Priv012996.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
Atpaf2
Assembly
GCA_963082725.1
Location
OY720154.1:18814507-18822357[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.7e-05 0.00095 19.8 1.1 1 23 347 369 347 369 0.96
2 18 4.6e-06 0.00026 21.6 0.7 1 23 375 397 375 397 0.98
3 18 0.00013 0.0074 17.0 0.5 1 23 403 425 403 425 0.98
4 18 6.9e-05 0.0039 17.9 2.8 1 23 431 453 431 453 0.95
5 18 0.00011 0.0063 17.2 6.0 1 23 459 481 459 481 0.98
6 18 3.5e-05 0.002 18.8 4.1 1 23 487 509 487 509 0.97
7 18 8.5e-07 4.7e-05 23.9 5.0 1 23 515 537 515 537 0.98
8 18 2.5e-07 1.4e-05 25.5 2.5 1 23 543 565 543 565 0.97
9 18 0.00013 0.0073 17.0 6.7 1 23 571 593 571 593 0.97
10 18 5e-06 0.00028 21.5 5.9 1 23 599 621 599 621 0.98
11 18 2.4e-06 0.00013 22.5 4.2 1 23 627 649 627 649 0.98
12 18 2.8e-05 0.0016 19.1 8.7 1 23 655 677 655 677 0.98
13 18 6e-06 0.00033 21.2 6.7 1 23 683 705 683 705 0.98
14 18 3e-05 0.0017 19.0 7.7 1 23 711 733 711 733 0.98
15 18 0.00016 0.0087 16.8 6.8 1 23 739 762 739 762 0.95
16 18 0.00015 0.0086 16.8 0.3 1 23 768 790 768 790 0.97
17 18 0.015 0.81 10.6 3.9 1 23 800 822 800 822 0.98
18 18 8.2e-06 0.00046 20.8 1.7 1 23 828 850 828 850 0.96

Sequence Information

Coding Sequence
atgaatactGAAAACAATATACAATCGGAAGGAAATAATTCACAAAGCAGTCAGcATAATTTAATAAGACACGGAACTTCAACTTCTTCAACAGATATTTCAAGTCGTCTTAATCCATTAGCCCTTTCGAGTATTTCACcgtttaacggaaaatattttgtgttaaacTTGGGACCTTGTGTTTATAATCTACCAAGATTGGATAATGGAAAATCGCAgGATTTAGGACCAATTTCAATTCCAACTGATACAGCAATGTTGCATTCAATTCCAGGACCAGatACATCAAACTTATCTAATCACAATTTAAACTTATCAAATCAAAGTCATCAACCATTAGGTAATAATGGGGCGAATTCTACAGCACAATCACAACACCATTTGCAATTACAACTTAATTCACAAGGTCTTGTTGTATTGGattcacaaaatttaaaagaacaTAAAGTATTTTCACATCAATCCAATAATAATGTTAATCATATTAATTCACGTGCCCTAGAGCAGCAACTAAACAACGAACAATTACAAgtaCAACAACAagtattaaataatgaaatggaTCATTCatcaaatttacaaataatcaaagatgaaaaaacaaatatgagTAAATTAATTGCTCCACATTTCCTACATGGTTCTGATATAAAACCCCAATCGCATATGATGGATGTACGAACCGCTGATGGTTCGATTGTTAAAATATCAACTGGTATGCAAGATCAAGATTTAACTATGTATaaggTAAACATTGAAgatataaatcaatttttaaccTGTCATGAAATATTTGGTAAATTACCTGGTGATATGTTAACAATGCCACCACCAGGTAATAATACACCATCAACAAGTAATTCAAATATACCAAATACaaatcaaaatacaacaacaacgtCAAATACCATAAGTAATATATCAGATGCATCAACAAGTTCACAAAATATGATTTcaccaaaaatagaaaatgtatcAACAGTTGTATCAATGGATGGTACTGATGCAAATGGTAATCCAACAATAACACCAGCAATACATGCATGTGACATATGTGGAAAAATGTTTCCATTTCGTTATCAGCTTATTGTACATAGACGTTATCATAATGAACGTAAACCATTTACATGTCAAGTATGTGGACAAGCATTTACAACTTCACAAGAATTAACAAGACATGGTAAATCGCATCTTGGTGGAACAATGTTTACATGCAATGTTTGTTTTAATGTATTTGCAAATGATGCAAGTTTAGAACGTCATATGAAACGTCATTCAGCAGATAAACCATTTTTATGTACTCTTTGTCAAAAAACATTTGCTAGAAAAGAACATTTAGATAATCATGTAAGAAGCCATACTGGTGAAACACCATTTAGATGTCAATTTTGTCAAAAAACTTTTACACGCAAAGAACATATGGTTAATCATGTCCGTAAACATACAGGCGAAACACCTCATCGTTGTGATATTTGTAACAAATCATTTACACGGAAAGAGCATTATGTTAATCATGTTATGTGGCATACTGGTGAAACACCACATCAATGTACTGTTTGTGGTAAAAAGTACACAAGAAAAGAACATTTGGCTAATCATATGAGATCACATACAAATGATACACCATTCAGATGTGAAATATGTGGAAAATCGTTTACCAGAAAGGAACATTTCACAAATCACATACTTTGGCATACAGGTGAAACACCACATCGTTGTGATTTTTGTTCAAAGACATTTACACGTAAAGAACATTTACTTAATCATGTAAGACAGCATACAGGTGAATCACCACATCGTTGTGAATACTGTTCTAAGTCTTTTACACGAAAGGAACATTTAGTTAATCATATAAGGCAACATACAGGAGAAACACCATTTAAATGCACCTATTGTCCAAAACAATTCACGCGTAAAGATCATTTGGTTAATCATGTAAGACAACATACTGGTGAATCTCCACATAAATGTACACATTGTGCTAAAAGTTTTACAAGAAAGGAACATTTGACTAATCACATAAGGCAGCATACAGGAGAATCACCGCATCGTTGTCAATATTGTTCTAAATCATTTACACGAAAAGAACATTTAACTAATCATGTCagAATTCATACTGGTGATTCACCACATCGTTGTGAGTTTTGTCAAAAGACTTTTACACGTAAAGAACATTTAACCAATCATTTACGACAACATACTGGTGATAATCCACATTGTTGTAATGTATGTTCTAAACCATTTACCAGAAAGGaacatttaattaatcatATGAGTCGTTCACACTCTGGTGAAAGACCATTTGCTTGTGAAGAGTGTGGTAAATCATTTCCACTCAAAGGTAATTTACTATTTCACCAAAGAAGTCACAATAAAGGTAGTGCAGCAGAAAGACCATTCAGATGTGATTTATGCCCtaaagattttatttgtaaagGTCATCTTGTGTCACATCGACGTTCTCATTCAACTGAAAGACCACATGCATGTGATCAATGTGGTAAAACATTTGTTGAAAAGGGAAATATGTTACGTCATATGAAAAAACATTTACTTGAAACAGCATATGTTCAAATTCCACGACTTGCTCCACCAGCTACTGTAGGCGGAGTTCAACATTCAACAACACAAATTATTCAACCAATAACAACTGTTGTTAGTTCAATGAATTCAGCACCAACAACATCTACAAATAGTGTTGGTACAATAATTTCATCAATAACTGGAAACTATCCATCGCATTctcaacagcaacaacaacagcagcagcaacaacaacaacaacagcagcagcagcaagaacaacagcagcaacctCAATCGTCTGTTTCCATAATATCACATGTTGATCATACAATGAGTGgtgaaaagaaaagattttataaaaatatcaatgTGTTACACAATGATGGAAAGTATGAAATAACATTAGAtcatagaaaattaaaaactccCCATGGAACACCTTTTACTATTGAAAATGAACCATTAGCTTTAGCTGTAGCCACTGAATGGGAAAATCAGAAAGATACTATTAATCAAGCAACGATGCATCTGacGAGCCTTTGTAACACAGCCATCGATAATCCAAatcatttatcaaaaattgATATGGTTAATTATGTTCTTAACTTCTTAACCACTGACACAGTTTTATTTCAAACTGGGGATAATGATGATTTGTATGAAATACAATCAAAAGAATGGGACCCATTAATTGAGTGGTTTTGCACAAATTATAACGTTAAAGTGGACAAATCAAGAGATATTTTAACACCTCAGGTATCATCCgaaactaaaatgaaaatcagcAAGCATTTAATGTCTTATGATATTAAAACTTTACATGcTTATGTGTTTGCTGTTGACACTTTAAAGTCTATTATATTAACACTTGCCTGTTTAGATCGCAAAATTACAGTTGAAAGAGCGGTTTATTTATCACGTTTAGAAGAAGAATTTCAACTTAAATTTTGGGGACGAGTTGAATATGCACATGACCTAAGTCAATACGATTTACAAGCTAGACTTTCAGCTGCTGTTTTGTTCATACATTTTAATTCATCCAgtgtttttgtaaaagaaaaattggttATGTAA
Protein Sequence
MNTENNIQSEGNNSQSSQHNLIRHGTSTSSTDISSRLNPLALSSISPFNGKYFVLNLGPCVYNLPRLDNGKSQDLGPISIPTDTAMLHSIPGPDTSNLSNHNLNLSNQSHQPLGNNGANSTAQSQHHLQLQLNSQGLVVLDSQNLKEHKVFSHQSNNNVNHINSRALEQQLNNEQLQVQQQVLNNEMDHSSNLQIIKDEKTNMSKLIAPHFLHGSDIKPQSHMMDVRTADGSIVKISTGMQDQDLTMYKVNIEDINQFLTCHEIFGKLPGDMLTMPPPGNNTPSTSNSNIPNTNQNTTTTSNTISNISDASTSSQNMISPKIENVSTVVSMDGTDANGNPTITPAIHACDICGKMFPFRYQLIVHRRYHNERKPFTCQVCGQAFTTSQELTRHGKSHLGGTMFTCNVCFNVFANDASLERHMKRHSADKPFLCTLCQKTFARKEHLDNHVRSHTGETPFRCQFCQKTFTRKEHMVNHVRKHTGETPHRCDICNKSFTRKEHYVNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCSKSFTRKEHLVNHIRQHTGETPFKCTYCPKQFTRKDHLVNHVRQHTGESPHKCTHCAKSFTRKEHLTNHIRQHTGESPHRCQYCSKSFTRKEHLTNHVRIHTGDSPHRCEFCQKTFTRKEHLTNHLRQHTGDNPHCCNVCSKPFTRKEHLINHMSRSHSGERPFACEECGKSFPLKGNLLFHQRSHNKGSAAERPFRCDLCPKDFICKGHLVSHRRSHSTERPHACDQCGKTFVEKGNMLRHMKKHLLETAYVQIPRLAPPATVGGVQHSTTQIIQPITTVVSSMNSAPTTSTNSVGTIISSITGNYPSHSQQQQQQQQQQQQQQQQQQEQQQQPQSSVSIISHVDHTMSGEKKRFYKNINVLHNDGKYEITLDHRKLKTPHGTPFTIENEPLALAVATEWENQKDTINQATMHLTSLCNTAIDNPNHLSKIDMVNYVLNFLTTDTVLFQTGDNDDLYEIQSKEWDPLIEWFCTNYNVKVDKSRDILTPQVSSETKMKISKHLMSYDIKTLHAYVFAVDTLKSIILTLACLDRKITVERAVYLSRLEEEFQLKFWGRVEYAHDLSQYDLQARLSAAVLFIHFNSSSVFVKEKLVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-