Pder015067.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- -
- Assembly
- GCA_963942485.1
- Location
- OZ012629.1:4531185-4534871[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.094 8.6 7.5 1.5 2 23 181 201 180 201 0.94 2 20 1.2 1.1e+02 4.0 3.7 1 22 211 232 211 235 0.87 3 20 0.2 18 6.5 1.0 2 13 239 250 238 261 0.74 4 20 0.7 64 4.7 3.8 1 23 279 300 279 300 0.95 5 20 5.7 5.2e+02 1.9 0.3 1 19 310 328 310 330 0.93 6 20 5.5 5e+02 1.9 6.1 3 23 339 359 338 359 0.88 7 20 9 8.2e+02 1.3 0.7 1 12 380 391 380 403 0.74 8 20 1.1 1e+02 4.1 0.4 5 23 411 429 408 429 0.93 9 20 1.5 1.4e+02 3.7 0.3 1 23 434 458 434 458 0.88 10 20 4.5e-05 0.0042 17.9 2.2 2 23 463 484 462 484 0.97 11 20 6.4e-05 0.0058 17.5 1.5 1 23 490 512 490 512 0.99 12 20 0.0024 0.22 12.5 0.4 2 23 518 540 517 540 0.93 13 20 0.011 0.96 10.5 0.3 3 23 581 602 580 602 0.96 14 20 8.1e-05 0.0074 17.1 1.6 1 23 605 627 605 627 0.97 15 20 0.48 44 5.2 2.4 3 23 641 662 639 662 0.93 16 20 4 3.7e+02 2.3 4.4 1 23 665 688 665 688 0.95 17 20 0.0029 0.26 12.2 2.0 1 23 694 716 694 716 0.97 18 20 1.9e-06 0.00017 22.3 2.6 2 23 723 744 722 744 0.97 19 20 0.0021 0.19 12.7 2.0 1 23 750 772 750 772 0.97 20 20 0.00014 0.012 16.4 3.0 1 23 778 800 778 800 0.99
Sequence Information
- Coding Sequence
- ATGGAATTAAGTGAAGAATTTCTTACCAGCGGTAAACTGTGCAGAACATGCCTATCAATGAAAACCCTTTCCGATATATTTGAGGCTAATTGTGACGGTATATCTGTTTTACAAATGCTAAGGGAATGTTTAAATCATGAGGTGGAAGTAACTGATGGTTTGCCGAAAAGAATATGCTTGTCTTGCACAGAGATTTTATATCAAACGCATAATTTTATGAACTTATGTAAAAGGTCAATTAAGACAGTAGATGATTTCCTGCTATTACAACAGAATAAAGGGGAACATTCTTATGCAAAGGAAAACCATCCGCCACAGGGTATTTTGGAAGTAACTGCAGAAAAATTATGGGACACGAAAATTGGTTTAATTCAATGTAACGAAGAGAATAACGATGCTCGAATAGAGGACATGGATGGTTTAGTTGAAACCATCAAAATAGAGGTAGAAGATATATCAGATATCAAAACCGAAATTGTAAACTTACCGAATATTGAAGAAAAGAAGGCAGTTGTGACTGAACGACAAGGAAATATGACTAGTTGCCAAGTTTGTGGAAAAAGTATTGAGTCCTGTTCCTTACAAGAACATTTAAGAAACCATGTGATTACAATATCTGGTCAAAATGGGTTCACATGTATTAAATGTAAGCTAGATTTTACGAGTGATGATGAACTAAGACGACACTGTAGAACTAAAAGTCATTTAATCAAGACTTGTTTAATATGCAATAAAACTTTCAAGGATTTGCTGCGACACTACAATCACATGCAAGCGATGCACaatgatataaaaattgaaagtacAGCAATCGACAAACCGAAAAAAGAAGGGCACAGTTGCGTTGTTTGTGACACAACCATTATGCACAAGTCTTTAACTCGCCACTTAAAAACTCATTTAATATCAAAATCTCATCAAAATGGGTACACGTGTATCAAATGTAAAGTGAGTTTTATAAGTATTCCTGCACTAAGAGAACATTGTGAATCTGAGATTCATTTAAACAAGGCATGTTTAATTTGCGATAAAACCTTCCATAATTTGCATTTGCATTTCAAACACACACTACAGCACCGACTAATGAACTGTACTAATACGCCTATAAATATTTCACGTAAAAAGCCACAAACCAAATACACTTGCAGATTCTGTAACATGAACTTTGAAGCGTTCGTCGATATTTATTCGCATTACGAAGACAATCACTATTCCTCCAAGGACTGTATTATATGCAATAAGACATACAATTTGGCAAAACGTGTTCGTTATCACATAAACTCGCATAGTGATAAGAAGTTTTCGTGTTATCCATGTAAAGTGGCCTATGTTACTCGTGAGGAACTGGACCAGCACCACCTAACACCTGAacatataaatagaaaaaaatgttctgtttGCTTTAGAACATTTAAGAATAAGAATAACATGGAGGTACACATGCTGAGTCATACCAAAGAGAAGAAATACCAATGCGACGAATGTggtcaaaaatttatatacagtACCAGCATTGAGAGGCACAAAAAACGTCATGCTGGAGCGTCTTGTATATGTGATATTTGTGGCAAAGAAATTGCAACAAAGTATAACCTGGATATCCATAAACAAAACGTGCATGGTCACAATTCCTCAGTAACACCGTTTTCGCGTGTATGTGAACTTTGTGGCCATGTAGCCAAGTCCCCAAAGCTCAGCATTCTTCATGAGGCACGTCACAAATACAACCACACAAGAATATGTAAAAAGTGCAACGCAACATTTTTGGATCGTGCCGAATTAAATCAACATATAGAGTCATCCCACCAGATCTATCATTGTAAGGAGTGCCCCAAAAAGTTTGACTACCCGGAAGTATTAAAACGTCACACGTTAATCCATCAGTGGGACAAGCTAGATAACGTAGACGCTTTAAACTGTTGCCGGTTGTGTACGGCTCGATTTGACCACCAGGAACCACTGACCATACACTATGCGAAAGAACACCAAATTCATCCTTGTTTCGAGTGTAACGCTTGCTTCTTATACAAGTATTTGTTGGACGACCACAGTAAAACGAAGCATTTGGGGATATACAAGTATAACTGTTCGTtttgtgataaaaattttGCTACTAAATTTCGAATGAACGAACACGAACTTACTCATACTGGAAAGAAACCACAAGTTTGTAAGATATGTTCTGCGAAATTTAGACAAAAGGTTCATTTGATAAGACATATGCGGACTCATACGGGAGAGAAGCCATATGTTTGTAGGTTTTGTGGTAAAACTTTTGCACAACTGACCAACTGTGCTACTCATGAGAGGATCCACACAGGGGAAAAACCATATACGTGTGACGTGTGTGATAAAGGGTTTTATCATGGGTCTACTATGAAGAAACATAGACTTACACATGACAAATAA
- Protein Sequence
- MELSEEFLTSGKLCRTCLSMKTLSDIFEANCDGISVLQMLRECLNHEVEVTDGLPKRICLSCTEILYQTHNFMNLCKRSIKTVDDFLLLQQNKGEHSYAKENHPPQGILEVTAEKLWDTKIGLIQCNEENNDARIEDMDGLVETIKIEVEDISDIKTEIVNLPNIEEKKAVVTERQGNMTSCQVCGKSIESCSLQEHLRNHVITISGQNGFTCIKCKLDFTSDDELRRHCRTKSHLIKTCLICNKTFKDLLRHYNHMQAMHNDIKIESTAIDKPKKEGHSCVVCDTTIMHKSLTRHLKTHLISKSHQNGYTCIKCKVSFISIPALREHCESEIHLNKACLICDKTFHNLHLHFKHTLQHRLMNCTNTPINISRKKPQTKYTCRFCNMNFEAFVDIYSHYEDNHYSSKDCIICNKTYNLAKRVRYHINSHSDKKFSCYPCKVAYVTREELDQHHLTPEHINRKKCSVCFRTFKNKNNMEVHMLSHTKEKKYQCDECGQKFIYSTSIERHKKRHAGASCICDICGKEIATKYNLDIHKQNVHGHNSSVTPFSRVCELCGHVAKSPKLSILHEARHKYNHTRICKKCNATFLDRAELNQHIESSHQIYHCKECPKKFDYPEVLKRHTLIHQWDKLDNVDALNCCRLCTARFDHQEPLTIHYAKEHQIHPCFECNACFLYKYLLDDHSKTKHLGIYKYNCSFCDKNFATKFRMNEHELTHTGKKPQVCKICSAKFRQKVHLIRHMRTHTGEKPYVCRFCGKTFAQLTNCATHERIHTGEKPYTCDVCDKGFYHGSTMKKHRLTHDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01163490;
- 90% Identity
- -
- 80% Identity
- -