Priv014696.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720154.1:37122515-37124416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 67 4.5 0.1 2 11 118 127 117 130 0.82 2 14 0.61 34 5.4 0.8 2 23 136 158 135 158 0.88 3 14 0.52 29 5.7 0.2 2 13 165 176 164 177 0.88 4 14 0.0013 0.073 13.8 2.5 1 23 199 221 199 221 0.93 5 14 5.1e-05 0.0029 18.3 3.6 2 23 228 249 227 249 0.95 6 14 0.0013 0.074 13.8 7.4 1 23 255 278 255 278 0.95 7 14 3.7e-05 0.0021 18.7 0.9 1 23 283 305 283 305 0.96 8 14 0.00032 0.018 15.7 1.4 1 23 311 333 311 333 0.97 9 14 0.00019 0.011 16.5 0.3 1 23 339 361 339 361 0.98 10 14 0.0005 0.028 15.1 1.9 1 23 396 418 396 418 0.93 11 14 1e-06 5.8e-05 23.6 5.0 1 23 425 447 425 447 0.98 12 14 7.5e-05 0.0042 17.7 3.8 1 23 453 475 453 475 0.98 13 14 1.5e-07 8.3e-06 26.3 1.2 1 23 481 503 481 503 0.99 14 14 1.5e-06 8.3e-05 23.1 2.1 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- atgaaagagtTAGATGGTTCGGATTCCAGTAATGACAGCGATGATACTTCTTCGTTTGAATCTGAAACATCATCAGACCAAAATTCAAACTCTTATGAATCTGATTCTAGTTGTTGCAGTTCGgatgaaagtgaaaatgaATCTGAAGAGGATTCGAAAAAAcacattattaatttaactGTGAAAAAGGAGGAAGATAAGATTGTCAATATTTCTAAAACTGAGTCAAAAGAGCCTAAACGTATTAAAATTGAggagaaaatagaaataataaaaacagaaaaaacatgTGAAAATATTCCTGAGTCTGGAAATATTGTTGAGCCTGAACATATAGCTGGAATTGATATTAAATGTTCTAAATGTGGAAAAAGAATTTCCAATCTAATGATACTTCCATTTTTgaaatgtattttttgtagTAAAACATTTGAACTGttcaatttattaacaaatcaTTTAGAAAATGAACACAAGAATGAAAAATGTGTAGAATGTGCTGATTGTGAAAAATCTTTTGAATCAAAGGAGATAACTGTTGAAATAGAACCAGTTAAAGCAATAAATAATACAGTAAACGATAAAATTAATCCGTATAATTGTATTCTGTGTAAGAAAACATTTAAGTTACGTGAAAAGCTTAGAAAACATATTTCAACTCATATTGAAGCAAAGAAATTATGCTGTTGCTACTGTAACAAAACATTTCCATCACCCAGTTTATTACGTGATCATTTATTAATGCACGCAATTGATCGTCCACATTGTTGTAAGAtctgtaaagaaaattttcgtGAAAAAACACAACTTAAAAAACATATGACTAAAATGCATTCTGCCAAACCATACGCTTGCAGTGAAtgtaataaaacatttaaaataagtGATAGTTTATTTAAACATGAGATGCTTCatagagagaaaaaacttCATAAATGTGATATTtgtggaaaaatatttagagaAAATCAAAGATTATTAGAACATCGTGCAAAACACACAGGAGAAAAACTATATAAATGTGACAAGTGTGAAAAAGCTTTCTCATCCACTATATCATTAGCAGGTCACGTTAAATTACATAATACCATAACAAAAGAaccagaaataaaattgattgaaagCACAAAACCCGAAGTCTTGActataaaacttaaaaagaagcaaattaaaaagaaactcAATTATAATTGCGAAATTTGtggtaaaaaatttatatcgcGAATGAGTGTAACACGTCATAATCATTTGCATACTGGGGAGAAAAAGTCATTTAAATGTACACAATGTAATAAATGTTTTACACAATCTAGCtcattaaatttacatttaaaaattcattccgGTGAAAGAAAGCATAAATGTGAATTTTGTggtaaagaattttatattgcTGATCATTATAATCGACATTTACGTGTTCATACAGgtGAAAAACCGTTCCAATGTTTGGTATGTGATAAAGCGTTTATCGTTCAGGACCATTTAACAAAACATATCAGGACACACACAGGTGAGAAACCTTTTACCTGTTCTCGATGTGATAAACGTTTTTCACAATCATCAGGACTTAAACAGCATCTTATAAAACATTGCAATATGCCTGCTCCCTCTACTTATTGA
- Protein Sequence
- MKELDGSDSSNDSDDTSSFESETSSDQNSNSYESDSSCCSSDESENESEEDSKKHIINLTVKKEEDKIVNISKTESKEPKRIKIEEKIEIIKTEKTCENIPESGNIVEPEHIAGIDIKCSKCGKRISNLMILPFLKCIFCSKTFELFNLLTNHLENEHKNEKCVECADCEKSFESKEITVEIEPVKAINNTVNDKINPYNCILCKKTFKLREKLRKHISTHIEAKKLCCCYCNKTFPSPSLLRDHLLMHAIDRPHCCKICKENFREKTQLKKHMTKMHSAKPYACSECNKTFKISDSLFKHEMLHREKKLHKCDICGKIFRENQRLLEHRAKHTGEKLYKCDKCEKAFSSTISLAGHVKLHNTITKEPEIKLIESTKPEVLTIKLKKKQIKKKLNYNCEICGKKFISRMSVTRHNHLHTGEKKSFKCTQCNKCFTQSSSLNLHLKIHSGERKHKCEFCGKEFYIADHYNRHLRVHTGEKPFQCLVCDKAFIVQDHLTKHIRTHTGEKPFTCSRCDKRFSQSSGLKQHLIKHCNMPAPSTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -