Priv003190.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- -
- Assembly
- GCA_963082725.1
- Location
- OY720151.1:41800703-41804309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.63 10.9 0.8 1 23 121 143 121 143 0.96 2 13 1.9e-05 0.001 19.7 2.3 1 23 148 171 148 171 0.96 3 13 0.0013 0.074 13.8 4.4 2 23 185 206 184 206 0.98 4 13 3.9e-06 0.00022 21.8 5.6 1 23 365 387 365 387 0.97 5 13 3.2e-05 0.0018 18.9 4.4 1 23 393 415 393 415 0.98 6 13 2.9e-05 0.0016 19.1 2.7 1 23 421 444 421 444 0.93 7 13 2.3e-06 0.00013 22.5 0.6 3 23 456 476 455 476 0.98 8 13 7.8e-05 0.0044 17.7 0.7 2 23 482 503 481 503 0.96 9 13 3.5e-06 0.0002 21.9 0.4 1 23 509 531 509 531 0.96 10 13 2.6e-06 0.00014 22.3 0.7 1 23 537 559 537 559 0.98 11 13 9e-06 0.0005 20.6 0.8 3 23 567 587 565 587 0.96 12 13 3.5e-06 0.0002 21.9 1.5 1 23 593 615 593 615 0.99 13 13 0.00033 0.018 15.7 1.4 1 23 620 643 620 643 0.98
Sequence Information
- Coding Sequence
- ATGGATACAACAAATATAGATATAACCAAAGTTTGTCGGACTTGTTTAAAGGAAGGCGATAACATGAAGTCAATATTTTGTTCGATCTCACAAAATATTCCAATATCAAATATGATCACATTATGTACTGTAACAAAGatcaAAGATTCTGACAGATTGCCATCACAAATTTGTAATCAATGCATTCAAGATGTTGAAatatcttatttatttaaaaaacaatgtGAAAAAGCATATGATACATTAACTAAATTATTagttaatgaaataaaagataGTGTTAAATTAGAAACCAAtagtaaagaaataaatttagaaaatgataatgaaaaatatacacaaacaGAAGAAGTAATGTTTCATCCTTGCGAAATGtgtgataataaatttatgacagaagaagcattaaaattgcatcGTTTACAGCATAAAGGTGAAGAATATAAATGTCGTAATTGTTCTAAAGTATATTCACGTTTAAATCATTTACAACGTCACATAGCAATTTCCCATCCAGAATTAGCTAATTTAAAACTATTGTCACAAGTGAATAAATGTCATAtatgtgaaaaattatttatgcgTGGTGAGCATTTGAAACGTCATTTGTTAacacataaaacaaaaaaaaatgatgaatatGATATTGAAGAGGGAGAAATTGCTGatttgaaagaagaaaatttaaaatctgaAACAGAAAGTGATGTATCCGGTAGTAAAGATGTTTCAATAGAAGAAGAACGAAATGAAATACTATTTTCCGAACCTGATCTTAGTATGATtgataatttagaatttaaatcaGAATTAATATCAGATTCTGAATTTGATTCGCGTGaagataatataaaagaagaagatgctGATTATGATGtattaaaagatgaaaatgaggaaacagatgatgatgatgattatagTCCAAGAGgttcaaattcaaatatatCAATGAAAAAAGTACGTGgtagaacaacaaaaaaatcagaaaatataaatccaaataaaagtaaaattaaaacaaaaacatcaaaaacaaTGTCttcaccaacaacaaaaacagcaGATAATAATGAAGTAAAACCAAAAGTACATCAATGTAATAAATGTGATAAATCATTTACACGTGCAACACATTTAAGACGTCATGAAGTAACACATCTTGAAATAAAACCATTCAAATGTGATGTTTGTGAAAAACGTTTTTCACGAGTTgatcatttaaatttacatatgCATAATCATGCTGATACAAAACCATTTTCATGTTCAATATGTCAGAAAGGTTTTACACGTGCAGagcatttaaaaaaacacaatgaATCACGTCACGGTGACAAGCACACAGTacaaaaaactgaattttGTGAAATATGTAAAAAAGGTTTTACAACagcaaaatatttacaaattcatATGAGAATACATACCCAACGTATATGGTCCTGTAAATTTTGTCAAGAAACATTTAATTCAAAACCAGATTTAACAGAACACCAAAAAATTCATGTCAACGAACGTCCTTTCTTATGTTCAGAATGTGGCTTACGCTTTGTACGTAATGATTATCTTGTTATTCATATGAGAAGaCATAAAGGGGAAAAGCCTTACAAATGTAAATTTTGTGGTAAAGGATTTCCGCGAGCGACAGATTTAACAGTCCACGAAAGATACCATACAGGAGAGAAAACACATTTATGTACTATCTGTGGTAAAGGGTTTCAACGTGCTTATAATTTACTTGTTCATACTAGGGTTCATACAGGTGAACGTCCGTATAAGTGTCCACATTGTGAGAAAAAATTTGCCCAAGGAAATGATTTGAAAGCTCATGTCAGGCGACATACTGGCGAACGTTATAAATGTGAGATATGTGGAGACGGATTTATTCAAGGTTACCATTTAACACAACATAAAAGAACACAGCATGGTATTGATATGAAATCACATATAAGGCgtgttgaaaaatttataacaccaatggcacaacaacaacaagtattacaattacaaaaaGTTGGTGAAAATGATACggatgaacaacaacaacatcaagagcaacaacaacaagatgctcaaataattgaaataaaagatgaaattGTTAAACTGGAACCGAGTTTATTGGGTGGTAATAATCAAATTGATGGACAACAAGGAaatatgCAGCAACAATCTATAGTCAATAATCATTTCCATCAACAACAACttcaactacaacaacaacaacaactgcaGCAAACATCAATAATGCCAGCTTTATTTTCAACAATgcagaaaattaaatatgaatag
- Protein Sequence
- MDTTNIDITKVCRTCLKEGDNMKSIFCSISQNIPISNMITLCTVTKIKDSDRLPSQICNQCIQDVEISYLFKKQCEKAYDTLTKLLVNEIKDSVKLETNSKEINLENDNEKYTQTEEVMFHPCEMCDNKFMTEEALKLHRLQHKGEEYKCRNCSKVYSRLNHLQRHIAISHPELANLKLLSQVNKCHICEKLFMRGEHLKRHLLTHKTKKNDEYDIEEGEIADLKEENLKSETESDVSGSKDVSIEEERNEILFSEPDLSMIDNLEFKSELISDSEFDSREDNIKEEDADYDVLKDENEETDDDDDYSPRGSNSNISMKKVRGRTTKKSENINPNKSKIKTKTSKTMSSPTTKTADNNEVKPKVHQCNKCDKSFTRATHLRRHEVTHLEIKPFKCDVCEKRFSRVDHLNLHMHNHADTKPFSCSICQKGFTRAEHLKKHNESRHGDKHTVQKTEFCEICKKGFTTAKYLQIHMRIHTQRIWSCKFCQETFNSKPDLTEHQKIHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCEKKFAQGNDLKAHVRRHTGERYKCEICGDGFIQGYHLTQHKRTQHGIDMKSHIRRVEKFITPMAQQQQVLQLQKVGENDTDEQQQHQEQQQQDAQIIEIKDEIVKLEPSLLGGNNQIDGQQGNMQQQSIVNNHFHQQQLQLQQQQQLQQTSIMPALFSTMQKIKYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -