Priv017823.2
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720155.1:31904665-31908242[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0027 0.15 12.9 0.9 2 23 132 153 132 153 0.96 2 16 0.25 14 6.7 1.1 2 13 157 168 157 175 0.85 3 16 9.1e-05 0.0051 17.5 1.6 1 23 181 203 181 203 0.98 4 16 0.00065 0.036 14.8 3.5 1 23 209 231 209 231 0.96 5 16 0.06 3.3 8.6 1.5 1 23 237 259 237 259 0.91 6 16 1.2e-06 6.8e-05 23.4 1.3 1 23 265 287 265 287 0.98 7 16 0.00021 0.012 16.4 0.7 1 23 293 315 293 315 0.98 8 16 1 58 4.7 5.2 1 14 321 334 321 337 0.92 9 16 0.047 2.6 8.9 3.1 1 23 591 610 591 610 0.86 10 16 0.00011 0.0059 17.3 2.8 1 23 615 638 615 638 0.98 11 16 0.0033 0.18 12.6 3.4 1 23 644 666 644 666 0.90 12 16 1.4e-05 0.00076 20.1 0.4 1 23 671 693 671 693 0.99 13 16 5e-06 0.00028 21.4 1.2 1 23 699 721 699 721 0.98 14 16 0.0005 0.028 15.2 0.8 1 23 727 749 727 749 0.98 15 16 0.0026 0.15 12.9 4.1 1 23 755 777 755 777 0.98 16 16 1.3e-07 7.2e-06 26.4 0.7 1 23 783 806 783 806 0.97
Sequence Information
- Coding Sequence
- ATGGAATTACATCTTTtggataaaaaattaaaaattattccagtagttttaaacaagaaaattgaTGGCAATATTTCGATAACTAAAAACACACAAACGACAACGGTCCCATtggaaattaagaaaaatacaaatgaagATAATGACGATTATTGGGATAATCTTGACAATTGGGATAATAATTATAGTGACGATACTGACAACGATGATAAAGATAAATGCAATGACGGTAAAGACGATGATGATTCTGAAAGCAATGAGAATGATGATAAGTATGAATTTGTGGGTAGTGGTGATGAATGGGATCCTGACACAGAATATCCAGaagaaattcttaataatGAACCCGAAGTAATTTTTGACGAAGTCAAAAAAGaaccagaaaaaaagaattattgtgaaaaatgTGATAAAACCTTTTCTGCCAAACTGTATTATTTGAATCATCTTTTGTCACATGATCGTCCTACATGTAAAATTTGTGGCAAAAAATATCGTGATGAAAAATCACATATGTTTAAACATTCAGACGAAAAACCGCATCAGTGTAAAGAATGTGGTAATCAATTTAAAGATTTGAATggattaaaaaatcatttaattacaCATACAACAGAACGTCCTCATGCGTGTACAAAatgtgataaaaaatttaaaacacgTGATAGATTACGAGGTCatgaaaaaatacatttaaccGATCGTCCTCATAAGTGTGAAACTTGTGGTAAaggatttatttttcttggtCAAATGAAATTTCATGCAAAAATCCATACAGgagagaaaaattttatttgcagTTATTGTGGTAAAAGATTTCAATCTAATCATGGTCTTAATGCCCACATTCGAATTCATACAGGCGAAAAACCTTTCCAATGCTTAATTTGCTCTCGTGAATTTAATTCTAGGGGAGGCTTATACACCCACACCAGAATCCATAGTGGCGAACGCCCATATAAGTGCAAATTTTGTGATAAAGCATTTCATGATTCGAGTACTTGTAAAAAAATTGAATTACCTGAGAttcatgaaaatataaacataaggGAATTGCTTTGTGTATTGGAACGTGCTCCATTAACATCTGAAAATATTTCAGGGAAACCCATGTCTTTTTTGGATTTGAAAGAAGATAATCTTCagtttgatgatgatgaaaatgagATTAATGCTTATGAGAAGAttgataatgataaaaatgagATAATTGATTATGAGAAGAAGGTTGATGATCAAaagaatgatgatgattataagAAGAAGTATGACGATAAGAACCATGATGATAAGGATAAGAAGAATATTGGTGATAACAATGATAATGACGGGGCGAAGAATCACAATAACGATGAGAATAtagaattaattgattatGAGAAGAAGGTTGATGATCAGAAGGAGGATGATGATGACAAAAAGAAGTATGGGgatgagaagaaaaatgatgaGAACAAGAATAATGAGGATGAAGAGactgataatgatgatgatgaggattatgataatgatgatgatgaggatTATGATaatgctgatgatgatgatgatgggaATTATGATATTCATAATGATGGGGATGAAGATTATGAGAGTAGCGGTAAAGAATCAGAGCCAGACAAAACAGCTAAAAAAAAGGGCAACATTAGTGAAAAACGAGTTCTTCGTGGTGTTACAACAGTTTCAAAAGTATTTCTTTGTGAAAAATCTGGTAACTCATATGCTAAAAAAGCGGATCCATTGAATCATAAGAAAACACGTACTCGTTTCCAATGTGATATTTGTGGAGAAACATATAGTCATAAAAGACGTCATATGCTAAAACATCAAGTTGATAAGCATAAATGCGAAAAATGTGGTAGACAATTTAAGGAAGCTTATCGTTTAAATTATCATATGAATACAATTCATTCAAATTTACGTCCATTTAAATGTACTAAATGtgataaaacatttaaaacacGTGAAAGAATAAGGGAACACGACAAAACACATTTAAAAAGACCTTTTAAGTGTGAAACCTGCGGGGAAGGATTTATATATGAACCTAAACTGATAAAACATCAGAGAACACACACAAATGAAAAACCATTTATTTGCAGTTATTGTGGTAAACAATTTCATACTGCTCCTAATTTAACTACTCACGTTCGAATTCACACAAATGAAAAACCGTTCAAATGCGATGTTTGTCAGCGTGGATTTAATGCAAATTGGAGTTTACGAactcataaaaaaattcatagtGGCGAACGTCCATATAAATGCCAAACTTGTGACAAAACATTTTATGACTTGAGTACATGTAAAGTACATGAACGAATACACACAGGAATTTATCCCTACAAATGTAAATTATGTGGTAAAACAAGTAATCAAGCAAGTAATCTGAAAGCACATATGAGACaagttcatttaaattttacacactaa
- Protein Sequence
- MELHLLDKKLKIIPVVLNKKIDGNISITKNTQTTTVPLEIKKNTNEDNDDYWDNLDNWDNNYSDDTDNDDKDKCNDGKDDDDSESNENDDKYEFVGSGDEWDPDTEYPEEILNNEPEVIFDEVKKEPEKKNYCEKCDKTFSAKLYYLNHLLSHDRPTCKICGKKYRDEKSHMFKHSDEKPHQCKECGNQFKDLNGLKNHLITHTTERPHACTKCDKKFKTRDRLRGHEKIHLTDRPHKCETCGKGFIFLGQMKFHAKIHTGEKNFICSYCGKRFQSNHGLNAHIRIHTGEKPFQCLICSREFNSRGGLYTHTRIHSGERPYKCKFCDKAFHDSSTCKKIELPEIHENINIRELLCVLERAPLTSENISGKPMSFLDLKEDNLQFDDDENEINAYEKIDNDKNEIIDYEKKVDDQKNDDDYKKKYDDKNHDDKDKKNIGDNNDNDGAKNHNNDENIELIDYEKKVDDQKEDDDDKKKYGDEKKNDENKNNEDEETDNDDDEDYDNDDDEDYDNADDDDDGNYDIHNDGDEDYESSGKESEPDKTAKKKGNISEKRVLRGVTTVSKVFLCEKSGNSYAKKADPLNHKKTRTRFQCDICGETYSHKRRHMLKHQVDKHKCEKCGRQFKEAYRLNYHMNTIHSNLRPFKCTKCDKTFKTRERIREHDKTHLKRPFKCETCGEGFIYEPKLIKHQRTHTNEKPFICSYCGKQFHTAPNLTTHVRIHTNEKPFKCDVCQRGFNANWSLRTHKKIHSGERPYKCQTCDKTFYDLSTCKVHERIHTGIYPYKCKLCGKTSNQASNLKAHMRQVHLNFTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -