Basic Information

Insect: Pediacus dermestoides
Gene Symbol: rn
Assembly: GCA_963942485.1
Location: OZ012626.1:36889764-36956983[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.2 8.4e+02 1.2 0.2 1 8 252 259 252 265 0.89

2 7 0.49 45 5.2 0.1 8 23 600 615 599 615 0.94

3 7 0.00052 0.047 14.6 3.7 1 23 622 644 622 644 0.99

4 7 1.6e-07 1.5e-05 25.6 3.9 1 23 650 672 650 672 0.99

5 7 0.0024 0.21 12.5 4.4 1 21 678 700 678 702 0.93

6 7 0.0031 0.29 12.1 2.0 1 20 708 727 708 730 0.93

7 7 3.5e-06 0.00032 21.4 2.9 1 23 739 761 739 761 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.2	8.4e+02	1.2	0.2	1	8	252	259	252	265	0.89
2	7	0.49	45	5.2	0.1	8	23	600	615	599	615	0.94
3	7	0.00052	0.047	14.6	3.7	1	23	622	644	622	644	0.99
4	7	1.6e-07	1.5e-05	25.6	3.9	1	23	650	672	650	672	0.99
5	7	0.0024	0.21	12.5	4.4	1	21	678	700	678	702	0.93
6	7	0.0031	0.29	12.1	2.0	1	20	708	727	708	730	0.93
7	7	3.5e-06	0.00032	21.4	2.9	1	23	739	761	739	761	0.97

Sequence Information

Coding Sequence: ATGGAAGCGAAATTAACGACGGTGCGGCCAATTCCAGAGGCTGCAATGGACAGTTCCGACTCAAGTGATTCATGTGCAACAAACAATAACGATAACACAAGTATAAGTTTGTACAAGCCAAGTTTCAAGTATAACGATATTGTTAATAAACTGGACAGTTATAACAATAACCAATTGTTGCTTCCGACGCAGTTTTACAAGACTTTGTTGGCCAAAGCTGTGCTGTCCAGCAACGATGACAAGAGCaatgtttacaaaaatatgtttttccaTAAGGACAGAGACTTTGAACAGAAAGCCTTTGGTTGGGACGGCGCCCAGTCGGGGGGCAGCCCGTCAGGGCCTCAAACTGGAGGCGTTGGCGGTCAAGGTGCCCAAGGCCTGGTGCACTGGATGAGTGTTATGGCCGAACACATGGATCCAGCCGTATCCCACTACATGTCTTGGAATCAAGAGCAGTGTGGACAACACGGCAAAGATGACTACCCAAATTGGACTAGAAATAGCATGGGTATCAACAAGCAAGGCTACGAGTCTAAGATGAACGAACACAATCAAATGCAAAAAgTGTATGCTGGCATGGAGGACCACCACATGGCGGGCACACCAGGACTCTATACATCTGGCAGATCGACGTCCAGCAGCTCTAGTCCGGGAGTAGCAGGCTCTAGCCCGGCTCTGCTGGTGGTACCGCAACCCATCAACGCCTCGAAAATGGGCGGCTTGCAAAACGGCGGTCCACAACCCCGAAAATATCAATGCAAAATGTGCCCCCAGCCTGCTTTTTTCTCACGCGGATATGCAAATTGTTCTTACTTCTTAGCCCTTACCATCATCGCCTTGGCACTACATTTAATACAAACTGCTCATATGGCCCATACTGATTTTTCCATGTGGTATTCACTTTCCCCCTATTTGAATACAACCGGCCAAACTAAACTGGAGGGTAGATTAGAATATCGCAGTGGAGGTTTGGATTTCCACCAACCTCCAATGTTACTGGAAAACTCTCAAAATTATTCCCACCTCCAGAGATCGATCGATACGCTCCGATCTTTGGGGGATCGATTGGGCGATCGAAATGTGGACTTGCGACTCAACTTGCACCATCAAGACCGACTATCGGAtcgaaatttgaatttgaatgaTCGACCGAATCAAGGCGGCAGTTTAGGCAATGGTTTAGAACTAAACCTGAGCCTAAACTCGGATAGGCTGTTGCAGGAACGGATGCAACACGAAAGGAGTTTAGAGCGTTTGATAAATGAGCGTACCATGCAAGAACAACGCATGAATCTGGACCATAGTTTGAGCATTGAGCGCTTAAACTTAGAGCGGAGCCTAACGCAAAACCTGAGCGAAAGAAACTTGAACCTAGCTCAAAACAGCGACAGCAGGAACCTGATGGAACGTGGCCTTATCGATAGAAACCTGAACGCGGAGCAGCGCACAATGTTGGATAGGAATTTGAACACGGAGCGCACTCTAATGGATAGAAATTTGAATTCGGATAGGAATTTGTTAGAtaggaatttaaataatttagatagGGGTTTCGGTACAACGGACCGATTGAGTGAAAGACTGAGCCGCATGGATTCAATTGGCGACATAAGACACAACAGTGATATAAATGACCTGAAATATCGCGAGTACAAGGCACATTTGGAAAACTTGCGAACGGAAAGTTCAAGGTCGTTGGAAGGGAGGGCGACGGCGGCGGCAGACGAGGATCGGGGAACCACCCCGTCTACGCCGCCCACACCGATTTCTGTCGGCGAGaattttcaagaagaaaagGTGTTTAATTCCAAAGCCGAGCTGCAGTTGCACACCCAGGCGCATATGCGTGAGGCCAAACCCTACAAATGTTCGCAATGTTGTAAAGCTTTCGCCAATAGTTCCTATCTATCGCAACACACAAGAATACACCTCGGCATCAAACCATATAGATGTGAAATTTGCCAAAGGAAGTTCACACAACTCAGCCATTTACAGCAGCATATTCGTACGCATACGGGGGATAAACCCTACAAATGCCGACATCCCGGTTGCCAAAAGGCGTTTTCGCAGCTGAGTAACTTGCAATCCCACTCAAGATGTCACCAGACTGACAAGCCGTACAAATGCAATTCGTGTTACAAGTGCTTTAGCGATGAACCGTCCCTGTTAGAACACATtccaaaacataaagaaaGCAAACACCTCAAAACCCACATTTGCCAATACTGCGGCAAAAGCTACACCCAGGAAACCTACTTGAGCAAACACATGCAGAAACATGCCGAGCGAACTGACAAACGACCGCCAATTGGACCTGGACTTGGTTTAAATCATCGTGGTATGGATCACCCATACTGGCCGAAAGTAAGTCCAGATAGTGCGGAGAATATGCATGATTACTCTACGGATATTCCTCGGCAAATTCTGGAGCCCAACGACGATCTCGTCATCATCCGACAGATGAATCAAAACCAATCAGCAGCTGCAGGTACTCCCACCGGTAACCTAGCGAATACCTATGACACATCTATATCGAAATCTAATACAAATTCGGCCTTCACCCCCATTAACTCCATGTCGGGGCATTTGAGTTTGAACCATCATCAACTGGCGCCTAACCGATCATACATTTACGATTCGATCAATTTCCAAAAACAAAATGGCTTGGAAATACCCAAATCGCAATCGTCGAATGGATTCCCGAACCAGTTGATATCGCTTCACCAAATTAGGAATTATGCACATCAGCCCAATTCGAGTTTAATGGAACATTCCATTTTAGGATTAAAAGATAAATAA
Protein Sequence: MEAKLTTVRPIPEAAMDSSDSSDSCATNNNDNTSISLYKPSFKYNDIVNKLDSYNNNQLLLPTQFYKTLLAKAVLSSNDDKSNVYKNMFFHKDRDFEQKAFGWDGAQSGGSPSGPQTGGVGGQGAQGLVHWMSVMAEHMDPAVSHYMSWNQEQCGQHGKDDYPNWTRNSMGINKQGYESKMNEHNQMQKVYAGMEDHHMAGTPGLYTSGRSTSSSSSPGVAGSSPALLVVPQPINASKMGGLQNGGPQPRKYQCKMCPQPAFFSRGYANCSYFLALTIIALALHLIQTAHMAHTDFSMWYSLSPYLNTTGQTKLEGRLEYRSGGLDFHQPPMLLENSQNYSHLQRSIDTLRSLGDRLGDRNVDLRLNLHHQDRLSDRNLNLNDRPNQGGSLGNGLELNLSLNSDRLLQERMQHERSLERLINERTMQEQRMNLDHSLSIERLNLERSLTQNLSERNLNLAQNSDSRNLMERGLIDRNLNAEQRTMLDRNLNTERTLMDRNLNSDRNLLDRNLNNLDRGFGTTDRLSERLSRMDSIGDIRHNSDINDLKYREYKAHLENLRTESSRSLEGRATAAADEDRGTTPSTPPTPISVGENFQEEKVFNSKAELQLHTQAHMREAKPYKCSQCCKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLSKHMQKHAERTDKRPPIGPGLGLNHRGMDHPYWPKVSPDSAENMHDYSTDIPRQILEPNDDLVIIRQMNQNQSAAAGTPTGNLANTYDTSISKSNTNSAFTPINSMSGHLSLNHHQLAPNRSYIYDSINFQKQNGLEIPKSQSSNGFPNQLISLHQIRNYAHQPNSSLMEHSILGLKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -