Basic Information

Insect: Pedicia rivosa
Gene Symbol: -
Assembly: GCA_963082725.1
Location: OY720151.1:535923-539928[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.2e-05 0.0023 18.5 0.7 1 23 162 184 162 184 0.95

2 15 0.0016 0.089 13.6 2.2 1 23 190 212 190 212 0.97

3 15 0.00028 0.016 15.9 0.2 1 23 305 327 305 327 0.98

4 15 0.0001 0.0058 17.3 0.5 1 23 333 355 333 356 0.96

5 15 0.00018 0.01 16.6 7.2 1 23 386 408 386 409 0.96

6 15 0.0088 0.49 11.2 0.3 1 23 422 444 422 444 0.94

7 15 2.5 1.4e+02 3.5 0.1 2 23 451 473 450 473 0.85

8 15 2.5 1.4e+02 3.5 0.7 3 19 482 498 481 499 0.94

9 15 0.00013 0.0074 17.0 5.9 1 23 508 530 508 530 0.96

10 15 0.17 9.7 7.2 0.3 2 23 536 557 535 557 0.96

11 15 1.3e-05 0.00075 20.1 0.4 1 23 565 587 565 587 0.98

12 15 0.00035 0.02 15.6 0.2 3 23 595 615 593 615 0.97

13 15 7e-05 0.0039 17.8 0.5 1 23 621 643 621 644 0.95

14 15 0.011 0.6 11.0 0.2 1 23 658 680 658 680 0.97

15 15 0.0011 0.059 14.1 0.1 1 20 1052 1071 1052 1074 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.2e-05	0.0023	18.5	0.7	1	23	162	184	162	184	0.95
2	15	0.0016	0.089	13.6	2.2	1	23	190	212	190	212	0.97
3	15	0.00028	0.016	15.9	0.2	1	23	305	327	305	327	0.98
4	15	0.0001	0.0058	17.3	0.5	1	23	333	355	333	356	0.96
5	15	0.00018	0.01	16.6	7.2	1	23	386	408	386	409	0.96
6	15	0.0088	0.49	11.2	0.3	1	23	422	444	422	444	0.94
7	15	2.5	1.4e+02	3.5	0.1	2	23	451	473	450	473	0.85
8	15	2.5	1.4e+02	3.5	0.7	3	19	482	498	481	499	0.94
9	15	0.00013	0.0074	17.0	5.9	1	23	508	530	508	530	0.96
10	15	0.17	9.7	7.2	0.3	2	23	536	557	535	557	0.96
11	15	1.3e-05	0.00075	20.1	0.4	1	23	565	587	565	587	0.98
12	15	0.00035	0.02	15.6	0.2	3	23	595	615	593	615	0.97
13	15	7e-05	0.0039	17.8	0.5	1	23	621	643	621	644	0.95
14	15	0.011	0.6	11.0	0.2	1	23	658	680	658	680	0.97
15	15	0.0011	0.059	14.1	0.1	1	20	1052	1071	1052	1074	0.94

Sequence Information

Coding Sequence: ATGGAGGAAGTTGAAGTTGAATCTTTTGATATTGAGTGGGTTGGAGATAATGATGTTCAGCAAGAAATTGTCAATGCAGAAGATCTAGACAGAACGAATTCAGAGAGCacagatgaagaagaagaatatttagTAGGAGAAGAAATAATTCCTACATCGGAAATAAATTCGATTCCCAATAGTTTGGATCATATAGCAgctgaaaatttaatatatatggCTCATGATGGGAATGCAACAAATATGGGTGATTTAATTGAAGAACAAGTTGAACAAGTCGAAAATGCAGATTATAATGAACAACAGTTTTTTGAATGCCAAGTTACAGAAGAAGTTATAACTGATGATTGGGTTCAACAACAAGGAGAAGaaagAGTGGAAATTCCGGCAGATCAACTTTGTAGTTCTATAACCGAAACACAACTTGAGGAAATTGATGTTCCACTACCAACTGATCAAGATGAGTATACATCATCACGACCATATCCTTGTGATTTCTGTAGTCGAAGATTCCGTAAAAAGGCAAATTTAATGAATCATATGGTTGCTCATCAAAATGATAGACCTCATGTATGTAATTTATGTGGGGCAAGGtatataagaagatgtgatttattaaatcatttaaaaatacatGCTTATGTTCCTGATGATGAAACCGAGGAGAAtgtttatttttcagaaaATCAAGACCAAAAAACTAAGAAACGTAGCGGaaatttttctgaatttaCAGCTGGAAGTAAACGATTAAAAAGTTCAACGaaatcacaaaaaattaaaaatatcaaaattgaGCCAAATGATAATGTAAAGTTTGTTGATATGAGAAACATTGCGGAATCtgcaaatgaaaattatgagGAAATGCAGGACATTGAACggtATCCTATAACAGATCCAAAAAAACCTTTTGTTTGCCAACATTGCGGTGTTGGATTTGCTAGAGAAAAAGCTTTAGCATCACATTCCAgaATACATGGGGGGGATTCTCCTTTCGAATGTGATACTTGTGGTGAAATGTTTTGGGATCCCAGTTTGTTGAGAGATCATCAAAAAATGCATCATCAAATACAAGGAACTGATTCTGAATTTGAACCAGATAATGaggttaatGAAGATACTGAATCTGATACTGATTCTAAATTTGGTGAATTTTATTGTGACATATGTGGAATGTCTTTTCATCGACATGATTTACTTAGAAGGCATTCAAGAACACATcacattaaaaaagaaacaattgatGAGGATTCTGATGGGCACTGTTGCAATGTATGTGGTGAAAATTTTACAGAAGCATTAGATCTTTTAGCACACGCTGAAGTACATGCTAGATTTCAAGCactaaaATGCATGCTTTGTGGTGAGACATTTTTAGAAGAAACTggaattaaaaatcatttaaatataaCTCATTCACATGAAATGACTGCAAATTCATGTCGCTTATGTGGCAAATTATGTCGTGACGGGCGTACACTAATAAAACATGCCTGGGACCATTCcagagaaaaaaatcattcttGTTCAAAATGTGGCAAAACATTTCACAATAAAGCAAGaTTAAAACGTCATATGGTTTCACATCGCAATAAATCTGTGTCTTGCGATATTTGTGGTGATGATTTTCCTGATGGGCGTTCTTTGATGAATCATCGACATTCACATACAAATGTTACTGGACGCCAGTTTCCATGTCGTGAATGTGGTAAAACATTTGGTTCCCGTAGTTCACAACAAATTCATATAAGAATTCACACAGGgGAAAGACCGTATGGATGTAAATATTGTTGGAAAGCTTTTGCGGATGGTGGTACATTAAGAAAACATGAAAGAATTCATACagGTGAAAAACCGTATGCCTGTTCTGTTTGCCCACGTGCATTTAATCAACGTGTTGTACTTAGAGAGCACATACGCTCGCATCATTCCAGCCCTGACTCAAAACGTGGAAATCTTATAACACCATATTATTGTACAGTATGCCAAGAACTGTTTGTTTCTTCATTGGAATTAATTCAGCATTTAATACAACACTCAGATATGAATACAGCATTAAAACGACAGCCCTtaACTGGACCACGAAAATATAAACGCCGTCGAAAACTTAAGCCACATGAATTAGAACGTTTGAGAGCACAAAAGTCTAAATCAGGAAATGACTTTGATTATAGCGATGAAGAAATATTCTTACCAAATGAGGAGGATCAACTTtctgataatgataataacCTTAGTAAATATTCACGTGTACGGACAAATTCGTCCAATCAAAATAAACGTAAAGTAGTCGAACGAAAGCAAAATTCAATCAAGCAAAGCTCAGATGACAATTTTGAGTCAATGTTACAAAGTTTAACATTACCAAATCTAGATAATATTCCCCTtactaataataaaactacAACTGGAAAAGTCATTGGTAAGAAGAAAGTTAAACTTGACTcattacaacaacaatcatCTAGACCTAAAATGATACATACACAAAAAACACGTATCGCAATTGAAGATGGTAAACGTAAAACAAAAACCTTTATAACACGTACAACTGCTACTAATGACTCATCTGCTGTTAGTGGTTCTCatcaaaatgaaagaaatcgTCCGCGTACTAAAAATGTTAACTATCATGTTTTAGTACATGATAAACTACCAAATGCAACTTTTCCAAATGATATTggtattaataatttattaaatctgAAAGAAGAGAAATTAACATCTAACAATTATGAATATAAATCCAATGAATCTGAAATAAATTTCTCTTATGAATTACCAAGAAAaagtttagaaaaatataatagtgATATTGTAAATGATTTAGAAGAAATACTAAGATCGCCAATAAAAGGTACTTGTTTATTATCCAATGAAGATACTGAAGTTAACGAAGAAAATAATGATGTTAAAAAACAACACATTTCATTACGTCCAAaacgtaataaaaataaattttccttcaAAATTGGACAAGCACCATtattaaaagatgaaaaaaaaacaaatataaaacaggttaaaagaaaatctaataaatGGTCATCGaagaatatacaaaaacaagataatataaaaaatataggtAATTTAGATTATCCAATTGTTGTTAAacaggaaaaagaagaaattataacAGATGAAATATATAGATGTGAAATGTGTTCCGCCGTTTTTAATAATAGATCACAACTTTTAGTGCATGTACCAAttcatatataa
Protein Sequence: MEEVEVESFDIEWVGDNDVQQEIVNAEDLDRTNSESTDEEEEYLVGEEIIPTSEINSIPNSLDHIAAENLIYMAHDGNATNMGDLIEEQVEQVENADYNEQQFFECQVTEEVITDDWVQQQGEERVEIPADQLCSSITETQLEEIDVPLPTDQDEYTSSRPYPCDFCSRRFRKKANLMNHMVAHQNDRPHVCNLCGARYIRRCDLLNHLKIHAYVPDDETEENVYFSENQDQKTKKRSGNFSEFTAGSKRLKSSTKSQKIKNIKIEPNDNVKFVDMRNIAESANENYEEMQDIERYPITDPKKPFVCQHCGVGFAREKALASHSRIHGGDSPFECDTCGEMFWDPSLLRDHQKMHHQIQGTDSEFEPDNEVNEDTESDTDSKFGEFYCDICGMSFHRHDLLRRHSRTHHIKKETIDEDSDGHCCNVCGENFTEALDLLAHAEVHARFQALKCMLCGETFLEETGIKNHLNITHSHEMTANSCRLCGKLCRDGRTLIKHAWDHSREKNHSCSKCGKTFHNKARLKRHMVSHRNKSVSCDICGDDFPDGRSLMNHRHSHTNVTGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCKYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSSPDSKRGNLITPYYCTVCQELFVSSLELIQHLIQHSDMNTALKRQPLTGPRKYKRRRKLKPHELERLRAQKSKSGNDFDYSDEEIFLPNEEDQLSDNDNNLSKYSRVRTNSSNQNKRKVVERKQNSIKQSSDDNFESMLQSLTLPNLDNIPLTNNKTTTGKVIGKKKVKLDSLQQQSSRPKMIHTQKTRIAIEDGKRKTKTFITRTTATNDSSAVSGSHQNERNRPRTKNVNYHVLVHDKLPNATFPNDIGINNLLNLKEEKLTSNNYEYKSNESEINFSYELPRKSLEKYNSDIVNDLEEILRSPIKGTCLLSNEDTEVNEENNDVKKQHISLRPKRNKNKFSFKIGQAPLLKDEKKTNIKQVKRKSNKWSSKNIQKQDNIKNIGNLDYPIVVKQEKEEIITDEIYRCEMCSAVFNNRSQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -