Priv009166.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
-
Assembly
GCA_963082725.1
Location
OY720153.1:12380324-12383161[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.8e-05 0.0049 17.5 0.5 1 23 185 207 185 207 0.98
2 13 3.7e-05 0.002 18.7 3.5 2 23 214 235 213 235 0.97
3 13 0.0072 0.4 11.5 0.7 2 20 241 259 240 261 0.94
4 13 0.026 1.5 9.8 0.7 3 23 296 316 295 316 0.98
5 13 0.0029 0.16 12.8 1.9 1 23 406 429 406 429 0.93
6 13 0.00046 0.026 15.3 0.2 1 22 436 457 436 457 0.95
7 13 7.1e-05 0.0039 17.8 1.8 1 23 517 539 517 539 0.97
8 13 3.1e-08 1.8e-06 28.4 1.7 1 23 546 568 546 568 0.98
9 13 9.2e-08 5.1e-06 26.9 1.7 3 23 580 600 578 600 0.96
10 13 2.4e-05 0.0013 19.3 2.8 1 23 606 628 606 628 0.99
11 13 1.2e-06 6.7e-05 23.4 2.2 3 23 636 656 634 656 0.97
12 13 3.9e-07 2.2e-05 24.9 3.1 1 23 662 684 662 684 0.99
13 13 0.0083 0.46 11.3 0.1 1 23 690 714 690 714 0.93

Sequence Information

Coding Sequence
ATGGATGAAAATCCATCAATTGATGTGGAATATGATTTAAATCGTATATGTAGATCATGTTTAAATGAATGTGATAATCTTAGTTCTGTATTTGATATTATTGCATTCAATAATTCACAAccattaaatgaaaaaattatggCAGTAGCACAAGTTCaggtAGTGGAAGATGATGGTATGCCCcaaaaaatatgtgaaaatTGTACAAGACAAGTTCATAATGCATAcgatttcaaattaaaatgcGAGCAAAGTGATAGTGCGCTAAGGGAATACATACTTAAAAAAGatccaaataataaaataaaaattttatcagCAATTAAACAAGAAGATGAATTTCATTTATCAATAAAACCAGAAATTTCGATAGTTGAAGATGATCCACTCAATGaagatttttataatatgaCATCAAGGAATGTTAAAAAAACCGCTTTAcaaattgatgatgatgaccaAGACCCAGAAGATAATGATTGTTTAAAAGATGATCCAGATTATtcagaagaaaatattaattataaagcAGCAAGGAATGAACAAGGAAGATATAATTGTCATATTTGTGAAAAAACTTTAGCAGATGCAAAAGGGTTAAAACTACATATCCGTTTACATACAGGACAAAATTTAAAGCGGTGCAGTGTATGCAATCGAggttttgCTAAGAAAAATCATCTTACAAGACATATGGATAcacataaagaaaaagttataaCTTGTGTTCACTGTGATGATACATTTACAAGCAATCATGATCTTAAAATTCATCTTACACTTAATAATGTTTCCAgAAAAAGAGGGagaacaattaaaaaagaacCAATAATTGAGTCTGATAGTGGTGATGAAGGTGAAGATACCAAAGAAAAAGTTGGTGCATGTAAAATATGTGATTCcacattcaataaaataagtatTCTACGAACACATTTACAAACCCATTCCAATATTGaaagttttaataatattgatttacaatcaaaattgtttttatttgacttaACAAAAATTACACCAAGTTTGGAAAATAATCaagaattaacaaaatatataatgaaaGATATACAAGAGGGAATGTTTTCCAGATTTTATCAAATAACCAATCAAAGTGGATACGAATATAATTTATCAGATTCTGAAACAGAATCAGAAAGCGAAGATATGCCAGTGGAAATGTTTACTGataaaaaaccaaatataGCAGGACAACACGCTTGTGTTAATtgtgataaaatatttgatcgttcatataaaataaatcaacataTGAAATTTGAGCATCCagaaaatgaatttctatTTCCATGTGGTTATTGTCAACGTTATTTTTCAACTGAATGGCTTTTAGCTAAACATTTACGAAGTCAATGtgacaataaatttaaacaatattcATGTAGTgcatgtaaaattaaatttatgtggCAAACAAGTTATGAAAaacataatgaaaaatttcattctgGTAAACGTgttaaaaaaacgaaaacaaaaaataaaagtcgtgatagacaaataaaagaaaaaccaaaagaaaaaaattttatatgtcAAGTATGTTCAAAAGCATTTTTCCGGCAAGAACATTTAGACCGTCATGTTAAAATTCACATTCCATCAGAGAGAAAATTTGAATGTAcgatttgtgaaaaaaaatttaatcgtaAAGATAATTTAAGATCGCATATGCGCGTtcacaaagaagaaaaagaagactGTGATAAACATTTGTGTGTTTATTGTGGAAGGAGTTTTTCTAATTCATCAAATTTGATTGTCCACATgcgGCGACATACTGGTGAAAAACCATACAAATGTGATTTGTGTGATAAAGGATTTCCAAGATCCTCAGATCTCCAATGTCACAGAAGAACACATACTGGCGAAAAGCCTTGCTTATGTACAATTTGTGGAAAaggCTTTTCACGTTCTAATAAACTTGTTAGGCACATGAGAATTCATACAGGAATTCGTCCTTATAAATGTACACATTGTGATCGTGCATTTACTCAATCAAATGATTTAACTTTACATATTCGTCGACATACAGGTGAAAAACCGTATGTTTGTGGTATTTGTGGTGACCGATTTATACAAGGAACAGCATTACAAACTCACCGTCGAATGCAGGGACATTATGAAGAGGTGAATCAACCGGCACCATTTGCTAGTATTAGTGTTAATAATCCTAATCGTTTTACAAATGCAAATCGCGTTAATCGTATTGGCATATCAGCGGCTAATATATccaatgaaataaaacaaacaattgtAAAACAAGATATATCAAGTCCAACACCTGATAGTTCAATACAATCATCAGCAACAggagcagcaacaacaactgTAGCACCCACCAATTCATCAGCATCAAGACTACTACCTGGTTTTGGTATGCACGGTGCTTATGTTCCAAACGGTGTACCATTTTTATCAAATTCGGGTGTATTAATGCAAAATTTAGAAGTATCTActacaatattttcaatttccgCTTATAATCAAggttttaactaa
Protein Sequence
MDENPSIDVEYDLNRICRSCLNECDNLSSVFDIIAFNNSQPLNEKIMAVAQVQVVEDDGMPQKICENCTRQVHNAYDFKLKCEQSDSALREYILKKDPNNKIKILSAIKQEDEFHLSIKPEISIVEDDPLNEDFYNMTSRNVKKTALQIDDDDQDPEDNDCLKDDPDYSEENINYKAARNEQGRYNCHICEKTLADAKGLKLHIRLHTGQNLKRCSVCNRGFAKKNHLTRHMDTHKEKVITCVHCDDTFTSNHDLKIHLTLNNVSRKRGRTIKKEPIIESDSGDEGEDTKEKVGACKICDSTFNKISILRTHLQTHSNIESFNNIDLQSKLFLFDLTKITPSLENNQELTKYIMKDIQEGMFSRFYQITNQSGYEYNLSDSETESESEDMPVEMFTDKKPNIAGQHACVNCDKIFDRSYKINQHMKFEHPENEFLFPCGYCQRYFSTEWLLAKHLRSQCDNKFKQYSCSACKIKFMWQTSYEKHNEKFHSGKRVKKTKTKNKSRDRQIKEKPKEKNFICQVCSKAFFRQEHLDRHVKIHIPSERKFECTICEKKFNRKDNLRSHMRVHKEEKEDCDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGIRPYKCTHCDRAFTQSNDLTLHIRRHTGEKPYVCGICGDRFIQGTALQTHRRMQGHYEEVNQPAPFASISVNNPNRFTNANRVNRIGISAANISNEIKQTIVKQDISSPTPDSSIQSSATGAATTTVAPTNSSASRLLPGFGMHGAYVPNGVPFLSNSGVLMQNLEVSTTIFSISAYNQGFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-