Priv004531.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- lola
- Assembly
- GCA_963082725.1
- Location
- OY720152.1:14225329-14232161[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-12 1.7e-09 37.5 0.0 2 45 429 472 428 472 0.92 2 2 0.28 3.2e+02 1.4 0.6 4 20 571 586 570 586 0.91
Sequence Information
- Coding Sequence
- atgGGTAGCAGTGAAGGTCAAACATATTGCCTCCGTTGGAATAatcataaatcaaatttagttGAAATATTAGATgcattaataaaaatggaatCATATGTTGATTGTACAATATATGTTGATGatcaaatacaatttaaagCACATCGTGTTGTATTAGCTGCAAATTCACCATATTTTCAATCCATATTACAAGATGTACCAATGGATCATTGCAGTATACTATTTCCGGGTGTTAAAAGTTTTGAGATGCGTGCACTACTTGAATATATGTATACTGGTGAAGTAAATGTAACACAAAGTCAAATACCAAGAATTATGAAAATTGCAGAACAGTTAGAGGTTAAAGGTTTATTTGATATGACAGATTTACGTGATATTAAAGACGatacaacatcaacaacaacaacaacaactggtACAGGAACATCTAGTGCACAACATCTACAACAACAGCAAGAACAACAGCAAAACAATCATTATggacataataataatagtacaAAAGGAAATCATCATataaataatcatcatcataataataatcatcatactaataataataataataataataatattaataataatagtaacaataatcaaaatcaattacacaatataacaaataataataataacaataatataaatcatCAATCGTCAACATCACCAATAATatcaacatcaacaaatattatagctggacaacaacaaaataattcaatatcaCCACCAATAACATATCATCATAATTATAAATCACcatatacaaatttatattcacGTAGTCCAATACCATCTGTATCAGATAGACTACCACAATGGCCACAACATTTACCATCACCCTTACCCACAACCCAACATTTACATAATGCTGCTGCAGCAATGTTAAGTTCTGTATATGAGACTGGATCTGATATGAATCCATTGAAACgtaaaaaattatcatcaatATCGAGTATGTTAATGTCACGTGATACACCAATATTAAGAAATGTATTAGCTCAAACAAATATTGCTGATTCATCACAAACAGTACCACTTATTTGTCAAAATATTGGTAATAATGATAGAAGTGATAGACAAAGTACACATTCTAATGGTACAGATTATTCAGATAAgAAGAATAAATATGAAGAACCCCATTCACCATATACAGACAAATCATTTGAAGATGATACAATGGAAACCCAATCACAATCTTTTTCTGGTTCAGATTCAAGAATTGCATCATATGTACCACAACAGAAACCAGAATGGAAACGTTATAAACAATATACAAGAAATGATATATTATCAGCAATTGAGTGTGTCCGTAATGGAATGAGTGCATTACAGGCATCAAGAAAATTTGGTGTGCCATCAAGAACACTTTAtgataaagtaaaaaaattaggTATTACAACTGGACGTCCAATGAATCGTGGTATGAAACGTAGTCCAAGCCATGGTAGTAGTCCAGCTGGTTTTCCATATGGTATAAGTGGTACAAGTAGTCCGTATAGTCTTCATAGTCAAGAAAATCCATCACAATCGCAATTACAAGTAGATATGAATGAACGTAATGAACGTGATAGTAGAGAACGTGATCATTTACCACCAACGATCCCTCATTCAGCGGCTGCATTATTAGATGCAACATTTTTACAACAAGCATTGGAAGCACGTGGTGGTGATATTGCTGGACGTGATGCATTACATGCAATGGCATTTGCGGCAGCTGCACACGCTGCAGTTAATGGTATTTCAACAAGTCCTGGTACACATGGTACTGCCCGATCACCTAGTCCTGGTATACTTATGAAATATATGCGACCATCAACACCAATTGATGAACAAACAGATAAAGATGATGAAGATTGTGTTGAAGATTTATCAATgggtaataaaaaaaaaattgaacagcAAATTAATATACCACAAATATCACCACCATCAATATCAccattacaattacaattaccATCATCACCACCaataacacaacaacaattaccACAATTacatcagcaacaacaacagcagggTGTTATTATGCCACCAATGACAAAGGTACCACCAATAAAGGAAGAGTTCAAAGAAATTAAACGGGAGATTACCACCGAAGATGATTCAAGagactaa
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIYVDDQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVKSFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTDLRDIKDDTTSTTTTTTGTGTSSAQHLQQQQEQQQNNHYGHNNNSTKGNHHINNHHHNNNHHTNNNNNNNNINNNSNNNQNQLHNITNNNNNNNINHQSSTSPIISTSTNIIAGQQQNNSISPPITYHHNYKSPYTNLYSRSPIPSVSDRLPQWPQHLPSPLPTTQHLHNAAAAMLSSVYETGSDMNPLKRKKLSSISSMLMSRDTPILRNVLAQTNIADSSQTVPLICQNIGNNDRSDRQSTHSNGTDYSDKKNKYEEPHSPYTDKSFEDDTMETQSQSFSGSDSRIASYVPQQKPEWKRYKQYTRNDILSAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRGMKRSPSHGSSPAGFPYGISGTSSPYSLHSQENPSQSQLQVDMNERNERDSRERDHLPPTIPHSAAALLDATFLQQALEARGGDIAGRDALHAMAFAAAAHAAVNGISTSPGTHGTARSPSPGILMKYMRPSTPIDEQTDKDDEDCVEDLSMGNKKKIEQQINIPQISPPSISPLQLQLPSSPPITQQQLPQLHQQQQQQGVIMPPMTKVPPIKEEFKEIKREITTEDDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164090;
- 90% Identity
- iTF_01164090;
- 80% Identity
- iTF_01164090;