Priv009057.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
ZFX
Assembly
GCA_963082725.1
Location
OY720153.1:10899469-10902938[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1e-06 5.6e-05 23.6 1.1 2 23 201 222 200 222 0.96
2 16 0.0004 0.022 15.5 0.6 3 21 244 262 242 263 0.93
3 16 0.00058 0.033 14.9 0.7 2 23 273 295 273 295 0.96
4 16 0.00015 0.0082 16.8 2.9 1 23 301 323 301 323 0.97
5 16 1.5e-05 0.00082 20.0 1.9 1 23 329 352 329 352 0.97
6 16 0.16 8.7 7.3 3.9 1 23 357 379 357 379 0.96
7 16 0.0043 0.24 12.2 8.9 1 23 385 407 385 407 0.99
8 16 2.4e-05 0.0014 19.3 3.4 1 23 413 435 413 435 0.96
9 16 1.6e-05 0.00091 19.8 0.6 1 23 441 463 441 463 0.98
10 16 2.7e-08 1.5e-06 28.6 2.0 1 23 469 491 469 491 0.99
11 16 0.00035 0.02 15.6 1.7 1 23 497 520 497 520 0.96
12 16 1.9e-06 0.00011 22.8 0.6 1 23 563 585 563 585 0.98
13 16 2e-05 0.0011 19.6 1.4 1 23 591 614 591 614 0.94
14 16 1.4e-05 0.0008 20.0 2.1 1 23 620 642 620 642 0.99
15 16 0.0014 0.076 13.8 2.3 1 23 648 670 648 670 0.97
16 16 0.0065 0.36 11.7 1.1 1 23 676 698 676 698 0.98

Sequence Information

Coding Sequence
atgacTGAATTAGATACGGAATATTCGCTAGAAAAAACATGTAGAACTTGTTTACGGAGTGATACAAATTTGGATagattttattctatttttgaaAAGGATACATTGAATGATATTCCAATACAAATTATAGatgaatttatgtttttaaaactTAAGGTAACACAGGACGATGGCTTGCCACAACAAATATGTAGTGAATGTTTAGATCATTTTTCAAATAACAGTCAATTTAggaaaaaatgtgaaaattctCAGGATATtctggaaaaatattttaaaacatctTCATATATttcaaacacaaataaaattaaaattgaagtGGAACCAGACTATTcaacatttgaatttttaaatattgaaaatgttgaatttgattcaaaaatgagaGCAGAAGTTGTTTTAGATGAGAACGATTTGCCAAGTGGAGAAGATGAGGAATCAAATAGTAAATTAgatgaagaaattaaagatgaagatggtgatgaggatgatgatgataatgaaaatgaaatagatAGTGATTTAAGTGAAGATGatattgatgaaaattatgatgaaGAACAAGAAGACGAAGAATATCTTGATGAAAATTTAGAATGTAAAATATGTGGTAAAACATATAAAAGAGAAGCTCACTTATTTCGTCACATAGCATCTCATcaaaattatcataaattaaaaccaaagagaaaaaaacgtaTATTATCATCTTTAGTGCATTTATGCAATAATTGTGGCAGAAGATTTTCTAAATTAGATGCTCTACGAGAACATCAGCAGGATAGTAAATGTGATGCTTCACAAaATCCAAAGTGTCGTTACTGTAAAGAGGAATTTAATGATAAAGAATTATTAGAagaacatttaaaaaatttgcatCCAAAAGATCGTCCACATATGTGTCcaatttgtaaaaaaacatttcaaagtGTTTCAAATCGGAATACTCATATGCAATCACATAATAAagatgaTTCATTTAAATGTGAAATTTGTAACCAAGGATTTAAAagtaaagtttatttaaataaacataaaaagtcAGTTCATACAGTTGCACATCATGATTGTCCACATTGTTTACTTAAATTTGATAATACAGCCAAATTCGAaTATCATTTAAAGTCACATGATccaaataaaaagtataaatgtaaattttgtgATAAGTCATTTCTTCAGCATCATCATTTAGCTAACCATGAACGTACGCATACTGGATTAAGACCATTTCTCTGTAATATATGTGGGAAGAATTTTAAACAAGAATgcaattttaaattacatttaaggATTCACACTGGCGTTCGTCCTTATGTGTGCAATATTTGTAGTAAAGATTTTGTTCAACGTGGCTCGTTTGTAATGCATATGCGACAACATTCTGGAATTAGACCATATCAATGCGAACATTGTGGTAAAGATTTTGTTCAAAAATCATCATTGAATGTTCATCTTCGCACACATACCGGCGAAAAACCGTATAAATGTGGATCATGTGATAAGGCATTTGTTCAAgcacaacaattaaaatatcataaacATTCAGCACATGACGGTCCACCTGTTGGAAAAATTCGtgatataaataatgataCTATAATaacaatgacaacaacaacaacaaagtctGAGGTTCAAGctacaacaaatttaaatccAACTGTAAAACAATATCCATTTGTATGCACATTATGTAATAAGGGTTTTAAATTACCATCATCATTAACATCACATATGAAAATACATTTAGAAGATAGAAAACACATATGTAATCAATGTGGTAATTCATTTAAACGGGCTGAACATTTACGTATACATATTAATGGTGTTCATCTTAAACAAAAACCGTATTCATGTGAGTTGTGTCATAAAACATTTGCTCAATCTGGTGACAGAAATATTCATATGAGACGACATACTGGGGAAAAACCGCATTCTTGCACTTTTTGTAATAAAAGTTTTCGCCTACTTAAAGCAATGCGTGCGCATGCCAGAATACATACTGGCGAAAAGCCATACACGTGCGAATTTTGTCAACAGGACTTTATGACTTATACGGCATTAGcatcTCATACAATGAAGCATACTGAACGCGTtagaaaaattgataataatgaattgaaattaacaAATGTGGATAATGAAGCAATAATTTTAACAACGCCTTCTTCAGTATTTACTCAATCCcatcaataa
Protein Sequence
MTELDTEYSLEKTCRTCLRSDTNLDRFYSIFEKDTLNDIPIQIIDEFMFLKLKVTQDDGLPQQICSECLDHFSNNSQFRKKCENSQDILEKYFKTSSYISNTNKIKIEVEPDYSTFEFLNIENVEFDSKMRAEVVLDENDLPSGEDEESNSKLDEEIKDEDGDEDDDDNENEIDSDLSEDDIDENYDEEQEDEEYLDENLECKICGKTYKREAHLFRHIASHQNYHKLKPKRKKRILSSLVHLCNNCGRRFSKLDALREHQQDSKCDASQNPKCRYCKEEFNDKELLEEHLKNLHPKDRPHMCPICKKTFQSVSNRNTHMQSHNKDDSFKCEICNQGFKSKVYLNKHKKSVHTVAHHDCPHCLLKFDNTAKFEYHLKSHDPNKKYKCKFCDKSFLQHHHLANHERTHTGLRPFLCNICGKNFKQECNFKLHLRIHTGVRPYVCNICSKDFVQRGSFVMHMRQHSGIRPYQCEHCGKDFVQKSSLNVHLRTHTGEKPYKCGSCDKAFVQAQQLKYHKHSAHDGPPVGKIRDINNDTIITMTTTTTKSEVQATTNLNPTVKQYPFVCTLCNKGFKLPSSLTSHMKIHLEDRKHICNQCGNSFKRAEHLRIHINGVHLKQKPYSCELCHKTFAQSGDRNIHMRRHTGEKPHSCTFCNKSFRLLKAMRAHARIHTGEKPYTCEFCQQDFMTYTALASHTMKHTERVRKIDNNELKLTNVDNEAIILTTPSSVFTQSHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-