.8 1 20 44 63 44 67 0.81 2 20 0.019 1 10.2 1.4 2 23 97 119 96 119 0.93 3 20 1.5 82 4.2 0.1 3 13 243 253 241 255 0.89 4 20 0.026 1.4 9.8 0.6 3 23 269 290 263 290 0.90 5 20 0.18 9.8 7.1 0.5 3 23 535 556 534 556 0.96 6 20 0.78 43 5.1 5.7 2 23 566 588 566 588 0.96 7 20 0.0019 0.11 13.3 0.6 1 23 600 622 600 622 0.98 8 20 0.017 0.94 10.4 1.1 3 23 671 692 669 692 0.90 9 20 0.0053 0.3 11.9 1.6 1 23 703 726 703 726 0.97 10 20 0.002 0.11 13.2 0.8 2 23 769 791 768 791 0.95 11 20 0.63 35 5.4 2.9 1 23 801 824 801 824 0.89 12 20 5.7e-06 0.00032 21.3 1.0 1 23 830 852 830 852 0.98 13 20 6.9e-05 0.0039 17.9 0.3 2 23 859 880 859 880 0.97 14 20 2.5e-07 1.4e-05 25.6 2.0 1 23 885 907 885 907 0.98 15 20 0.00053 0.029 15.1 3.0 1 23 913 935 913 935 0.97 16 20 2.2e-06 0.00013 22.5 2.8 3 23 943 963 941 963 0.97 17 20 2.4e-05 0.0014 19.3 2.7 2 23 970 991 969 991 0.97 18 20 5.6e-05 0.0031 18.1 0.7 2 23 998 1020 997 1020 0.92 19 20 6.4e-06 0.00036 21.1 1.7 1 23 1026 1048 1026 1048 0.97 20 20 0.54 30 5.6 1.1 2 23 1055 1077 1054 1077 0.94
Sequence Information
- Coding Sequence
- ATGAATCAAAAAGTGGACGAAATTGTGGAGATGGGTGGAGATTTAATGctATCCAGTGTTAAAACAGAGCAAGTCTCTTCTCTAATTCCAGAATTTGGTCTTGATTCTAGTCAAATCCAAGGTACCAGTTTTAGTTGTAACTTCTGTGATGATAAATTTACAAATCGATTAAAAATTGCAATGCATTATGTTCTTAATCATCAGCTGCGATATTGTTCTATATGTACAATATTGTTTGCAAGCGATTATGATAAAGAAATACATGAAAATAGCACTCATTACCCATTAAAGTGTACAAATTGTAGGCAAGAATTTTTTGACAATAAAATGCTTAAAAATCACTATGCCAATGAACATTCCATAAAACTATGTGATTTTTGTCCTACAAGTACAAGTATTGAACAATATCCAACACATGTAACACGAAGACATGCCATTCAAAATACTGAAGAATTTGGGAAACCAGaggaaatatttcaaattgatagaaataaattaacatatttatgttttatgtgtttaaaaggaaaaaaattaacagaaatttTTGGTCATTATGTTTTCTATCATAATATGTcaataaattctgttttagAATATGCCACAAAATATTctgatattttaaaaatagatgGAGCAACTTCAAAGCCAATTAACGGGTTTAATTGTCAACAGTCGTTAACATTATCAAaatcttcaataaaaataatttctgaaACGGATATTTGTGGTATTTGTAATCGTCCATTCTCTGATAATGCACCAAAAATCGGACAtgatattttttgtaaagGTTTTCTTCCTTGTATCGAATGTGATAATATATTTAGTGATCCAAAAACTCTAAATGaacatacaaatacaaaacataaaGATATTCTATGTAAATTTGGGTGTgaagttaaattaaatctaaatgaTATACAATCCCATATACAATTAATTCATGATATAACAGCTTGTATACTTTGTGGCCTTGTAACATCATCTTGtagtaataaattaaattcacatttaaaggaaaaacataatgttgatttacaaatttatgaaaaatgtgATAACAAGAATGGACTTTATCGAGTTGAAGGTAAACAATCTAAAAAagttttatgtaatttttgtaaCAATGATATAACACAAGCAATGGATGATCTTTGCAATTTAATATCACATTATGAATCTGTTCATGGTTGCAATAAAAATGCAATGATTAAGAAACTTGAAAAAAATCCAATActtgatttattaattaaacaacGTAGAATTAATATTCCTGTTGAATCAAAACCCTTAGTTGATTaccttaaatattttcaagaaCTTTCTTGTTTtgagaaaaaacaagaaccaACAATTGAGAAAAGTATTGAAGAATTTGATACAAATCTAATATATTGTGTAGCTTCTGATACTTCAGACGATGGTTTATCTGataatgaagatgatgataCAGACACTGgagaaattgttaaaaaacaaagtaatcTAAATGATGAAATATTAGAGGATTCATCTAGTGAAGAACCAATCGAAAGTGTATTACAAACagatgataataatataaagcaaaacaaaagaactaaaaaatttgtgggaatttgtcaattttgcgGTTCAAAGACTATGACTGTAAGATCATTGTTTGCGCATATGCAAACTGTTCATGgctttgaattaaaaaatatcgaGCCAAGATGCAGCCTCTGTAAAATTGAGTTTTCGACTGTTCACTGTCTTGCAAGACATAATAAAAGAAAGCACACACCGATTActtcatcaaataaaaaggGTTTTTACGAATGTCCATTTTGTACAATTGAATCAAAAACCAAAGGATCCATGaggaAACATATTAAAGAGCATGTGGAAATTTATACAGCAACATGTTCATTAGAATCCATTGGTTTTAAGTGTCGTTATTGTGTAGATTTATTTTGGTCTGCCGAACAACGTAATAATCATCATATTGAAAAACATTCAAACGAAAATGGTGAAGAAATAATGATATGTTATCTGTGTGGTAGTATCTTTATTAGTAAGtcttGTTTAAGACGACACGTTACAGAAAATCAtccagaagaagaaaaaatgggtcatgtcatttttaaatgttctttatgtaaaattacatatacaaatattaaatccGTATCTAGACATATGACAAAAGTTCATCCAGATAGTAAATCATTATATTGTAGTGCGAAATCATGTAAAATGAAGAttggaaattatttagaattagaACAACACTATgatgaaTATCATTCAAAACCAACAACTCATAAGGAGGCATCACTTAAATGTACTGTTTgtgaaaaatcttttaaaaatgaGACGTCAGCTATAAGTCATTATCAAAGTTCACATGagaataagaaacaaaaaatgagaGGCTTTAAATGTCGATTATGTGAAATGGAATTTCGGACAAGTGATGATAGgAAATTGCATTGTCTTACGGATCATGTAGGTGAAAAAGTTTATAGATGCACAACTTGCGAAAAAGGCTTTAGTAATAAAAGTGGCCTTTACACACATATTCAAATTCATTCAACAGCTCATCAAAGATCATGTCCTTATTGTGCAAAAGTTTTTAATAGAAAAGATTCATACAATGAGCATTTATTGATTCATCAAGGTCCACAACATCAATGCGCCTATTGTCCTAAAACCTTTGTTCAACGATCGAATTTAATTCGTCACACCAGAATTCATACTGGCGAGAAACcgtaTAAATGCACATACTGTGACAAAACATTTAGTGATCGTGGTGCTTGTAGTTCACATGAAagAGTACATACTCGCGAAGAAGTTTCCAACTGTCCATATtgtaataaaagtttttcgaaaaaacaaaaacttcgTTATCATATAAGAACACATACAAAGGAAAATCTTCAAACATGTGATATTTGCTCGAAAAGTTTTACAAATTCGCATAGTTTAAAAGTACATAAAATGATACATGATCGTGTTACATCAATTCCATGTAAAGAGTGTTCAAAAACATTTagtaatgaaaaatatatgaaacGACATATGACTGCTGTTCATATGAAAAATTCTGaaTTTGCGTGTCATGTCTGTGGAAAAAATTTCGGTAATAAATCACAAATGAGAGAACACTTGATGACGCATGGTTCTGGCAAACATATTTCGTGTCTTTTATGTGATTTCCAATGTTCAAGTGCAAAAAATGCTCGTAcgcatttaataaaaatccatGGTATTGATAAAGAACAAACACCATTAcgtgattttatttatataaaaacaccAGAGGAAGAAGGAATTTTACCAACAACCTCTTCAAATAtaactaatttaaataatgattgtgttaataattatatagatATAGATGACAATGATGAGGATGCTtatgaagatgatgataaaaatatgGATGATGAATCATCTTCTATGGCCGATTATTTACAACCAGAAGTTATATTAGAAAGTggtaataattaa
- Protein Sequence
- MNQKVDEIVEMGGDLMLSSVKTEQVSSLIPEFGLDSSQIQGTSFSCNFCDDKFTNRLKIAMHYVLNHQLRYCSICTILFASDYDKEIHENSTHYPLKCTNCRQEFFDNKMLKNHYANEHSIKLCDFCPTSTSIEQYPTHVTRRHAIQNTEEFGKPEEIFQIDRNKLTYLCFMCLKGKKLTEIFGHYVFYHNMSINSVLEYATKYSDILKIDGATSKPINGFNCQQSLTLSKSSIKIISETDICGICNRPFSDNAPKIGHDIFCKGFLPCIECDNIFSDPKTLNEHTNTKHKDILCKFGCEVKLNLNDIQSHIQLIHDITACILCGLVTSSCSNKLNSHLKEKHNVDLQIYEKCDNKNGLYRVEGKQSKKVLCNFCNNDITQAMDDLCNLISHYESVHGCNKNAMIKKLEKNPILDLLIKQRRINIPVESKPLVDYLKYFQELSCFEKKQEPTIEKSIEEFDTNLIYCVASDTSDDGLSDNEDDDTDTGEIVKKQSNLNDEILEDSSSEEPIESVLQTDDNNIKQNKRTKKFVGICQFCGSKTMTVRSLFAHMQTVHGFELKNIEPRCSLCKIEFSTVHCLARHNKRKHTPITSSNKKGFYECPFCTIESKTKGSMRKHIKEHVEIYTATCSLESIGFKCRYCVDLFWSAEQRNNHHIEKHSNENGEEIMICYLCGSIFISKSCLRRHVTENHPEEEKMGHVIFKCSLCKITYTNIKSVSRHMTKVHPDSKSLYCSAKSCKMKIGNYLELEQHYDEYHSKPTTHKEASLKCTVCEKSFKNETSAISHYQSSHENKKQKMRGFKCRLCEMEFRTSDDRKLHCLTDHVGEKVYRCTTCEKGFSNKSGLYTHIQIHSTAHQRSCPYCAKVFNRKDSYNEHLLIHQGPQHQCAYCPKTFVQRSNLIRHTRIHTGEKPYKCTYCDKTFSDRGACSSHERVHTREEVSNCPYCNKSFSKKQKLRYHIRTHTKENLQTCDICSKSFTNSHSLKVHKMIHDRVTSIPCKECSKTFSNEKYMKRHMTAVHMKNSEFACHVCGKNFGNKSQMREHLMTHGSGKHISCLLCDFQCSSAKNARTHLIKIHGIDKEQTPLRDFIYIKTPEEEGILPTTSSNITNLNNDCVNNYIDIDDNDEDAYEDDDKNMDDESSSMADYLQPEVILESGNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -