Priv014504.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pedicia rivosa
Gene Symbol
-
Assembly
GCA_963082725.1
Location
OY720154.1:34294509-34306085[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 0.0001 0.0056 17.3 0.4 1 23 113 135 113 135 0.97
2 38 0.003 0.17 12.7 5.2 1 23 141 163 141 163 0.97
3 38 0.03 1.7 9.6 2.1 1 23 168 190 168 190 0.98
4 38 6.8e-05 0.0038 17.9 4.3 1 23 195 217 195 217 0.99
5 38 6.8e-05 0.0038 17.9 2.1 2 23 223 245 222 245 0.95
6 38 0.00086 0.048 14.4 2.7 1 23 251 273 251 273 0.95
7 38 0.003 0.17 12.7 4.7 1 23 279 301 279 301 0.99
8 38 0.023 1.3 9.9 1.1 1 23 307 329 307 329 0.97
9 38 0.00011 0.0061 17.2 0.6 1 23 342 364 342 364 0.98
10 38 0.0003 0.017 15.8 0.2 1 23 373 395 373 395 0.99
11 38 2.4e-05 0.0014 19.3 1.3 1 23 401 423 401 423 0.99
12 38 0.00019 0.011 16.5 1.3 1 23 429 451 429 451 0.99
13 38 4.3e-05 0.0024 18.5 1.6 1 23 457 480 457 480 0.97
14 38 0.0013 0.073 13.8 1.7 1 23 652 674 652 674 0.98
15 38 0.0017 0.097 13.4 0.8 1 23 680 702 680 702 0.99
16 38 0.0018 0.099 13.4 2.4 2 23 709 730 708 730 0.97
17 38 2.1e-07 1.2e-05 25.8 0.4 1 23 736 758 736 758 0.99
18 38 0.00038 0.021 15.5 2.8 1 23 764 786 764 787 0.95
19 38 7.9e-05 0.0044 17.7 1.9 1 23 1045 1067 1045 1067 0.98
20 38 1.1e-05 0.00062 20.3 0.6 1 23 1072 1094 1072 1094 0.95
21 38 0.00016 0.0091 16.7 1.4 1 23 1100 1122 1100 1122 0.98
22 38 0.59 33 5.5 2.0 1 23 1127 1149 1127 1149 0.95
23 38 0.002 0.11 13.3 2.1 1 23 1154 1176 1154 1176 0.99
24 38 0.0024 0.14 13.0 1.5 1 23 1182 1205 1182 1205 0.93
25 38 0.00019 0.011 16.5 4.3 1 23 1211 1233 1211 1233 0.99
26 38 3e-05 0.0017 19.0 0.7 1 23 1239 1261 1239 1261 0.99
27 38 8.2e-06 0.00046 20.8 0.7 2 23 1268 1291 1267 1291 0.92
28 38 0.043 2.4 9.1 0.3 1 23 1306 1328 1306 1328 0.98
29 38 6.2e-05 0.0035 18.0 0.5 2 23 1335 1356 1334 1356 0.97
30 38 2.2e-06 0.00012 22.6 2.8 1 23 1362 1384 1362 1384 0.99
31 38 0.00041 0.023 15.4 1.3 1 23 1390 1412 1390 1412 0.97
32 38 0.0045 0.25 12.1 0.1 2 23 1542 1563 1541 1563 0.96
33 38 1.6 88 4.1 1.0 1 14 1569 1582 1569 1584 0.90
34 38 0.00065 0.036 14.8 0.5 1 23 1586 1608 1586 1608 0.99
35 38 0.0001 0.0058 17.3 0.6 1 23 1614 1636 1614 1636 0.99
36 38 4.4e-06 0.00025 21.6 0.5 1 23 1642 1664 1642 1664 0.99
37 38 1.9e-07 1e-05 25.9 0.9 1 23 1670 1692 1670 1692 0.99
38 38 0.003 0.17 12.7 3.5 1 23 1698 1720 1698 1721 0.95

Sequence Information

Coding Sequence
ATGGTTTATCTTTTATGTAAACCCACAATTACTGAAAATCAAAGTACTATTTTTGGTAATAATCTAGAAATTATGGCAATAACTCAAGATAAAAgtgatttaaatattcttaatgAGAAATTACAAAATGCAAATGTGGAAAGTACTTCAGAAAGTTTAGAAAAACCCTTTTGTTCCATATTTTTACCGGAATCAACGATCGTTTCCAGTGAAGAAGCTTTTAATCAGACTGAAGAAAAGGATGATAATGACCacgaaaaagaaataaaaaaaaataatcctaTCAAACGTAAATACGttattaaaacaaagaaatattcTAAAGAGAAATctgaatataaatgtaaaatatgtgaaaaagtttttaaacGTGTAAGAGCATTATTGGAACATAAAATAGTTCATacagaagaaaagaaacatgaatgtaatatttgtaataaaaaatttcatttaaaaacatCACTTCAAGCCCATAAAAAAGTACATGCTGAAAGAAAATTCACTTGTGAGATATGCAGTATTTCATACAAAGTTCACAGAGAactttatttacataaattaacgCATTCTTCACCTACATACAAATGTAATCaatgtaataaaatgtttagtaataatgtttttttaagtAGACATAAAAAACGTCACGATGGTATTAAATTACCCTGCGATCAATGTAATCAACATTTTTCTAGTAAATCGAGCCTAAAAACACATCAAGACACAATTCATCTAGGTATTAAGAAATTTGAGTGTAttgtatgtaaaaaaaaattttcaaattctgGGAATTTTAAACATCACCTCCTGGTTCATACTGgCGAGAAACCTTACTCATGTAATGAATGTGATAAATCATTTGCATGCACAACAACTTTAAGAAATCATAAAAGAACACATTTAccgaaaaatcaatttaaatgtGTATTTTGTGatgaaatatttgataaaCGTTTTCAATTAGTTGTTCATTTTAAATTGCATGAAGATGAGGAACAACTTCCGAacaaacttaaattttatgaatgtcaAATATGCAATAAAGTCTTATCATCCTCAAAATCACTTGAAAATCATTCGCGTTTACACAAGGGAAATACGGGAGatataaattatgaatgtCAAATTTGCAATAAATTACTATCAAGTTCTTATGCTTTAAAAGGTCACATTAGGATACATACTGGAGAAACACCTTACAAATGTAAATTTTGCCCAACAGCTTTTAAATCATATTCTGCACTTATTATTCATACCCGAAAACATACAGGCGAAAACCCATATAAATGCAGTGTATGCAATAAAGCATTAACTAATGCCAGTATGCTAAAATTTCATATGAGAAAACATACAGGAGAGAAACCTCACAAATGTTTATATTGCGATAAACATTTCTCTATTCCTGGAAATTTATTATCTCATATAAGAGTTGTTCACACTGAAAATGTAGAGCTAAGAAATGCGTGGATTAATGCATTACATCTAGAAGAGAATTGGAAACCAAATTTATCAACAGTTATTTGTTCTAaacattttgaaaaagaatatttttcagaCTGTATTTTGAGTGAAAGTGCAATTCCTACAATTTTTGGTccaaataatttgaaaaagATAACACAAGATGATATCTTACCTAATTTAATATGTTTAAATTGTGAAGAAAAAGTTCATGAAtcttacaaattaaaaatagtatgtgaaaaatcaaataaactattgaaaaatttattcgaGAATTCATCTAGAAGTGATCTAAATTTGAAGTTAGAAGGTTATGAAGATGAAAcggaaatatttaaaacagaaaacgaagaaatggaaaatgaggaaaataaattttgttctatATTTCTACCTGAAGTAGCAATAATCGAAAATAATGAAGaccaattaaatcaaataaatatattaaaggAGGATGATGATACCTTGAAAAGAGATAATCGTTACGAATGCCACATCTGTAAAAAAGTCCTAGTATCATCACATACACTTGATGGACATTTGAGAATACATAGTGgtGAAAAACCATTTAAGTGTAAATTCTGTCCAGATGCATTTAAGTATGTATCTAATCTTATTGTTCATGAAAGGAAACATACAGGAATTAAACCTCAAGTCtgtaaaatttgtgaaaaagtTTTACATAGTATTGCACATCTTAAAGTTCATATGAGAAAACATACAgGCGAAAAACCTTTTCAATGTCCATattgtgataaaaaatttacagtTAACGGCAGTTTAACAATTCATATTAGAATTCATAAAggGCAACAACGTTTTCCATGCAAGCAATGTGAAGCGAAATATGATCGTGCATCTCATTTAAGGGCACACATTAAACAACATCATGAAAAAGAGTCTGAAATAATCGAAgaagAAGGTGCTGTGGCTTTAGGCGACGACGCAAATGTAATTCCTCAGGATCATAAATCTAATTCTTGTTTAATATGCCTAAAAACTGATGcaattacattaatttataCTACGTTTGCATCTGAAGTTTCGCTAGcggataaaataaaaagttttgcTGATGTCACTATCAGTGAAAAGAATGATGGTTTTCTCTGTGCAGACTGTGTTGTAAAAATACATGATTgctataaatttaaaaaacaatgtgaaaattcattcaaaatatttaaaaatatgcatactgtaaaaaaaaaatcagctactgaaaatattgaaatgaatgaacctatttctgttttaaataaaagtcaaaTTGAACCAGAGATTCTACATTTTAAACCTTCAGAACAAATAGTAAATGATCAATTTTGTTCTGTATTTCTTTCtgaagataatttttttgaacaagaaatttttaatacgTGCTTAGATATCAAAGAAGAACCAAATGACTTGGATTTAATTATCCCtcaagaagaaattaaaagagaaattattgATGTAATTAATATGGATGATGTTTTATTGATAAACGATAATCCTGCACGGAATAGTACAAGAAATGAATGTACAAAGAAGATTGAATTAGATgaagatttattaaaacagaaaGTATATGCGGCTAAtgaagtcgaaaaattttatgaatcaaataataataaaacaaaggaaagaaaaacGTCAGTggataaacaagaaaataaattcaagtgTAAAATTTGTAATCGACAATACAAAACTAGTCAGAGTTTAGAATTACATATACAAAATCATGAACATATCAAATATAAGTGTGATAAATGTGAGAAAGTTTTTTCTCGTAATTCCTCTTTATTAGAACATGAAATTTTACACACAAATGAAACACCTTACGAATGTGATAAATGCcctaaaaaatttcaacaaaaagttaaattgaTTTCACACAAACGATGGCACAAAACAAGTAAATTTATGTGTGAAATATGCAGTAGCCAATTTATATCTATTCAAAGTTTAAatcatcataaattatttcatgaaccgccaaaatataaatgtaatgaATGTGAAAAACTATTTCATACATCAGTTGGATTGCGCATTCATGAAAAAAGGCATGAAGGTATTATAAGACATCATTGTGATGAATGTGGTAAAACACTTTCAACTAATAACGCATTAATAATGCATAAAAAAGCAGTTCATCTTGGAATTAAAAGATATAAATgtgttatttgtaataaagAGTTCTTTAATTCCTATAATTATCATCTACATATTCGTCGTCATACAGgACAAAAAAGTTTCCAGTGTCCAGTTTGTAATAAAACTCTTCGAAATTCATTAACCCTATCGAATCATATGAAAATTCATACAgGTAAAGGTCGTTTGCAATGCGAAGTCTGTAATAAAACTCTTTCAAATTCATCAACTTTGAAAAATCATATGAGAATGAATGCACACAGCCTCATAGGACATTCAAGAATACACACAGgtGAAAAACCGTATAAGTGTGGATTTTGTCCGGAAACTTTTGTATTCATTTCTGCTCGAATAATTCATGAAAGAAAACATACGGGAGTAAAACATCAGGTATGTGGTGTTTGTCAAAAAGTATTAAACAGCCCTGCTCATTTGAGAGTTCATATGAGAAAACACACAGGTGAGAAACCTTATAAATGTCATTTATGTGAGAAGAGATTTTCAACTAACGGTTATTTAACAGTTCATCTTAGAATTCATAAAGGAGAACAACGGTTTCCATGCAATCAATGTGATGCTAAATATGATCGTTTATCTCATTTAAAATCTCATATTGAACAACatgaaaagaaggaaaatgttATTATTCCAGATGATGGTTTACCAACTAACATCTGCCTAAGTTGTGTTGAAAAAGTTAATAATagttgtaaattaaaattgcaaTGTGAAGCTTcaagtgaatttttgtttaaacaaattttGGATCAACAACCACTTCATGCAAAAACTCTAGAAGAATCAATAATTTGcatgaaagaagaaataacAGGAAACGAAAAAGAATTCTGCTCCATATTTTTACCAGATTTAACTGTGGATCAAATCTTAGAACCTAGCGATTCGGAGAAATTTATTGAGCCAATTgctgaaaaaattaaaggagCAAAACGTTCTGTAACTAGGAAAAAAAGATTACAAAGAAATAAGCAATCAAATCAAACAGATAATCAATGCGATGAATGTGGAAAAATTTTTTCTGGGAATTTGGCTTTAGTTGAACATAAGTTAATTCATAGTAATGAGACTCCTTATGAGTGTAATATTTGTTCGCATAAATTTCAACAAAGAAgtGATAAACTTTATGAGTGTcatgtttgtaaaaaaatattatcaacatCTTTCGCACTTGCGGGTCATCTTAGAATACACTCAgGTGAAACCCCGTTTAAGTGTAAATATTGCACAGCAGCTTTCAAATATGCGTCCGGGTTAATAATTCATGAGAGAAAACATACAGGCGATAAACGCTACGAATGTGATGTATGtcaaaaagttttaaatagTCCGGCTCATCTTCAAGTTCATATGAGAAAACATACAGGAGAGAAACCTTTTCAATGCAGCTTTTGTGACAAAACGTTTTCAACTAACGGAAGCTTGACAGTTCATATTAGAATACATAAGGgAGAGCAACGTTTTCCATGCAAACAATGTGATGCAAAATATGACCGTTTAACTCATTTAAATTCTCACATGGAACAGCATCATAAAATTCAGTCTGCATTAATAGAAgaagaaaatattattgagGAGATGAGCGAATTTAAAGAAGATTCAGGCTCTGAATCTTag
Protein Sequence
MVYLLCKPTITENQSTIFGNNLEIMAITQDKSDLNILNEKLQNANVESTSESLEKPFCSIFLPESTIVSSEEAFNQTEEKDDNDHEKEIKKNNPIKRKYVIKTKKYSKEKSEYKCKICEKVFKRVRALLEHKIVHTEEKKHECNICNKKFHLKTSLQAHKKVHAERKFTCEICSISYKVHRELYLHKLTHSSPTYKCNQCNKMFSNNVFLSRHKKRHDGIKLPCDQCNQHFSSKSSLKTHQDTIHLGIKKFECIVCKKKFSNSGNFKHHLLVHTGEKPYSCNECDKSFACTTTLRNHKRTHLPKNQFKCVFCDEIFDKRFQLVVHFKLHEDEEQLPNKLKFYECQICNKVLSSSKSLENHSRLHKGNTGDINYECQICNKLLSSSYALKGHIRIHTGETPYKCKFCPTAFKSYSALIIHTRKHTGENPYKCSVCNKALTNASMLKFHMRKHTGEKPHKCLYCDKHFSIPGNLLSHIRVVHTENVELRNAWINALHLEENWKPNLSTVICSKHFEKEYFSDCILSESAIPTIFGPNNLKKITQDDILPNLICLNCEEKVHESYKLKIVCEKSNKLLKNLFENSSRSDLNLKLEGYEDETEIFKTENEEMENEENKFCSIFLPEVAIIENNEDQLNQINILKEDDDTLKRDNRYECHICKKVLVSSHTLDGHLRIHSGEKPFKCKFCPDAFKYVSNLIVHERKHTGIKPQVCKICEKVLHSIAHLKVHMRKHTGEKPFQCPYCDKKFTVNGSLTIHIRIHKGQQRFPCKQCEAKYDRASHLRAHIKQHHEKESEIIEEEGAVALGDDANVIPQDHKSNSCLICLKTDAITLIYTTFASEVSLADKIKSFADVTISEKNDGFLCADCVVKIHDCYKFKKQCENSFKIFKNMHTVKKKSATENIEMNEPISVLNKSQIEPEILHFKPSEQIVNDQFCSVFLSEDNFFEQEIFNTCLDIKEEPNDLDLIIPQEEIKREIIDVINMDDVLLINDNPARNSTRNECTKKIELDEDLLKQKVYAANEVEKFYESNNNKTKERKTSVDKQENKFKCKICNRQYKTSQSLELHIQNHEHIKYKCDKCEKVFSRNSSLLEHEILHTNETPYECDKCPKKFQQKVKLISHKRWHKTSKFMCEICSSQFISIQSLNHHKLFHEPPKYKCNECEKLFHTSVGLRIHEKRHEGIIRHHCDECGKTLSTNNALIMHKKAVHLGIKRYKCVICNKEFFNSYNYHLHIRRHTGQKSFQCPVCNKTLRNSLTLSNHMKIHTGKGRLQCEVCNKTLSNSSTLKNHMRMNAHSLIGHSRIHTGEKPYKCGFCPETFVFISARIIHERKHTGVKHQVCGVCQKVLNSPAHLRVHMRKHTGEKPYKCHLCEKRFSTNGYLTVHLRIHKGEQRFPCNQCDAKYDRLSHLKSHIEQHEKKENVIIPDDGLPTNICLSCVEKVNNSCKLKLQCEASSEFLFKQILDQQPLHAKTLEESIICMKEEITGNEKEFCSIFLPDLTVDQILEPSDSEKFIEPIAEKIKGAKRSVTRKKRLQRNKQSNQTDNQCDECGKIFSGNLALVEHKLIHSNETPYECNICSHKFQQRSDKLYECHVCKKILSTSFALAGHLRIHSGETPFKCKYCTAAFKYASGLIIHERKHTGDKRYECDVCQKVLNSPAHLQVHMRKHTGEKPFQCSFCDKTFSTNGSLTVHIRIHKGEQRFPCKQCDAKYDRLTHLNSHMEQHHKIQSALIEEENIIEEMSEFKEDSGSES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-