Priv015983.1
Basic Information
- Insect
- Pedicia rivosa
- Gene Symbol
- bab1
- Assembly
- GCA_963082725.1
- Location
- OY720155.1:14140008-14157772[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-12 9.1e-09 35.2 0.0 1 39 452 491 452 495 0.90 2 4 2.8e-12 3.2e-09 36.6 0.1 1 39 506 544 506 547 0.94 3 4 7.4e-18 8.6e-15 54.5 0.0 1 45 561 606 561 606 0.98 4 4 4.6e-18 5.3e-15 55.1 0.0 1 43 613 656 613 657 0.96
Sequence Information
- Coding Sequence
- ATGTTTCCTCCGGATCGTCATCAATATTTCAGCTTAAGATGGaataattatcaaaataatatgaCATCGGTATTTCATCAATTACTGGAAAATCAGTCATTTGTTGATGTAACACTTGCATGTGagaataattcattaaaagcACATAAGgTTGTACTTTCAGCATGTTCaacattttttcaaaaattacttTTGGAAAATCCGTGCAAACATGCAACTATTATAATGCCATCTGATATTTGTTTTGCAGACTTGCAATTCATCATACAATTTGTTTACCGTGGTGAAATTGATGTGTCAGAAACTGAATTACagAGCCTTCTGCGAACTGCTGAACatcttaaaataaaaggacTTTGTGAGATTAAAGAAAGCTGTGATGGTTTTACACAACCATGTGTTAAacgtaaattaaaatattccaaaacatcaactacaacaaaaacaacaacaacaacatcaacagatgatattaataaaagtaatttaaattcacttaaaaataaaaaaaatacaaaagactCAATAGATTTCAAAGATGAtatgaaacaacaaaatgaaacacCGACAATAATATTGGAACCACGAATAACAAGTCACGATACTAGAGAGAAAAACATGACCAGTCTCGGAATGGGAATGGGCATGAATGGGTCTATGATGGGAATATCGATGCAATTTTTAGATTTTGCGCCAGAACCACCAGCACCATCAGCCACACCTGTTACTGAACACATCGATTTTAATTGTCCTTCCAATTCAACACAAAACGAAGAAATCCGTGTCAAATTTGAAACGTTAAGATCACTGGATCCTGATACATTAGACGTTGAACGTatatcacaacaacaacaacattcaATACACCAATTACAACAGCCACATACACAACAGCAATCACAGTCACAGAAtcaaacacaacaacaaaaccatCAGCAACagaatcaacaacaacaacaacagcagcagcaacaacagcaacaaaatcaacaacaacagcaacaacaacaatcacagCAGCAGCATCATCGACAACAAAGGCACACAAATAGAACACATCAAAATCGTCACACAGCAGATACACTTATAAAATCAGTAATGGATGAACAAAATAGAACAAATTCAATGGATGTTGATCCTGGTATGGAACATGATCATGGTCCATTACATGGTATGATTATAACACCAGAAATAGTTACAATGATGACACCAACTCACATGGatCTTTATCAATCCGATACAAGTGAAGATTCAAATATGTTAAATAATAGTGATTCAccgaatataaaaatagagtATACACAATTGACTGGTCATAATGATTCACGTAATTTAACTGGTCCAAAAACTTGGACACAAGAAGATATGGAATCGGCATTAGATGCTTTGAGAAATCATAATATGAGCTTAACTAAGGCTTCTGTAACGTACGGAATACCATCAACAACATTATGGCAAAGAGCACATCGTTTAGGTATTGATACACCGAAAAAAGAAGGACCAACAAAATCATGGAGTGAAGATTCATTAAATAGTGCATTAGATGCACTGAGAACTGGTACAATATCAGCTAATAAAGCATCAAAAGCGTATGGGATTCCATCGTCaacattatataaaattgcaCGTCGAGAAGGAATACGTTTAGCGGCACCATTTAATGCGGCACCAACAACATGGACACCAGAAGACTTGGAACGTGCACTAGAAGCGATTAGAAGTGGTGCTGCATCTGTTCAAAAAGCTAGTACTGAATTTGGAATACCAACTGGTACACTTTATGGACGATGTAAAAGAGAAGGTATCGAACTGTCTAGATCAAATCCGACACCTTGGTCTGAAGATGCTATGATGGATGCGTTAGAAGCTGTTAGagTGGGACAAATGTCAATAAATCAAGCTGCCATTCATTTCAATCTGCCTTATAGTTCATTATATGGTCGCTTTAAAAGAGGAAAATATGATTCTGGTTCTGGTGAAGGTTCACAATTAATTGATACAAGTCCAGAAAATAcaCAGCAATATAGTCCAGTACTTCAATCGAATCCACAAAATAATCAGGGATCATCATCTTGCATACCAGGTCAGAATACAAATAGTCCAGATgtatttcaaataaaacaagaaagaagttga
- Protein Sequence
- MFPPDRHQYFSLRWNNYQNNMTSVFHQLLENQSFVDVTLACENNSLKAHKVVLSACSTFFQKLLLENPCKHATIIMPSDICFADLQFIIQFVYRGEIDVSETELQSLLRTAEHLKIKGLCEIKESCDGFTQPCVKRKLKYSKTSTTTKTTTTTSTDDINKSNLNSLKNKKNTKDSIDFKDDMKQQNETPTIILEPRITSHDTREKNMTSLGMGMGMNGSMMGISMQFLDFAPEPPAPSATPVTEHIDFNCPSNSTQNEEIRVKFETLRSLDPDTLDVERISQQQQHSIHQLQQPHTQQQSQSQNQTQQQNHQQQNQQQQQQQQQQQQQNQQQQQQQQSQQQHHRQQRHTNRTHQNRHTADTLIKSVMDEQNRTNSMDVDPGMEHDHGPLHGMIITPEIVTMMTPTHMDLYQSDTSEDSNMLNNSDSPNIKIEYTQLTGHNDSRNLTGPKTWTQEDMESALDALRNHNMSLTKASVTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDSLNSALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRSGAASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMDALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRGKYDSGSGEGSQLIDTSPENTQQYSPVLQSNPQNNQGSSSCIPGQNTNSPDVFQIKQERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164081;
- 90% Identity
- iTF_01164081;
- 80% Identity
- iTF_01164081;