Basic Information

Insect: Pedicia rivosa
Gene Symbol: -
Assembly: GCA_963082725.1
Location: OY720153.1:16347312-16350131[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.029 1.6 9.6 2.1 1 23 219 242 219 242 0.94

2 13 2.2 1.2e+02 3.7 0.4 5 23 249 268 246 268 0.88

3 13 0.00023 0.013 16.2 5.3 1 23 296 319 296 319 0.96

4 13 0.0011 0.061 14.1 1.4 1 21 387 407 387 408 0.95

5 13 2.7e-07 1.5e-05 25.4 0.7 1 23 416 438 416 438 0.97

6 13 6.8e-08 3.8e-06 27.3 1.1 1 23 444 466 444 466 0.98

7 13 0.061 3.4 8.6 4.5 1 23 472 494 472 494 0.98

8 13 2.3e-07 1.3e-05 25.7 0.8 1 23 500 522 500 522 0.95

9 13 3.7e-05 0.0021 18.7 0.3 1 23 528 550 528 550 0.99

10 13 7.4e-07 4.1e-05 24.1 0.3 1 23 556 578 556 578 0.98

11 13 0.00019 0.011 16.5 0.6 1 23 584 606 584 606 0.98

12 13 2.9e-05 0.0016 19.0 1.5 1 23 612 634 612 634 0.97

13 13 0.00057 0.032 15.0 4.5 1 23 640 662 640 662 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.029	1.6	9.6	2.1	1	23	219	242	219	242	0.94
2	13	2.2	1.2e+02	3.7	0.4	5	23	249	268	246	268	0.88
3	13	0.00023	0.013	16.2	5.3	1	23	296	319	296	319	0.96
4	13	0.0011	0.061	14.1	1.4	1	21	387	407	387	408	0.95
5	13	2.7e-07	1.5e-05	25.4	0.7	1	23	416	438	416	438	0.97
6	13	6.8e-08	3.8e-06	27.3	1.1	1	23	444	466	444	466	0.98
7	13	0.061	3.4	8.6	4.5	1	23	472	494	472	494	0.98
8	13	2.3e-07	1.3e-05	25.7	0.8	1	23	500	522	500	522	0.95
9	13	3.7e-05	0.0021	18.7	0.3	1	23	528	550	528	550	0.99
10	13	7.4e-07	4.1e-05	24.1	0.3	1	23	556	578	556	578	0.98
11	13	0.00019	0.011	16.5	0.6	1	23	584	606	584	606	0.98
12	13	2.9e-05	0.0016	19.0	1.5	1	23	612	634	612	634	0.97
13	13	0.00057	0.032	15.0	4.5	1	23	640	662	640	662	0.98

Sequence Information

Coding Sequence: atgacaTTGTGTATCGACAAAATTTGTCGAACATGTATGAGTATGACAGAAACAGGACTTTTATctatttatgaaaaatgtttacaacAAAAAGAACTGTCAGATAATATGCCATCGATAACGGAAATGTTAATGTCATTTACAACAATCCagGTAGAAAAAGATGATGGATTACCAGAACATATATGTCTTACATGTATTAGTGATATAAATAGCGCATTTGCGTTTAAGCAAAAATGTGAACGTGCTGAAATAACACTAAAAACATATTTACAACAATTAAATGTTAGtaacaatataaaacaagAAAGTTCTGTAACAACATTACCAGATTTAGGTGAAATAACACATTTACTTAAAACAGAAGAAATGctattagaaaataatcaacTGATAGAAgcaaatagaagaagaagagcggtagcagcagcaacaacattaacaaaaactgaaattgttattgttaatgataatgaaaattttattattgaaaataaaactgaattaaatattgaggaagaaaataatgttGATAATTTAGCTGGTGTAGAacaagaagatgaagatgaggaagatgaagatgatCAAAATCATGAATTAATGGAATCTATTGACGAGGAAAATGATGatataaaaacagaagaaaatattatctatGAATGTGTTTTATGTTGTTCACGTTTTGAagataaatcaaatttaaaggatcatatgattaattttCATGATACAAAACATTGTATTGAATGTGATAtgtattttaaaacaattgaacTTTATAATGAACATATAGatgaaaatcatttaaatgaatcaatagtaacaacaacaaatgaaatagaaacaaaagaaaaaaataataaaataagtaaacaaaaaattgtacataaaTGTTCATATTGTGGTATGGATTTTGTACATAAACGTAAttttgaaaaacatttaatacGTTATCATTCAAgtgatattaaattaaaaaatttacctaatataaataaaaaacaattaattgaagatgataatatttcattggctgaattaaaaaatttaacaacaaaaacagattCTAAAATAGTTTCATTAACAGAAAAACCAACATCACCTTCGTCAACATCTTCTACAACAAcgataacaacaacattaaatcCAGTTACACATTATAAATGTAGTAAATGTGGTGCAcgttttgttaaagaaaaatcattgcGTTTACATCATAACTCAAATAAATGTACAGAATTATCATATCCATGTAGTATATGTAAACGTGTATTTGcacgtaaaaaaaatttacaacaacatATGTTATTACATGATGATAAAAAAGATTATAAATGTAATGAATGTCCTAAAGAATTTACAAGACAAGATCAATTAACACTACATATGCAAAATCATCGTGGTATTAAAAAACATCAATGtggtttttgttgtaaagGTTTTAATATGATATCAACATTAAAAGATCATATCCgTACCCATAACGGCGAACGTCCATTTTTATGTTCAATTTGTGGTAAAGGTTTTAGTCAAAgtacaaatttaaaacaacataTAATGCGccatacaaaaacaaaaccattTAAATGTACCATTTGTTTGTATGCATTCGTCAGTAAAGgtGAATTAGATGCTCATTTACGTAAACATACTGGGGATCATCCTTTTGTTTGTGACGTATGTGGTACTGGTTTTACAACATCAAGTTCATTGgtGAAACACAAAAGAATCCATACAGGTGAAAAGCCATACGCTTGTGAATTTTGTCCAATGCGTTTTACTGCCCTTGGTACACTTAAGAATCATCGACGTACACATACTGgtgaACGACCTTTTGCATGTAAATTTTGTGAACGAACTTTTGCACAGAAAAGTGACATGGTTTCTCATACTCGTACACATACTGGTGAACGTCCATACGTATGTTCATTATGTCATCTTGCTTTTCAACATTCAAGTACACTTAAATCCCATTATAAAATACATCAAAATCAGGATGAGGAACAACAAACGGGAAGTGTAGTTGATGATATTGTTGAAACATCACAAAAAGATATactaaatacaaataattaa
Protein Sequence: MTLCIDKICRTCMSMTETGLLSIYEKCLQQKELSDNMPSITEMLMSFTTIQVEKDDGLPEHICLTCISDINSAFAFKQKCERAEITLKTYLQQLNVSNNIKQESSVTTLPDLGEITHLLKTEEMLLENNQLIEANRRRRAVAAATTLTKTEIVIVNDNENFIIENKTELNIEEENNVDNLAGVEQEDEDEEDEDDQNHELMESIDEENDDIKTEENIIYECVLCCSRFEDKSNLKDHMINFHDTKHCIECDMYFKTIELYNEHIDENHLNESIVTTTNEIETKEKNNKISKQKIVHKCSYCGMDFVHKRNFEKHLIRYHSSDIKLKNLPNINKKQLIEDDNISLAELKNLTTKTDSKIVSLTEKPTSPSSTSSTTTITTTLNPVTHYKCSKCGARFVKEKSLRLHHNSNKCTELSYPCSICKRVFARKKNLQQHMLLHDDKKDYKCNECPKEFTRQDQLTLHMQNHRGIKKHQCGFCCKGFNMISTLKDHIRTHNGERPFLCSICGKGFSQSTNLKQHIMRHTKTKPFKCTICLYAFVSKGELDAHLRKHTGDHPFVCDVCGTGFTTSSSLVKHKRIHTGEKPYACEFCPMRFTALGTLKNHRRTHTGERPFACKFCERTFAQKSDMVSHTRTHTGERPYVCSLCHLAFQHSSTLKSHYKIHQNQDEEQQTGSVVDDIVETSQKDILNTNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -